GBrowse Details

Vigan.04G329400.01

Basic Information:
Name: Vigan.04G329400.01
Multiple alignment
Variant Information
Position: Chr04:45140397..45145949 (- strand)
Length: 5553
Functional Information:
Description: Similar to Uncharacterized protein. [K7MZ16, Glycine max]
InterPro: Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG (IPR005269)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.91,6.19,4.63,9.92,0.13,2.23,3.96,8.26
Arabidopsis thaliana homolog: AT3G53450.1
Automatic updates:
Name: NM_001254266 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3-like (LOC100787375), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:45140397..45140668 (- strand)
Length: 272
Type: three_prime_UTR
Position: Chr04:45140669..45140764 (- strand)
Length: 96
Type: CDS
Position: Chr04:45141183..45141326 (- strand)
Length: 144
Type: CDS
Position: Chr04:45141432..45141502 (- strand)
Length: 71
Type: CDS
Position: Chr04:45144155..45144254 (- strand)
Length: 100
Type: CDS
Position: Chr04:45144633..45144663 (- strand)
Length: 31
Type: CDS
Position: Chr04:45144852..45144949 (- strand)
Length: 98
Type: CDS
Position: Chr04:45145530..45145649 (- strand)
Length: 120
Type: CDS
Position: Chr04:45145650..45145949 (- strand)
Length: 300
Type: five_prime_UTR


>Vigan.04G329400.01
GGAGGGTAGA AGTGCGCGCG TGCCAAGTGC TATGGCTGGT CACGTGCGAA GACCAACATG GTTTTATTAT ATAAAGGCAT
GAGAGTTCTA AGAGTAGTAG CGAAGCAATC ACAGAGTCTT CTCCTAAATT CTCTTTTCTT CTCAAGGAGT GTAATTTTGT
TATTGTTGAA ACAGGGGAAG ATAGTGTTTG GAACAGAATT TGGATTTTGT GACACTCTTT TTGTTTCACA AACATTACAA
AATTTTTGTG TGACTGTGAA ATATAAACAT ATAGCTAACT ATCTTCCTTA CAACTAACAA ATGGAGACAC GTTGTGAGAT
AACGCATTCA AAGTTCAACA GGATTTGTGT GTTCTGTGGA AGTAGCCCCG GCAAGAAGAG TAGCTATCAA GATGCTGCCA
TTGAGCTCGG CAATGAACTG GTCTCAAGGA ACATCGATCT GGTGTATGGA GGGGGAAGCA TTGGTCTAAT GGGTTTAGTT
TCTCAAGCTG TTCATGATGG CGGTCGCCAT GTCATTGGAG TTATTCCCAA GACGCTCATG CCTCGAGAGC TAACTGGTGA
AACGGTGGGA GAAGTAAAAG CTGTTGCTGA TATGCACCAA AGAAAGGCAG AGATGGCCAA ACATTCAGAT GCCTTTATTG
CCTTACCAGG TGGATATGGG ACTCTAGAGG AGCTTCTTGA AGTCATAACC TGGGCACAAC TTGGGATTCA TGACAAGCCG
GTGGGATTAG TAAATGTTGA TGGATACTTC AATTCCTTGC TGTCATTTAT TGACAAAGCC GTGGAAGAGG GATTTATCAG
TCCAAATGCT CGTCACATAA TTGTATCAGC ACCAACAGCA AAGGAGTTGG TGAAGAAATT GGAGGATTAC GTTCCCTGCC
ATGAGGGTGT TGCTTCCAAG TTGAGCTGGC AGATAGAACA GCAGCTTGCA TACCCTCAAG ATTATGACAT GTCAAGGTAG
TTAGGTTACT TCACGTGCAC GGAAGATGAG ACCATATAGA ATTTTGAAGC TGGAAGAAGT TATATTTTCT ATCGTTGTTC
TGTTTTTATC CTTTTAATTT CTTGTGTAAA TTACCAGGAT TGACCTTGAT ATGTGATACT ACTCTATTAG TTATTGCCAT
TACTTGTGAA ACTTCGATTT TCTTGAAGTT GTAAGTACCT GCTTCTGAAG TTATTATTAT TATTATTTCT CAATGTCAAT
TAATTTTTAC GTTTGACTAG CCAAGACAAT GA

>Vigan.04G329400.01
ATGGAGACAC GTTGTGAGAT AACGCATTCA AAGTTCAACA GGATTTGTGT GTTCTGTGGA AGTAGCCCCG GCAAGAAGAG
TAGCTATCAA GATGCTGCCA TTGAGCTCGG CAATGAACTG GTCTCAAGGA ACATCGATCT GGTGTATGGA GGGGGAAGCA
TTGGTCTAAT GGGTTTAGTT TCTCAAGCTG TTCATGATGG CGGTCGCCAT GTCATTGGAG TTATTCCCAA GACGCTCATG
CCTCGAGAGC TAACTGGTGA AACGGTGGGA GAAGTAAAAG CTGTTGCTGA TATGCACCAA AGAAAGGCAG AGATGGCCAA
ACATTCAGAT GCCTTTATTG CCTTACCAGG TGGATATGGG ACTCTAGAGG AGCTTCTTGA AGTCATAACC TGGGCACAAC
TTGGGATTCA TGACAAGCCG GTGGGATTAG TAAATGTTGA TGGATACTTC AATTCCTTGC TGTCATTTAT TGACAAAGCC
GTGGAAGAGG GATTTATCAG TCCAAATGCT CGTCACATAA TTGTATCAGC ACCAACAGCA AAGGAGTTGG TGAAGAAATT
GGAGGATTAC GTTCCCTGCC ATGAGGGTGT TGCTTCCAAG TTGAGCTGGC AGATAGAACA GCAGCTTGCA TACCCTCAAG
ATTATGACAT GTCAAGGTAG 

>Vigan.04G329400.01
METRCEITHS KFNRICVFCG SSPGKKSSYQ DAAIELGNEL VSRNIDLVYG GGSIGLMGLV SQAVHDGGRH VIGVIPKTLM
PRELTGETVG EVKAVADMHQ RKAEMAKHSD AFIALPGGYG TLEELLEVIT WAQLGIHDKP VGLVNVDGYF NSLLSFIDKA
VEEGFISPNA RHIIVSAPTA KELVKKLEDY VPCHEGVASK LSWQIEQQLA YPQDYDMSR*