GBrowse Details

Vigan.04G329100.01

Basic Information:
Name: Vigan.04G329100.01
Multiple alignment
Variant Information
Position: Chr04:45132696..45137423 (- strand)
Length: 4728
Functional Information:
Description: Similar to Diaminopimelate decarboxylase. [D2DKE7, Glycine max]
GO: Biological Process: lysine biosynthetic process via diaminopimelate (GO:0009089)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: diaminopimelate decarboxylase activity (GO:0008836)
InterPro: Ornithine/DAP/Arg decarboxylase (IPR000183)
Diaminopimelate decarboxylase, LysA (IPR002986)
Alanine racemase/group IV decarboxylase, C-terminal (IPR009006)
Orn/DAP/Arg decarboxylase 2, C-terminal (IPR022643)
Orn/DAP/Arg decarboxylase 2, N-terminal (IPR022644)
Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site (IPR022653)
Orn/DAP/Arg decarboxylase 2, conserved site (IPR022657)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:42.33,54.57,58.94,52.29,80.98,112.57,43.32,50.05
Arabidopsis thaliana homolog: AT3G14390.1, AT5G11880.1
Automatic updates:
Name: NM_001254086 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max diaminopimelate decarboxylase 2, chloroplastic-like (LOC100786832), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001255053 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max diaminopimelate decarboxylase 2, chloroplastic-like (LOC100809499), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:45132696..45133041 (- strand)
Length: 346
Type: three_prime_UTR
Position: Chr04:45133042..45133122 (- strand)
Length: 81
Type: CDS
Position: Chr04:45133508..45133597 (- strand)
Length: 90
Type: CDS
Position: Chr04:45133730..45133852 (- strand)
Length: 123
Type: CDS
Position: Chr04:45134404..45134589 (- strand)
Length: 186
Type: CDS
Position: Chr04:45135447..45135608 (- strand)
Length: 162
Type: CDS
Position: Chr04:45135795..45135944 (- strand)
Length: 150
Type: CDS
Position: Chr04:45136532..45136706 (- strand)
Length: 175
Type: CDS
Position: Chr04:45136841..45137337 (- strand)
Length: 497
Type: CDS
Position: Chr04:45137338..45137423 (- strand)
Length: 86
Type: five_prime_UTR


>Vigan.04G329100.01
AAAAAAGCAA CATGGACGAG GGTTTTGACA TGTGATTTTC CTTGCAACTC AGTCTTGTCG GCAAAATCAT TCATCAAGAC
ACTGCAATGG CAGGCTCACA CCTTCTTTCT CATTCTCATT CCCTTCCCAA AACCTATAAC CACTCCTTCA ACCAAAACCC
TTTATCTCAA AATCTACTTC TACCCTTCAA ATTCAAGGCC ACCCTCAGAC CGCGTGCTCT TAGAGCTGTT CTCTCCCAGA
AAGCTGCTCA AACCGCGGTA GAGGACTCAA AGAAGGCTCC TTTTCAGCAC TGTTTCACCA AATCCGAAGA TGGGTATCTG
TACTGTGAGG GCCTCAAGGT ACATGACATC ATGGAATCTG TTGAGAGAAG GCCTTTCTAT CTTTACAGCA AGCCCCAGAT
AACTAGGAAT GTTGAAGCCT ATAGGAATGC ATTGGAAGGG TTGAACTCTA TAATTGGGTA TGCCATTAAG GCCAACAATA
ACTTGAAGAT TCTGGAACAT TTGAGGCACT TGGGCTGTGG AGCTGTGCTT GTTAGTGGGA ATGAGCTTAG ATTGGCTCTT
CGTGCTGGCT TTGATCCCAC AAGGTGTATC TTTAATGGGA ATGGTAAAAT CTTGGAGGAC TTGGTCTTGG CTGCCCAGGC
AGGTGTCTTT GTCAACATTG ATAGTGAGTT TGACTTGGAG AACATTGTAG AGGCTGCAAA AAGGGCCGGA AAGAAGGTCA
ATGTTTTACT TCGGATTAAT CCGGATGTAG ATCCACAGGT CCATCCTTAT GTTGCTACTG GGAATAAGAA CTCTAAATTT
GGCATTAGAA ATGAGAAGCT GCAATGGTTC TTAGATGTAG TGAAGGAGCA TTCTAATGAG CTCAAACTAG TAGGGGCCCA
CTGCCATCTC GGTTCAACAA TCACCAAGGT AGACATTTTC AGGGATGCTG CCACCATTAT GATCAACTAC ATTGATCAAA
TCCGAGCTCA GGGTTTTGAA GTTGATTATT TAAATATTGG AGGAGGACTT GGGATAGATT ATTATCATTC TGGTGCCATC
CTTCCTTCAC CTAGAGATCT CATTGACACT GTACGAGATC TTGTTATTTC CCGAGGTCTT AATCTCATCA TTGAACCAGG
GAGATCACTC ATTGCTAACA CATGTTGCTT AGTTAACCGG GTGACAGGGG TTAAAACTAA TGGATCTAAA AACTTCATTG
TAATTGATGG AAGTATGGCA GAACTTATCC GCCCTAGTCT CTATGATGCT TACCAGCATA TAGAGTTGGT TTCCCCTGCC
CCATCAAATG CTGAGAAAGC AACCTTTGAC GTGGTTGGCC CAGTCTGCGA GTCTGCAGAT TTCTTAGGAA AAGAAAGAGA
ACTTCCTACT CCAGCCAAGG GTACTGGTTT GGTCGTTCAT GATGCTGGCG CTTATTGCAT GAGCATGGCA TCAACATACA
ATCTAAAGAT GCGGCCTCCT GAGTATTGGG TTGAAGATGA TGGATCAGTG AGCAAAATAA GACATGGTGA GACTTTTGAA
GACCACATTC GGTTTTTTGA GGGCCTTTGA GCTGGTAATT CATCCTGTAG GAAAGGAAGC TGGAAAATTG TTGTGTATTT
TGGATTTTGG ATCTTTCCAA GTCTCTGAAT GCATCACTCT TTTTTTGTTT TTCTTCTATG CTACTTGAAT AAAGTGTGAT
TTCGGTTAGA TTTTACACTG CAGTTAATCT TTTAGTCTTT GGTGTTAGTG GTAGACCACC TATGAAGAAA AAAAAATTCT
GAGTGTGAAT GAACCTGCAT GAATGTTCAA TTGACATATA AATGAACCTA CTGGACACTT TCTTAGAATG TTCTTTTTCT
AGTGGTGTGT TTGGTTTAAT TGACACAAAT AAATTTTAAC TAATTTAGTC CTACTG

>Vigan.04G329100.01
ATGGCAGGCT CACACCTTCT TTCTCATTCT CATTCCCTTC CCAAAACCTA TAACCACTCC TTCAACCAAA ACCCTTTATC
TCAAAATCTA CTTCTACCCT TCAAATTCAA GGCCACCCTC AGACCGCGTG CTCTTAGAGC TGTTCTCTCC CAGAAAGCTG
CTCAAACCGC GGTAGAGGAC TCAAAGAAGG CTCCTTTTCA GCACTGTTTC ACCAAATCCG AAGATGGGTA TCTGTACTGT
GAGGGCCTCA AGGTACATGA CATCATGGAA TCTGTTGAGA GAAGGCCTTT CTATCTTTAC AGCAAGCCCC AGATAACTAG
GAATGTTGAA GCCTATAGGA ATGCATTGGA AGGGTTGAAC TCTATAATTG GGTATGCCAT TAAGGCCAAC AATAACTTGA
AGATTCTGGA ACATTTGAGG CACTTGGGCT GTGGAGCTGT GCTTGTTAGT GGGAATGAGC TTAGATTGGC TCTTCGTGCT
GGCTTTGATC CCACAAGGTG TATCTTTAAT GGGAATGGTA AAATCTTGGA GGACTTGGTC TTGGCTGCCC AGGCAGGTGT
CTTTGTCAAC ATTGATAGTG AGTTTGACTT GGAGAACATT GTAGAGGCTG CAAAAAGGGC CGGAAAGAAG GTCAATGTTT
TACTTCGGAT TAATCCGGAT GTAGATCCAC AGGTCCATCC TTATGTTGCT ACTGGGAATA AGAACTCTAA ATTTGGCATT
AGAAATGAGA AGCTGCAATG GTTCTTAGAT GTAGTGAAGG AGCATTCTAA TGAGCTCAAA CTAGTAGGGG CCCACTGCCA
TCTCGGTTCA ACAATCACCA AGGTAGACAT TTTCAGGGAT GCTGCCACCA TTATGATCAA CTACATTGAT CAAATCCGAG
CTCAGGGTTT TGAAGTTGAT TATTTAAATA TTGGAGGAGG ACTTGGGATA GATTATTATC ATTCTGGTGC CATCCTTCCT
TCACCTAGAG ATCTCATTGA CACTGTACGA GATCTTGTTA TTTCCCGAGG TCTTAATCTC ATCATTGAAC CAGGGAGATC
ACTCATTGCT AACACATGTT GCTTAGTTAA CCGGGTGACA GGGGTTAAAA CTAATGGATC TAAAAACTTC ATTGTAATTG
ATGGAAGTAT GGCAGAACTT ATCCGCCCTA GTCTCTATGA TGCTTACCAG CATATAGAGT TGGTTTCCCC TGCCCCATCA
AATGCTGAGA AAGCAACCTT TGACGTGGTT GGCCCAGTCT GCGAGTCTGC AGATTTCTTA GGAAAAGAAA GAGAACTTCC
TACTCCAGCC AAGGGTACTG GTTTGGTCGT TCATGATGCT GGCGCTTATT GCATGAGCAT GGCATCAACA TACAATCTAA
AGATGCGGCC TCCTGAGTAT TGGGTTGAAG ATGATGGATC AGTGAGCAAA ATAAGACATG GTGAGACTTT TGAAGACCAC
ATTCGGTTTT TTGAGGGCCT TTGA

>Vigan.04G329100.01
MAGSHLLSHS HSLPKTYNHS FNQNPLSQNL LLPFKFKATL RPRALRAVLS QKAAQTAVED SKKAPFQHCF TKSEDGYLYC
EGLKVHDIME SVERRPFYLY SKPQITRNVE AYRNALEGLN SIIGYAIKAN NNLKILEHLR HLGCGAVLVS GNELRLALRA
GFDPTRCIFN GNGKILEDLV LAAQAGVFVN IDSEFDLENI VEAAKRAGKK VNVLLRINPD VDPQVHPYVA TGNKNSKFGI
RNEKLQWFLD VVKEHSNELK LVGAHCHLGS TITKVDIFRD AATIMINYID QIRAQGFEVD YLNIGGGLGI DYYHSGAILP
SPRDLIDTVR DLVISRGLNL IIEPGRSLIA NTCCLVNRVT GVKTNGSKNF IVIDGSMAEL IRPSLYDAYQ HIELVSPAPS
NAEKATFDVV GPVCESADFL GKERELPTPA KGTGLVVHDA GAYCMSMAST YNLKMRPPEY WVEDDGSVSK IRHGETFEDH
IRFFEGL*