VIGGS:GBrowse

Vigan.04G334300.01

Basic Information:

Name:	Vigan.04G334300.01 Multiple alignment Variant Information
Position:	Chr04:45623771..45625798 (- strand)
Length:	2028

Functional Information:

Description:	Similar to Water-selective transport intrinsic membrane protein 1. [K7VJZ5, Phaseolus vulgaris]
GO:	Biological Process: transport (GO:0006810)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: transporter activity (GO:0005215)
InterPro:	Major intrinsic protein (IPR000425)
	Major intrinsic protein, conserved site (IPR022357)
	Aquaporin-like (IPR023271)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:484.74,198.66,1057.50,1009.10,411.89,1106.57,905.12,902.92
Arabidopsis thaliana homolog:	AT2G36830.1

Automatic updates:

Name:	KT736297 NCBI(nuccore)
Organism:	Vigna radiata
Description:	Vigna radiata tonoplast intrinsic protein (TIP1;1) mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Name:	MK133346 NCBI(nuccore)
Organism:	Arachis hypogaea
Description:	Arachis hypogaea strain Zhongkaihua 10 tonoplast intrinsic protein 1 (TIP1) mRNA, complete cds.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001250133 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527509 (LOC100527509), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:45623771..45624640 (- strand)
Length:	870
Type:	three_prime_UTR

Position:	Chr04:45624641..45625012 (- strand)
Length:	372
Type:	CDS

Position:	Chr04:45625108..45625488 (- strand)
Length:	381
Type:	CDS

Position:	Chr04:45625489..45625798 (- strand)
Length:	310
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G334300.01
ATGAAGAACA TGTCACAGCT GTCAAGAAAT AAGATTATTT CTTTTCTGGA TTGGTGTTTC AGAAAAGCTT GATTCCTGTC
ATATTTGGAA GTATTGATCA TGATTTCTTA ACATGAAAAA TAGGAAAATA GAAATAACCG GGAACCGGGT AGAGCCGGTG
GACTCAGAGG CAGGTGCGTC TTGAGAGTGG GTATATAACA AGCAAAGGAG CGAAAACCAG TGGCAGCGAA ACAGAGAGTG
ATTTGAGTGA GTGATCTCGG TGTTCACTTC ATCTTTCACC AGTCGTAATC ATCACCACCG TCGATTGAAG ATGCCGATCA
GAAACATCGC CATCGGAAGG CCCGAGGAGG CCACTCACCC CGACACGTTG AAGGCGGCTT TGGCCGAGTT CATCTCCACC
CTCATCTTCG TGTTCGCCGG CTCAGGCTCC GGCATCGCCT ACAACAAGCT CACTGACAAC GGCGCCGCCA CACCTGCCGG
ACTCATCTCC GCCTCCATCG CCCACGCATT CGGCCTTTTT GTCGCCGTCT CCGTCGGCGC TAACATCTCC GGAGGTCACG
TGAACCCCGC CGTCACCTTC GGCGCCTTCG TCGGAGGCAA CATCACCTTC CTCCGCGGTA TCGTCTACAT CATCGCCCAG
CTCCTGGGCT CCGTGGTGGC CTCCCTCCTC CTGGCCTTCG TGACCTCCTC CACTGTTCCC GCATTTGGAC TCTCAGCTGG
AGTTGGAGTT GGTAACGCTT TGGTGTTGGA GATCGTGATG ACTTTCGGTT TGGTGTACAC TGTCTACGCT ACCGCCGTTG
ACCCCAAGAG GGGTACTTTG GGAACCATCG CTCCCATCGC CATTGGTTTC ATCGTTGGCG CTAACATTTT GTTGGGTGGG
GCCTTCTCAG GAGCAGCCAT GAACCCTGCC GTCACATTCG GACCTGCCGT TGTTAGCTGG ACCTGGGACA ACAACTGGAT
CTACTGGGTC GGCCCTCTCA TCGGTGGTGG CCTCGCCGGA GTCATCTACG AGGTCGTCTT CATCAGCCAC ACCCACGAGC
AGCTCCCAAC CACTGACTAC TAGACCCGAA ATCACAAAAA TAAACAAAAA AAAAAATTTG TCTATTATTG AATTTCTCTT
CGATCCTCTT CTGTGTATGT TTTTTTTCCT TGTGTTTCTC TTCATTCTAC TTTCGCGGGT TGTTCCTTTC GTGTTGAATC
GGTGGACTTT GATCTTTGGT TGGATGGTTG ATGATCATGT TCTCTTTTAA GTTAAATTAT CATCATTTGT GCATCCTCTC
TCTGTCTCTC TCTTTCTCAC CTGGTCCACC ATGGATGTAT CATTATTGGG GTCTGGCTGA ATGTACCATT TCACTGCTGC
TTCTGTCGAA TTGAAATGTT TTCCTCTTTT TTCTAATTTC TTGCACAGTT CTAATTTATT AAACCCTTAA TCTGTCAATC
ATTGCGACAA TGAACAAACT GTCCAGAGAA GAAGATTGAA CTAAAAAAAA AAATGAAAAA AAGTTAATCA TGGCATGCGA
CAAAAGTTCT TAAAGGGAGA ATCGTTGAGG CACATGCAAG AAGTGGGTCC ATCAGCGTGG ATGGGTAATT CACTTCCCTA
ACGAAGACGT ACGAGTACCG ACCACAGTAT CGGACTATTA AAAGCCAGGA AGAATGATTG TAGAGCGTTG ATTAGAGAAA
GGAACTAAAC CAGATTCAAC TGGATCATAT AGCTATGCAT CTATCGTCAC TCATTAATAA CTTTTTCCAG AAATCTAGTT
TGTCTCCTTG TTTGGGAATA ATGCACCCTT TCAGAGGCTT CCAATATGTG AAGCTATTGT ATTTATTTTA TCTAATATTA
TTGAGAATTG GATAACAAAG CAAGATTCTA TATCATAAAT TTAGATGATG TACAACGTTA TATCTTATAT TATGTATCTT
GATTTTCAAA TTA

[show][hide][copy]CDS

>Vigan.04G334300.01
ATGCCGATCA GAAACATCGC CATCGGAAGG CCCGAGGAGG CCACTCACCC CGACACGTTG AAGGCGGCTT TGGCCGAGTT
CATCTCCACC CTCATCTTCG TGTTCGCCGG CTCAGGCTCC GGCATCGCCT ACAACAAGCT CACTGACAAC GGCGCCGCCA
CACCTGCCGG ACTCATCTCC GCCTCCATCG CCCACGCATT CGGCCTTTTT GTCGCCGTCT CCGTCGGCGC TAACATCTCC
GGAGGTCACG TGAACCCCGC CGTCACCTTC GGCGCCTTCG TCGGAGGCAA CATCACCTTC CTCCGCGGTA TCGTCTACAT
CATCGCCCAG CTCCTGGGCT CCGTGGTGGC CTCCCTCCTC CTGGCCTTCG TGACCTCCTC CACTGTTCCC GCATTTGGAC
TCTCAGCTGG AGTTGGAGTT GGTAACGCTT TGGTGTTGGA GATCGTGATG ACTTTCGGTT TGGTGTACAC TGTCTACGCT
ACCGCCGTTG ACCCCAAGAG GGGTACTTTG GGAACCATCG CTCCCATCGC CATTGGTTTC ATCGTTGGCG CTAACATTTT
GTTGGGTGGG GCCTTCTCAG GAGCAGCCAT GAACCCTGCC GTCACATTCG GACCTGCCGT TGTTAGCTGG ACCTGGGACA
ACAACTGGAT CTACTGGGTC GGCCCTCTCA TCGGTGGTGG CCTCGCCGGA GTCATCTACG AGGTCGTCTT CATCAGCCAC
ACCCACGAGC AGCTCCCAAC CACTGACTAC TAG

[show][hide][copy]PROTEIN

>Vigan.04G334300.01
MPIRNIAIGR PEEATHPDTL KAALAEFIST LIFVFAGSGS GIAYNKLTDN GAATPAGLIS ASIAHAFGLF VAVSVGANIS
GGHVNPAVTF GAFVGGNITF LRGIVYIIAQ LLGSVVASLL LAFVTSSTVP AFGLSAGVGV GNALVLEIVM TFGLVYTVYA
TAVDPKRGTL GTIAPIAIGF IVGANILLGG AFSGAAMNPA VTFGPAVVSW TWDNNWIYWV GPLIGGGLAG VIYEVVFISH
THEQLPTTDY *