GBrowse Details

Vigan.04G334200.01

Basic Information:
Name: Vigan.04G334200.01
Multiple alignment
Variant Information
Position: Chr04:45615719..45619917 (+ strand)
Length: 4199
Functional Information:
Description: Similar to triosephosphate isomerase, chloroplastic. [XP_003554399.1, Glycine max]
GO: Biological Process: glycolysis (GO:0006096)
Biological Process: metabolic process (GO:0008152)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: triose-phosphate isomerase activity (GO:0004807)
InterPro: Triosephosphate isomerase (IPR000652)
Aldolase-type TIM barrel (IPR013785)
Triosephosphate isomerase, active site (IPR020861)
Triosephosphate isomerase, bacterial/eukaryotic (IPR022896)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:249.45,187.90,107.52,288.82,174.85,197.14,72.79,85.02
Arabidopsis thaliana homolog: AT2G21170.1
Automatic updates:
Name: NM_001253966 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max triosephosphate isomerase, chloroplastic-like (LOC100799358), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:45615719..45615999 (+ strand)
Length: 281
Type: five_prime_UTR
Position: Chr04:45616000..45616176 (+ strand)
Length: 177
Type: CDS
Position: Chr04:45616443..45616469 (+ strand)
Length: 27
Type: CDS
Position: Chr04:45617292..45617361 (+ strand)
Length: 70
Type: CDS
Position: Chr04:45618007..45618130 (+ strand)
Length: 124
Type: CDS
Position: Chr04:45618367..45618451 (+ strand)
Length: 85
Type: CDS
Position: Chr04:45618563..45618695 (+ strand)
Length: 133
Type: CDS
Position: Chr04:45618794..45618967 (+ strand)
Length: 174
Type: CDS
Position: Chr04:45619300..45619382 (+ strand)
Length: 83
Type: CDS
Position: Chr04:45619479..45619535 (+ strand)
Length: 57
Type: CDS
Position: Chr04:45619536..45619917 (+ strand)
Length: 382
Type: three_prime_UTR


>Vigan.04G334200.01
TATTGTTCCT GGACATGATT ACTCTGCTAT GTTCATGTGT AGGGACCACA TAGTTGAACT CAGCAATTCA AGAACCAAGA
AAACCATGGC CTTCTTAAGT TACTTGTTTA ACTTGGTAGG TGCGTATTAA ATAGTAAAAC AGTAAAAAGT AACACACTCT
CTCACCAACC AACACCAAAC TACAAAACCA AAATCTAATC CAAACCTTAA AATTTACTAC TAGTTTCGCA CTCACCTCAA
CCGCAACCCA ACACTGTTCT TGTTCTTCAT CTTCTTCTTC CATGGCAGCA ACCTCAACAT CACTGGCTTC TCAACTCTAC
ATTGGCCTGC GCCGCCCCTG CCCCAAGCTC GATTCTTTCA ATTCTCCGTC TTTTTCTGCC TTCGACCCTA ATCTTCGCCT
CTCCCTCTCT CCTCCCAAAC CCTCACGCGC CGTTGTCGCC ATGGCCGGCT CTGGCAAGTT CTTCGTTGGG GGCAACTGGA
AGTGTAACGG AACAAAAGAT TCCATCAGTA AGCTTGTCGC TGACTTGAAC AGTGCAAAAT TGGAGCCCGA TGTTGATGTC
GTTGTTGCAC CTCCCTTTCT GTACATCGAT CAAGTGAAAA GCTCACTTAC AGACCGGATT GAAATATCTG CCCAGAATTC
TTGGGTTGGT AAAGGTGGTG CTTTCACTGG AGAAATCAGT GCTGAACAAG TGAAAGATAT TGGATGCAAG TGGGTTGTTC
TTGGACATTC TGAGCGAAGA CATATTATTG GAGAAAATGA TGAGTTTATA GGAAAGAAAG CTGCCTATGC TTTGAACCAG
GGTCTTGGAG TGATTGCATG CATAGGAGAA TTGTTAGAAG AAAGGGAAGC AGGGAGAACT TTTGATGTTT GCTTTCAACA
ATTGAAGGCT TATGCTGATG CTGTTCCTAG TTGGGACAAT ATTGTTATTG CATATGAACC TGTATGGGCC ATTGGAACTG
GCAAAGTGGC CACTCCCCAG CAGGCTCAGG AAGTACATGT AGCTCTTCGG GATTGGCTGA AAAAGAATGT CTCAGATGAA
GTTGCATCTA AAACACGAAT TATTTATGGA GGGTCTGTAA ATGGAGGGAA CAGTGCTGAG CTGGCAAAGC AAGAGGATAT
CGATGGATTT CTCGTTGGAG GTGCTTCATT GAAGGGTCCT GAGTTTGCTA CCATTGTGAA TTCAGTCACA TCCAAGAAAG
TTGCGGCTTG ATTACTTATT GTAGTTTGGG CAATATGAGA GGGCAATTCT CAAATGTGGC AATAAATAAT ATGGGTCTAT
TATAATAATA GCACTTTGCT TTTGTCATCC TGAGTTTTTC CAAAGAGCCA GTATTTTCTT TCGATTAGAG ATACAGAGAG
GCAATAAATT TTAAATGTTT CTGAATTATT GTTGTTTTCT CATAACGTCA CTGTTAAATC TTGAATTTTA TTTTCTTTTT
ATGGTCGCTC TCAGTGATGT GGTCTGGACT TTTGTGACTC GAAATGTGCC TTCATAAGTT CACTTTCTGC GTATTGTGAT
GAAGCTTAAC ATACTTTTTA GATTAAACTT ATTTATCGTC CAATCGAACA ATTCAGATAG TTATATGAGA AGA

>Vigan.04G334200.01
ATGGCAGCAA CCTCAACATC ACTGGCTTCT CAACTCTACA TTGGCCTGCG CCGCCCCTGC CCCAAGCTCG ATTCTTTCAA
TTCTCCGTCT TTTTCTGCCT TCGACCCTAA TCTTCGCCTC TCCCTCTCTC CTCCCAAACC CTCACGCGCC GTTGTCGCCA
TGGCCGGCTC TGGCAAGTTC TTCGTTGGGG GCAACTGGAA GTGTAACGGA ACAAAAGATT CCATCAGTAA GCTTGTCGCT
GACTTGAACA GTGCAAAATT GGAGCCCGAT GTTGATGTCG TTGTTGCACC TCCCTTTCTG TACATCGATC AAGTGAAAAG
CTCACTTACA GACCGGATTG AAATATCTGC CCAGAATTCT TGGGTTGGTA AAGGTGGTGC TTTCACTGGA GAAATCAGTG
CTGAACAAGT GAAAGATATT GGATGCAAGT GGGTTGTTCT TGGACATTCT GAGCGAAGAC ATATTATTGG AGAAAATGAT
GAGTTTATAG GAAAGAAAGC TGCCTATGCT TTGAACCAGG GTCTTGGAGT GATTGCATGC ATAGGAGAAT TGTTAGAAGA
AAGGGAAGCA GGGAGAACTT TTGATGTTTG CTTTCAACAA TTGAAGGCTT ATGCTGATGC TGTTCCTAGT TGGGACAATA
TTGTTATTGC ATATGAACCT GTATGGGCCA TTGGAACTGG CAAAGTGGCC ACTCCCCAGC AGGCTCAGGA AGTACATGTA
GCTCTTCGGG ATTGGCTGAA AAAGAATGTC TCAGATGAAG TTGCATCTAA AACACGAATT ATTTATGGAG GGTCTGTAAA
TGGAGGGAAC AGTGCTGAGC TGGCAAAGCA AGAGGATATC GATGGATTTC TCGTTGGAGG TGCTTCATTG AAGGGTCCTG
AGTTTGCTAC CATTGTGAAT TCAGTCACAT CCAAGAAAGT TGCGGCTTGA 

>Vigan.04G334200.01
MAATSTSLAS QLYIGLRRPC PKLDSFNSPS FSAFDPNLRL SLSPPKPSRA VVAMAGSGKF FVGGNWKCNG TKDSISKLVA
DLNSAKLEPD VDVVVAPPFL YIDQVKSSLT DRIEISAQNS WVGKGGAFTG EISAEQVKDI GCKWVVLGHS ERRHIIGEND
EFIGKKAAYA LNQGLGVIAC IGELLEEREA GRTFDVCFQQ LKAYADAVPS WDNIVIAYEP VWAIGTGKVA TPQQAQEVHV
ALRDWLKKNV SDEVASKTRI IYGGSVNGGN SAELAKQEDI DGFLVGGASL KGPEFATIVN SVTSKKVAA*