GBrowse Details

Vigan.04G328800.01

Basic Information:
Name: Vigan.04G328800.01
Multiple alignment
Variant Information
Position: Chr04:45111463..45114498 (- strand)
Length: 3036
Functional Information:
Description: Similar to aquaporin PIP2-7-like. [XP_003521392.1, Glycine max]
GO: Biological Process: transport (GO:0006810)
Cellular Component: membrane (GO:0016020)
Molecular Function: transporter activity (GO:0005215)
InterPro: Major intrinsic protein (IPR000425)
Major intrinsic protein, conserved site (IPR022357)
Aquaporin-like (IPR023271)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.11,0.09,33.27,148.09,0.06,47.36,0.42,10.06
Automatic updates:
Name: KR185762 NCBI(nuccore)
Organism: Vigna unguiculata
Description: Vigna unguiculata plasma membrane intrinsic protein (PIP2;1) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:45111463..45112328 (- strand)
Length: 866
Type: three_prime_UTR
Position: Chr04:45112329..45112448 (- strand)
Length: 120
Type: CDS
Position: Chr04:45113391..45113531 (- strand)
Length: 141
Type: CDS
Position: Chr04:45113639..45114232 (- strand)
Length: 594
Type: CDS
Position: Chr04:45114233..45114498 (- strand)
Length: 266
Type: five_prime_UTR


>Vigan.04G328800.01
CAGAAGACAC TGAAAGGGGT TAATCAGAAG CATAGAAGTA CAAAGGTGGG TTCAGTGGGG GCAGGGTAAG AGTGAAAATT
GTAATCAGCC ATTGGAAAAG GAAGTCTTAG TGAAAATTTT ACTTCAGCCA TCAAACTCAA GCAACGGTAC CACACGCCAT
ATCAACAGCA TGTTCCCTTG TATATATAGA TACACTTGCT TCCATAATTT CCTGTGAACC TTATCACATA GCACAACACC
GCTGAATCTT GCTAACTCCC ACAACCATGG CCAAGGACAT AGAAACCGAG GTACCAATTG AATTGACCCA CAAGGACTAT
TACGACCCAC CCCCAGCCCC ATTCTACGAC GCCGCCGAGC TCCGCAAGTG GTCCTTCTAC AGGGCCCTCA TCGCCGAGTT
CGTCGCCACC CTCCTCTTCC TCTACGTCAC CATCCTCACC GTCATCGGCT ACAACCACCA GATCCACCTC GGCGACTCCT
GCGATGGCGT CGGCATTCTC GGCATCGCCT GGGCCTTCGG CGGCATGATC TTCGTCCTCG TCTACTGCAC CGCGGGCATT
TCCGGGGGTC ACATAAACCC CGCCGTCACG TTCGGGTTGT TTCTTGCCAG GAAGGTGTCG CTGGTGAGAG CGATCGCGTA
CATGGTGGCT CAGTGCTTGG GAGCTATATC TGGCGTGGGG CTGGTAAAGG CATTTCAGAA GAGCTACTAC AACAGGTACA
ATGGTGGCGT GAACTTGCTC TCTGATGGGT ACAGTAAAGG CACTGGCTTG GGCGCTGAGA TTATTGGCAC CTTTGTTCTT
GTCTACACTG TCTTCTCCGC CACCGATCCC AAGAGAAAAG CCAGAGATTC TCATGTTCCC GTTTTGGCAC CACTTCCAAT
TGGGTTCGCG GTGTTCGTGG TTCACTTGGC CACCATCCCT GTCACCGGCA CTGGCATCAA CCCCGCCAGA AGCTTCGGCC
CTGCTGTCAT ACTCAACAAC GAGAAAGCAT GGGATGACCA GTGGATCTTC TGGGTCGGAC CTTTCATCGG TGCAGCCATT
GCTGCAGTCT ACCACCAGTA CGTATTGAGG GCACAAGCGG CAAAGGCTCT CGGGTCATTC AGGAGCTCCT CGCACCTGTA
ACTCCAACAA AACCACATGG AGACAGCCTT AATTAATCGT ATTCGATGGA TCTTGGATTT GGGATTTGTA TATCCTCGTC
ACTGTGTGTA TTTATTTATG TTTACTATTT GCGGTAACGT CCATTCAACG GACATGCATG TCCATGTTAA TTTGTGTATG
CATATCTTTA ATCCTCTATC CTACATGTGC GCTAATTACC TGTGGCTGTG GTTCTCGGGC GATGATAGGA TCACATGTAG
TAGTGAAGAG GTGTTTCTGA GAGCGAGATC GTTGTACCGT GTCTATTTAA CTGTGTCGCG ATTAATGGAT TTATCTATGG
GTGTGGTCCA TGATTGTTTA ATTTTTCTGT TCTGAAATGA AAGGTGGTGT GGTCCAGTAC GGATTTTTAT TGGACTGAGA
ATCTTTTCCC CCGGGGTGAT CAATGACGTC CCTGTCTTTA CTCGTTACAT GCTTTATGCA TGGATGGATG AGGGGGACCA
AACTCCTTTC CAAACTGTCT ATTTTATTTC AACGTTAGGA GGTGAACAAA TTTGAAAACC AAAACTCATA AACTACATGT
TAGTGTGAAA CTTTCTGAAT GTTTGTCATT TTACCCACCA AACATATCTG TCATTATCCA AGATGGGTAA GTGTATGCAA
GGTGCAAATT TAGCCAACTT GTGATGCGAG CGATGCGATT GCGACTTTTT GTTGGAAGTT ATCCAGGGAA GGATTTGGTT
TTTCGATCGA GTTCCACGAT TCACATGCTC CCATGGGTTA TGGAATTCAT ATATACAAGT TCAGTACTTA ATGAAAATAG
CAAATTTGTA CTTCGGCAGT AGATTTTGTT TAAGTTTGTA ACTTCAATAG TTTAAGATAA AGAGGAA

>Vigan.04G328800.01
ATGGCCAAGG ACATAGAAAC CGAGGTACCA ATTGAATTGA CCCACAAGGA CTATTACGAC CCACCCCCAG CCCCATTCTA
CGACGCCGCC GAGCTCCGCA AGTGGTCCTT CTACAGGGCC CTCATCGCCG AGTTCGTCGC CACCCTCCTC TTCCTCTACG
TCACCATCCT CACCGTCATC GGCTACAACC ACCAGATCCA CCTCGGCGAC TCCTGCGATG GCGTCGGCAT TCTCGGCATC
GCCTGGGCCT TCGGCGGCAT GATCTTCGTC CTCGTCTACT GCACCGCGGG CATTTCCGGG GGTCACATAA ACCCCGCCGT
CACGTTCGGG TTGTTTCTTG CCAGGAAGGT GTCGCTGGTG AGAGCGATCG CGTACATGGT GGCTCAGTGC TTGGGAGCTA
TATCTGGCGT GGGGCTGGTA AAGGCATTTC AGAAGAGCTA CTACAACAGG TACAATGGTG GCGTGAACTT GCTCTCTGAT
GGGTACAGTA AAGGCACTGG CTTGGGCGCT GAGATTATTG GCACCTTTGT TCTTGTCTAC ACTGTCTTCT CCGCCACCGA
TCCCAAGAGA AAAGCCAGAG ATTCTCATGT TCCCGTTTTG GCACCACTTC CAATTGGGTT CGCGGTGTTC GTGGTTCACT
TGGCCACCAT CCCTGTCACC GGCACTGGCA TCAACCCCGC CAGAAGCTTC GGCCCTGCTG TCATACTCAA CAACGAGAAA
GCATGGGATG ACCAGTGGAT CTTCTGGGTC GGACCTTTCA TCGGTGCAGC CATTGCTGCA GTCTACCACC AGTACGTATT
GAGGGCACAA GCGGCAAAGG CTCTCGGGTC ATTCAGGAGC TCCTCGCACC TGTAA

>Vigan.04G328800.01
MAKDIETEVP IELTHKDYYD PPPAPFYDAA ELRKWSFYRA LIAEFVATLL FLYVTILTVI GYNHQIHLGD SCDGVGILGI
AWAFGGMIFV LVYCTAGISG GHINPAVTFG LFLARKVSLV RAIAYMVAQC LGAISGVGLV KAFQKSYYNR YNGGVNLLSD
GYSKGTGLGA EIIGTFVLVY TVFSATDPKR KARDSHVPVL APLPIGFAVF VVHLATIPVT GTGINPARSF GPAVILNNEK
AWDDQWIFWV GPFIGAAIAA VYHQYVLRAQ AAKALGSFRS SSHL*