GBrowse Details

Vigan.04G333000.01

Basic Information:
Name: Vigan.04G333000.01
Multiple alignment
Variant Information
Position: Chr04:45531620..45534268 (+ strand)
Length: 2649
Functional Information:
Description: Similar to Rhodanese/Cell cycle control phosphatase superfamily protein. [XP_007027444.1, Theobroma cacao]
InterPro: Rhodanese-like domain (IPR001763)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:50.29,37.95,32.34,49.61,63.55,83.11,73.61,33.40
Arabidopsis thaliana homolog: AT5G03455.1
Automatic updates:
Name: NM_001249788 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305790 (LOC100305790), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:45531620..45531718 (+ strand)
Length: 99
Type: five_prime_UTR
Position: Chr04:45531719..45531831 (+ strand)
Length: 113
Type: CDS
Position: Chr04:45531926..45532064 (+ strand)
Length: 139
Type: CDS
Position: Chr04:45533691..45533864 (+ strand)
Length: 174
Type: CDS
Position: Chr04:45533865..45534268 (+ strand)
Length: 404
Type: three_prime_UTR


>Vigan.04G333000.01
AAAAAAAAAA CAAAAAACAA AGAAGACGTG CACAGAACTA GGTAAAAAAA AAAACGGGAA ATTGGGTTGG TGCGTGTGGA
AATTTGAGTT AAATTTGAAA TGAGAAGAGT GGAGAGGCGA TACGAGATTA TGGCTCGCAG TATATCGTAC ATTACAGGCA
CACAACTTCT CTCTCTCAGA CGCCATCCAA GCATCGCCAT CGTCGATGTC AGGGACGATG AGAGGGGTTA CGATGGACAC
ATATCGGGGT CTCTTCATTA CGCAAGCGAT ACTTTCTCCG ATAACATTTC AAACCTCGTT CAGGCGGTTA AAGGCAAAGA
TACCGTCGTC TTCCACTGCG CTCTAAGCCA GGTTCGTGGC CCAACTTGTG CTAGGAGGCT TGTCAATTAT CTCGAGGAGA
ACAAGGAAGA TACAGGGATA AAGAACATTA TGGTGTTGGA ACGTGGCTTC AATGGGTGGG AAGCTTCTGG TAGACCTGTT
TGCCGCTGCA CTAATATTCC TTGCAAAGGA GAGTGTGAGC CTTAATCAAA GTCGCGTTTG CGGTTGCATG GAATCAAGGA
GGCATATGAA ATTTGTTGTG GGTGCACGCA TTTGTATACA AAATGTAAAA ACAGTTGGAT GACCGCTATG ATTGCATCAT
TATATCTTGG TAGAATCCTA TATATCATCA TAGGTAAACT GAATACCGTG TTTCTGTTTT GTCCATCACT TAATATGTAA
CAAAATCCTA CTATGAGAAT TGCTAAGAAT AACCAAGGTA CTTCTTTTCT TTGTGAACTT TCCTAATGTA TTGCATAACA
ATGATTGAGG GGATTCTACT TTGGCAATTT TCATGGGCTA GTCGTAGTGA AGACTTGGGA ATTCCCTGAA ACTCAATTAA
AGTTGTCCGT AACAAGTTTG CTAAAATGAA ATTGGATGTG CTTAACGGC

>Vigan.04G333000.01
ATGAGAAGAG TGGAGAGGCG ATACGAGATT ATGGCTCGCA GTATATCGTA CATTACAGGC ACACAACTTC TCTCTCTCAG
ACGCCATCCA AGCATCGCCA TCGTCGATGT CAGGGACGAT GAGAGGGGTT ACGATGGACA CATATCGGGG TCTCTTCATT
ACGCAAGCGA TACTTTCTCC GATAACATTT CAAACCTCGT TCAGGCGGTT AAAGGCAAAG ATACCGTCGT CTTCCACTGC
GCTCTAAGCC AGGTTCGTGG CCCAACTTGT GCTAGGAGGC TTGTCAATTA TCTCGAGGAG AACAAGGAAG ATACAGGGAT
AAAGAACATT ATGGTGTTGG AACGTGGCTT CAATGGGTGG GAAGCTTCTG GTAGACCTGT TTGCCGCTGC ACTAATATTC
CTTGCAAAGG AGAGTGTGAG CCTTAA

>Vigan.04G333000.01
MRRVERRYEI MARSISYITG TQLLSLRRHP SIAIVDVRDD ERGYDGHISG SLHYASDTFS DNISNLVQAV KGKDTVVFHC
ALSQVRGPTC ARRLVNYLEE NKEDTGIKNI MVLERGFNGW EASGRPVCRC TNIPCKGECE P*