GBrowse Details

Vigan.04G327100.01

Basic Information:
Name: Vigan.04G327100.01
Multiple alignment
Variant Information
Position: Chr04:44990151..44996988 (+ strand)
Length: 6838
Functional Information:
Description: Similar to Uncharacterized protein. [I1NA77, Glycine max]
GO: Biological Process: intracellular protein transport (GO:0006886)
Cellular Component: membrane (GO:0016020)
Molecular Function: SNAP receptor activity (GO:0005484)
Molecular Function: protein binding (GO:0005515)
InterPro: Target SNARE coiled-coil domain (IPR000727)
Syntaxin/epimorphin, conserved site (IPR006012)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.17,1.33,7.49,3.84,11.92,6.47,10.38,12.18
Automatic updates:
Name: BT097365 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-16I3 unknown mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:44990151..44990352 (+ strand)
Length: 202
Type: five_prime_UTR
Position: Chr04:44990353..44990508 (+ strand)
Length: 156
Type: CDS
Position: Chr04:44990626..44990751 (+ strand)
Length: 126
Type: CDS
Position: Chr04:44991510..44991669 (+ strand)
Length: 160
Type: CDS
Position: Chr04:44991780..44991865 (+ strand)
Length: 86
Type: CDS
Position: Chr04:44991968..44992036 (+ strand)
Length: 69
Type: CDS
Position: Chr04:44992137..44992181 (+ strand)
Length: 45
Type: CDS
Position: Chr04:44992299..44992361 (+ strand)
Length: 63
Type: CDS
Position: Chr04:44992448..44992524 (+ strand)
Length: 77
Type: CDS
Position: Chr04:44996682..44996697 (+ strand)
Length: 16
Type: CDS
Position: Chr04:44996698..44996988 (+ strand)
Length: 291
Type: three_prime_UTR


>Vigan.04G327100.01
CTTTGATCTT GACAATGGCC ACTGTGTGAA ACATGAAAAA AGTTGAGAAG TTAGTGTTTA TGGATGTTAC AGGCTGGAGG
GCGTTGAGTT CAACAAAGGG ATGAAGGTGT AACAGTGGAG TCTACAACAC TCACTCATCA ATATTCGGAA GAAAGAGGGA
AGAAATTTTT TTTTTCCCAA GGAACAACAC CAGAGTCAAG CCATGAGTGT CATCGACATT CTCACCAGAG TTGATTCCAT
CTGTAAAAAG TATGATAAAT ACGACGTCGA GAAACAAAAG GATTCCAATA TCTCCGCTGA CGATGCATTC GCAAAACTCT
ACGCCTCCGT TGATGCCGAA ATCGAGACCT TACTTCAGAA AGCAGAAACC GCTTCCAAGG AGAAAAGTAA GGCGTCTACT
GTAGCGATCA ATGCCGAGAT TCGTCGTACT AAGGCTAAGT TGTTGGAGGA GGTTCCCAAG TTGCAGAGAT TGGCTATGAA
AAAGGTAAAG GGGCTTTCAT CGCAAGAATT TGCTGCCCGT AATGATTTGG TTCTTGCATT GCCAGATAGG ATTCAAGCTA
TCCCAGATGG GACCCCTGCA GTACCCAAAC AAACGGGAAG TTGGGCAGCT TCTGCCTCAC GTCCTGGAAT TAAATTTGAT
TCAGATGGAC AATTTGATGA TGAATACTTC CATCAAACCG AAGAATCAAG TCGATTTAGG CAGGAGTATG AAATGCGTAA
ACTGAAACAG GATCAAGGTT TGGATATGAT AGCAGAAGGA TTGGATACTT TGAAAAACAT GGCACATGAT ATGAATGAGG
AACTGGATAG ACAAGTACCA CTGATGGATG AGATTGATGC TAAGGTGGAC AAGGCATCTT CCGACCTTAA AAATACCAAT
GTTAGACTTC GAGACACAGT GAACCAGCTT CGGTCCAGTC GAAACTTCTG CATTGATATT GTTTTATTGA TTATAATTTT
GGGAATTGCT GCCTATTTGT ACAATGTGCT AAAGAAATGA TACGGCATAG AGGACAGATC ATTGGATCAA TTTGTATGGC
ATATCTGTAT CTCTTGTATT TTCTTGGTTG TATCGTGGTG TGACTCATGT CTAATTTTTT TTAAAAACAA TATTTTGCAC
TTGTTCCTGT TACTTACGAG ATGCACTTGT CCTTTATACA GACTCAAGAT GCCACTAAAT TATGTCACAC TGCGAATTTG
TATTCGTATT GACACTTGTG TATATCAAAT TAAGATGGAT TATCTATAAC AAAAATAAAA TAAAATTTAA TGCCAGTTTT
TATTTTACAA A

>Vigan.04G327100.01
ATGAGTGTCA TCGACATTCT CACCAGAGTT GATTCCATCT GTAAAAAGTA TGATAAATAC GACGTCGAGA AACAAAAGGA
TTCCAATATC TCCGCTGACG ATGCATTCGC AAAACTCTAC GCCTCCGTTG ATGCCGAAAT CGAGACCTTA CTTCAGAAAG
CAGAAACCGC TTCCAAGGAG AAAAGTAAGG CGTCTACTGT AGCGATCAAT GCCGAGATTC GTCGTACTAA GGCTAAGTTG
TTGGAGGAGG TTCCCAAGTT GCAGAGATTG GCTATGAAAA AGGTAAAGGG GCTTTCATCG CAAGAATTTG CTGCCCGTAA
TGATTTGGTT CTTGCATTGC CAGATAGGAT TCAAGCTATC CCAGATGGGA CCCCTGCAGT ACCCAAACAA ACGGGAAGTT
GGGCAGCTTC TGCCTCACGT CCTGGAATTA AATTTGATTC AGATGGACAA TTTGATGATG AATACTTCCA TCAAACCGAA
GAATCAAGTC GATTTAGGCA GGAGTATGAA ATGCGTAAAC TGAAACAGGA TCAAGGTTTG GATATGATAG CAGAAGGATT
GGATACTTTG AAAAACATGG CACATGATAT GAATGAGGAA CTGGATAGAC AAGTACCACT GATGGATGAG ATTGATGCTA
AGGTGGACAA GGCATCTTCC GACCTTAAAA ATACCAATGT TAGACTTCGA GACACAGTGA ACCAGCTTCG GTCCAGTCGA
AACTTCTGCA TTGATATTGT TTTATTGATT ATAATTTTGG GAATTGCTGC CTATTTGTAC AATGTGCTAA AGAAATGA

>Vigan.04G327100.01
MSVIDILTRV DSICKKYDKY DVEKQKDSNI SADDAFAKLY ASVDAEIETL LQKAETASKE KSKASTVAIN AEIRRTKAKL
LEEVPKLQRL AMKKVKGLSS QEFAARNDLV LALPDRIQAI PDGTPAVPKQ TGSWAASASR PGIKFDSDGQ FDDEYFHQTE
ESSRFRQEYE MRKLKQDQGL DMIAEGLDTL KNMAHDMNEE LDRQVPLMDE IDAKVDKASS DLKNTNVRLR DTVNQLRSSR
NFCIDIVLLI IILGIAAYLY NVLKK*