GBrowse Details

Vigan.04G343100.01

Basic Information:
Name: Vigan.04G343100.01
Multiple alignment
Variant Information
Position: Chr04:46546500..46560410 (- strand)
Length: 13911
Functional Information:
Description: Similar to Starch branching enzyme II. [Q4VUI1, Vigna radiata]
GO: Biological Process: carbohydrate metabolic process (GO:0005975)
Biological Process: glycogen biosynthetic process (GO:0005978)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: 1,4-alpha-glucan branching enzyme activity (GO:0003844)
Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds (GO:0004553)
Molecular Function: cation binding (GO:0043169)
InterPro: Glycoside hydrolase, family 13, N-terminal (IPR004193)
Glycosyl hydrolase, family 13, catalytic domain (IPR006047)
Alpha-amylase, C-terminal all beta (IPR006048)
1,4-alpha-glucan-branching enzyme, GlgB (IPR006407)
Glycosyl hydrolase, family 13, subfamily, catalytic domain (IPR006589)
Glycosyl hydrolase, family 13, all-beta (IPR013780)
Glycoside hydrolase, catalytic domain (IPR013781)
Immunoglobulin-like fold (IPR013783)
Immunoglobulin E-set (IPR014756)
Glycoside hydrolase, family 13 (IPR015902)
Glycoside hydrolase, superfamily (IPR017853)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:9.06,10.60,6.00,56.12,3.97,31.76,2.16,12.17
Arabidopsis thaliana homolog: AT2G36390.1, AT5G03650.1
Automatic updates:
Name: NM_001317322 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata 1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic-like (LOC106757609), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:46546500..46547264 (- strand)
Length: 765
Type: three_prime_UTR
Position: Chr04:46547265..46547432 (- strand)
Length: 168
Type: CDS
Position: Chr04:46547579..46547653 (- strand)
Length: 75
Type: CDS
Position: Chr04:46547774..46547929 (- strand)
Length: 156
Type: CDS
Position: Chr04:46548109..46548186 (- strand)
Length: 78
Type: CDS
Position: Chr04:46549161..46549261 (- strand)
Length: 101
Type: CDS
Position: Chr04:46549375..46549522 (- strand)
Length: 148
Type: CDS
Position: Chr04:46549815..46549959 (- strand)
Length: 145
Type: CDS
Position: Chr04:46550083..46550186 (- strand)
Length: 104
Type: CDS
Position: Chr04:46550422..46550550 (- strand)
Length: 129
Type: CDS
Position: Chr04:46551267..46551377 (- strand)
Length: 111
Type: CDS
Position: Chr04:46551489..46551618 (- strand)
Length: 130
Type: CDS
Position: Chr04:46551787..46551906 (- strand)
Length: 120
Type: CDS
Position: Chr04:46552123..46552244 (- strand)
Length: 122
Type: CDS
Position: Chr04:46553827..46553910 (- strand)
Length: 84
Type: CDS
Position: Chr04:46554244..46554360 (- strand)
Length: 117
Type: CDS
Position: Chr04:46554849..46554929 (- strand)
Length: 81
Type: CDS
Position: Chr04:46555183..46555242 (- strand)
Length: 60
Type: CDS
Position: Chr04:46556110..46556152 (- strand)
Length: 43
Type: CDS
Position: Chr04:46556901..46556999 (- strand)
Length: 99
Type: CDS
Position: Chr04:46557358..46557587 (- strand)
Length: 230
Type: CDS
Position: Chr04:46558314..46558468 (- strand)
Length: 155
Type: CDS
Position: Chr04:46559718..46559838 (- strand)
Length: 121
Type: CDS
Position: Chr04:46559839..46560410 (- strand)
Length: 572
Type: five_prime_UTR


>Vigan.04G343100.01
TAATTTTATG ATTTGAAAAA GGGGACGCAA GGCAAGGCAT ATACTTGCCA CAAAGCAAAA GATCCTTTAA CATTTCATTC
ATGAAACTTT TCCCTTTTCC TAAACTATAG AAAGGAGGAC AACATACAAG AGAAAAGAGA AAAGCAAAAA GGAAAATATC
TGTGAAGCGC GTCCATAGCC AAGCATTTCA TATCCAAGTG CTATTCGTTT GGCGAAGACG ATGGACGATC AGAATTCAAG
AGCAGTGGGC CCCATAAGTT TCATTACCAT GCTGTTTGGA CTGTAAACAA GCACACGTAG CACATCACTC GCAGTCTTGT
TGTCACCTCC ACGCAGATAG CGCCACCCTT CACCGTACAA TTTCATTTTC TTTATTATTT GTTTAAATAA ATTTCAGAAT
TTAACTCCAC ATTATTACTA TATATAATAT CACTCCTTCT CAGAGTGTCA CGCTTCTCTC GACACCTCGA ACTCAGCACA
CTCTCACTTT TGGATCTGTT CTTCTGCTTC TGAGAGAACA TTCACTTCTT CTCTCCTAAA TATCAAAGAC TAAACCCTAA
GTGCAGGCAA AGATGGTTTA CACCATCTCC GGAATTCGAT TTCCGGTTGT TCCTTCGCTG CATGTCTCCA GCCTCCGTGA
CGATCGCAGG GCAGCGTCTC TTCCTGTTTT TCTCAGAAAG AACAACTTCT CTCGGAAAAT CCTTGCCGTA AAATCTTCTC
ATGATTCTGA TTCCCCATCT TCTGCAATTG CTGAATCTGA TAAGGTTCTT ATTTCTCAAG ATCAAGATAA CTCTGCATCC
TTGACAGAGC AACTTGAAAC TCCTGTTATA ACCTCAGAGG ATGCACATAA TTTAGAGGAT TTAACAATGG AAGATGAGGA
TAAATACAGC ATTAGTGAAG CAGATACCAG TTACAGACAG ATTGAAGGTG GGCTAGGTTC GGTGGTATCT GTTGGCAAGA
AAGTAAAGAT ACCAAGTGAT GAAGCTAAAC CTAAGACCAT TCCCCGACCT GGTGCTGGAC AGAAAATATA TGAGATTGAT
CCATCTTTGC TAGCCCACCG TGAGCATCTT GATTTCCGTT TCGGACAATA CAAAAGATTG CACGATGAAA TTAACAAGTA
TGAAGGTGGT CTGGATACAT TTTCTCGTGG CTATGAAAAA TTTGGCTTCA TACGCAGTGC AACAGGTGTT ACTTACAGAG
AGTGGGCACC TGGAGCTAAG TCAGCAGCAT TAATTGGAGA CTTCAACAAT TGGAATTCAA ATGCTGATGT AATGGCTCGG
AATGAGTTTG GTGTTTGGGA GATTTTTTTG CCAAACAATG TGGATGGTTC ACCACCAATT CCTCATGGTT CTCGGGTCAA
GATCCGCATG GATACTCCCT CTGGAGTCAA GGACTCGATT CCTGCTTGGA TCAAGTTTTC TGTACAGGCT CCTGGTGAAA
TTCCATATAG CGGAATATAC TATGATCCCC CAGAAGAGGA AAAATATGTA TTCAAACATC CACAGCCAAA GAGACCAAAA
TCACTTAGAA TATACGAGTC ACATGTTGGA ATGAGTAGTC CGGAGCCAAT GATCAACACA TATGCCAATT TTAGAGATGA
TGTACTACCT CGCATTAAAA AGCTTGGCTA CAATGCTGTC CAGATTATGG CCATTCAAGA ACATTCTTAT TATGCCAGCT
TTGGGTACCA TGTCACAAAT TTCTTTGCAC CTAGCAGCCG ATTTGGAACT CCAGAGGAAC TTAAATCTCT AATAGACAAA
GCCCACGAAC TAGGTCTGCT TGTTCTGATG GATATTGTAC ACAGCCATTC ATCAAATAAT ACTTTGGATG GCCTAAACAT
GTTTGATGGA ACTGATAGTC ATTACTTCCA TCCTGGGTCA CGAGGTTATC ATTGGATGTG GGATTCTCGC CTTTTCAATT
ATGGAAGCTG GGAAGTACTA AGGTATCTAC TTTCAAATGC AAGATGGTGG CTGGATGAAT ACAAGTTTGA CGGATTTCGA
TTTGATGGTG TTACATCAAT GATGTACACT CATCATGGGT TGCAGGTAGC ATTCACTGGA AATTACAGTG AGTACTTTGG
TATGGCAACT GATGTTGATG CTGTGGTTTA CCTGATGCTG GCTAATGATC TCATTCATGG CCTCTTCCCC GAGGCTGTTA
CCATTGGTGA AGATGTGAGT GGAATGCCAA CATTCTGCCT TCCTACACAA GATGGTGGGG TTGGTTTTGA TTATCGCCTG
CAAATGGCCA TTGCAGACAA GTGGATTGAG ATTCTCAAGA AGCAAGATGA GGACTGGAAA ATGGGTGATA TTGTCCACAC
ACTAACAAAC AGAAGATGGC TGGAAAAATG TGTAGCTTAT GCTGAGAGTC ATGATCAGGC CTTGGTTGGT GACAAGACAA
TTGCATTTTG GTTGATGGAC AAGGATATGT ATGACTTCAT GGCGTTAGAC AGGCCATCTA CACCTCGTAT AGATCGTGGT
ATTGCATTAC ACAAAATGAT TAGGCTTATT ACCATGGGAC TTGGTGGTGA AGGGTATTTG AATTTTATGG GGAATGAGTT
TGGCCATCCT GAGTGGATTG ATTTTCCAAG GGGTGAACAA CAACTTCCTA ATGGCTCAGT AATTCCAGGG AACAACTACA
GTTATGATAA ATGCAGGCGA AGATTTGACT TGGGAGATGC GGATTATTTA AGATATCAAG GAATGCAAGA ATTTGATCGA
GCCATGCAGC TTTTAGAAGA AAAGTTTGGT TTCATGACTG CTGAACACCA ATATATTTCA CGGAAAAATG AAGGTGACAA
AGTTATAATC TTTGAAAGGG GCAACCTCGT CTTTGTCTTC AATTTTCATT GGCATAACAG CTATTCAGAT TACAGAGTTG
GCTGCTCAAC CCCTGGGAAA TATAAGATTG TTTTGGATTC AGATGATGCC TTGTTTGGTG GCTTCAATAG GCTCAACCAC
TCTGCTGAGT ACTTCACTAA TGAAGGATGG TATGATGACC GACCTCGATC CTTTCTCGTC TATGCACCTT CTAGAACAGC
AGCAGTTTAT GTCCTTGCAG ATGACGACGA TGATCTTGAA CCAGCCCTTT CAGATGAAGC TGAACCAGCC CTTGCAGATG
AAGCTGAACC AGAGCCAGTT GATCCTTGAT AAGAAGATTC TGGGACAAAT GTTACAAGTA CACGATGGCA GCAGTAAATC
CCCAGTGAAA CTAGCCAAAC CAATATCTTG TTGTTTAACC GACACTGAAA CACCAAAGAA GCATATTTGA AGTGGAATAA
GTGGGAGCGC TAGTTAATCT TTAGTGAGGC AGGACACTGA CTCGAAATCT TGTACATGTG CCTTGCTAGG TAATAATTGC
GATATCACAC CCATCTTTCT GTTTTTTCTT TTTAGGATTC AATGTCGTAA CCTGAGTCTC AAATGTCAAT CTCCATAATG
TATACTCTCC TAAGAGTTAG AGGCTTCAAA GGGACTTTTA TAGTGAAAAA TTTTGCAGGA GGCTGACTTT TGCTTTGGGG
TCTTTTTTCG GTAGCTGTCT CCTTTATATT TAAAAGTTGA GTTGTAGCAA TTCCTATCCG TGTAATAAAG ACATCATACG
TCGTGGAAAA AAGAAAGTAA AATAATTACC TTACTTTACG AAGGGTTGGT TGGACATTCA ATTCCTTTCA ACTTCTATTT
TTTAAAATTA GAATAGTTTA TATTCACGAC CAACAGCAAA TCACCGGTTT AATGTTCCAG AAGGAAATAT CAATGGCCAA
TGGGTTCAGT GCTTAGACTT TCCATCCCAA GAATTCAGGT TTCTGCATCC ATGTGCAAAA TTTTTATGGA TTTCAGTAAT
TTTAAGCAAA TTGTAATTCC TCATCGTCAT TTAAATCAAG ATTTCTGTTT TTTTATTTTA TATTTATAAA GTTG

>Vigan.04G343100.01
ATGGTTTACA CCATCTCCGG AATTCGATTT CCGGTTGTTC CTTCGCTGCA TGTCTCCAGC CTCCGTGACG ATCGCAGGGC
AGCGTCTCTT CCTGTTTTTC TCAGAAAGAA CAACTTCTCT CGGAAAATCC TTGCCGTAAA ATCTTCTCAT GATTCTGATT
CCCCATCTTC TGCAATTGCT GAATCTGATA AGGTTCTTAT TTCTCAAGAT CAAGATAACT CTGCATCCTT GACAGAGCAA
CTTGAAACTC CTGTTATAAC CTCAGAGGAT GCACATAATT TAGAGGATTT AACAATGGAA GATGAGGATA AATACAGCAT
TAGTGAAGCA GATACCAGTT ACAGACAGAT TGAAGGTGGG CTAGGTTCGG TGGTATCTGT TGGCAAGAAA GTAAAGATAC
CAAGTGATGA AGCTAAACCT AAGACCATTC CCCGACCTGG TGCTGGACAG AAAATATATG AGATTGATCC ATCTTTGCTA
GCCCACCGTG AGCATCTTGA TTTCCGTTTC GGACAATACA AAAGATTGCA CGATGAAATT AACAAGTATG AAGGTGGTCT
GGATACATTT TCTCGTGGCT ATGAAAAATT TGGCTTCATA CGCAGTGCAA CAGGTGTTAC TTACAGAGAG TGGGCACCTG
GAGCTAAGTC AGCAGCATTA ATTGGAGACT TCAACAATTG GAATTCAAAT GCTGATGTAA TGGCTCGGAA TGAGTTTGGT
GTTTGGGAGA TTTTTTTGCC AAACAATGTG GATGGTTCAC CACCAATTCC TCATGGTTCT CGGGTCAAGA TCCGCATGGA
TACTCCCTCT GGAGTCAAGG ACTCGATTCC TGCTTGGATC AAGTTTTCTG TACAGGCTCC TGGTGAAATT CCATATAGCG
GAATATACTA TGATCCCCCA GAAGAGGAAA AATATGTATT CAAACATCCA CAGCCAAAGA GACCAAAATC ACTTAGAATA
TACGAGTCAC ATGTTGGAAT GAGTAGTCCG GAGCCAATGA TCAACACATA TGCCAATTTT AGAGATGATG TACTACCTCG
CATTAAAAAG CTTGGCTACA ATGCTGTCCA GATTATGGCC ATTCAAGAAC ATTCTTATTA TGCCAGCTTT GGGTACCATG
TCACAAATTT CTTTGCACCT AGCAGCCGAT TTGGAACTCC AGAGGAACTT AAATCTCTAA TAGACAAAGC CCACGAACTA
GGTCTGCTTG TTCTGATGGA TATTGTACAC AGCCATTCAT CAAATAATAC TTTGGATGGC CTAAACATGT TTGATGGAAC
TGATAGTCAT TACTTCCATC CTGGGTCACG AGGTTATCAT TGGATGTGGG ATTCTCGCCT TTTCAATTAT GGAAGCTGGG
AAGTACTAAG GTATCTACTT TCAAATGCAA GATGGTGGCT GGATGAATAC AAGTTTGACG GATTTCGATT TGATGGTGTT
ACATCAATGA TGTACACTCA TCATGGGTTG CAGGTAGCAT TCACTGGAAA TTACAGTGAG TACTTTGGTA TGGCAACTGA
TGTTGATGCT GTGGTTTACC TGATGCTGGC TAATGATCTC ATTCATGGCC TCTTCCCCGA GGCTGTTACC ATTGGTGAAG
ATGTGAGTGG AATGCCAACA TTCTGCCTTC CTACACAAGA TGGTGGGGTT GGTTTTGATT ATCGCCTGCA AATGGCCATT
GCAGACAAGT GGATTGAGAT TCTCAAGAAG CAAGATGAGG ACTGGAAAAT GGGTGATATT GTCCACACAC TAACAAACAG
AAGATGGCTG GAAAAATGTG TAGCTTATGC TGAGAGTCAT GATCAGGCCT TGGTTGGTGA CAAGACAATT GCATTTTGGT
TGATGGACAA GGATATGTAT GACTTCATGG CGTTAGACAG GCCATCTACA CCTCGTATAG ATCGTGGTAT TGCATTACAC
AAAATGATTA GGCTTATTAC CATGGGACTT GGTGGTGAAG GGTATTTGAA TTTTATGGGG AATGAGTTTG GCCATCCTGA
GTGGATTGAT TTTCCAAGGG GTGAACAACA ACTTCCTAAT GGCTCAGTAA TTCCAGGGAA CAACTACAGT TATGATAAAT
GCAGGCGAAG ATTTGACTTG GGAGATGCGG ATTATTTAAG ATATCAAGGA ATGCAAGAAT TTGATCGAGC CATGCAGCTT
TTAGAAGAAA AGTTTGGTTT CATGACTGCT GAACACCAAT ATATTTCACG GAAAAATGAA GGTGACAAAG TTATAATCTT
TGAAAGGGGC AACCTCGTCT TTGTCTTCAA TTTTCATTGG CATAACAGCT ATTCAGATTA CAGAGTTGGC TGCTCAACCC
CTGGGAAATA TAAGATTGTT TTGGATTCAG ATGATGCCTT GTTTGGTGGC TTCAATAGGC TCAACCACTC TGCTGAGTAC
TTCACTAATG AAGGATGGTA TGATGACCGA CCTCGATCCT TTCTCGTCTA TGCACCTTCT AGAACAGCAG CAGTTTATGT
CCTTGCAGAT GACGACGATG ATCTTGAACC AGCCCTTTCA GATGAAGCTG AACCAGCCCT TGCAGATGAA GCTGAACCAG
AGCCAGTTGA TCCTTGA

>Vigan.04G343100.01
MVYTISGIRF PVVPSLHVSS LRDDRRAASL PVFLRKNNFS RKILAVKSSH DSDSPSSAIA ESDKVLISQD QDNSASLTEQ
LETPVITSED AHNLEDLTME DEDKYSISEA DTSYRQIEGG LGSVVSVGKK VKIPSDEAKP KTIPRPGAGQ KIYEIDPSLL
AHREHLDFRF GQYKRLHDEI NKYEGGLDTF SRGYEKFGFI RSATGVTYRE WAPGAKSAAL IGDFNNWNSN ADVMARNEFG
VWEIFLPNNV DGSPPIPHGS RVKIRMDTPS GVKDSIPAWI KFSVQAPGEI PYSGIYYDPP EEEKYVFKHP QPKRPKSLRI
YESHVGMSSP EPMINTYANF RDDVLPRIKK LGYNAVQIMA IQEHSYYASF GYHVTNFFAP SSRFGTPEEL KSLIDKAHEL
GLLVLMDIVH SHSSNNTLDG LNMFDGTDSH YFHPGSRGYH WMWDSRLFNY GSWEVLRYLL SNARWWLDEY KFDGFRFDGV
TSMMYTHHGL QVAFTGNYSE YFGMATDVDA VVYLMLANDL IHGLFPEAVT IGEDVSGMPT FCLPTQDGGV GFDYRLQMAI
ADKWIEILKK QDEDWKMGDI VHTLTNRRWL EKCVAYAESH DQALVGDKTI AFWLMDKDMY DFMALDRPST PRIDRGIALH
KMIRLITMGL GGEGYLNFMG NEFGHPEWID FPRGEQQLPN GSVIPGNNYS YDKCRRRFDL GDADYLRYQG MQEFDRAMQL
LEEKFGFMTA EHQYISRKNE GDKVIIFERG NLVFVFNFHW HNSYSDYRVG CSTPGKYKIV LDSDDALFGG FNRLNHSAEY
FTNEGWYDDR PRSFLVYAPS RTAAVYVLAD DDDDLEPALS DEAEPALADE AEPEPVDP*