GBrowse Details

Vigan.04G345400.01

Basic Information:
Name: Vigan.04G345400.01
Multiple alignment
Variant Information
Position: Chr04:46788615..46792903 (- strand)
Length: 4289
Functional Information:
Description: Similar to Uncharacterized protein. [I1NAM8, Glycine max]
GO: Biological Process: iron-sulfur cluster assembly (GO:0016226)
Molecular Function: structural molecule activity (GO:0005198)
Molecular Function: iron-sulfur cluster binding (GO:0051536)
InterPro: FeS cluster biogenesis (IPR000361)
FeS cluster insertion protein (IPR016092)
FeS cluster insertion, C-terminal, conserved site (IPR017870)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:74.84,37.65,15.91,28.60,16.04,7.64,7.12,11.54
Arabidopsis thaliana homolog: AT2G16710.3
Automatic updates:
Name: NM_001255036 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max iron-sulfur assembly protein IscA-like 1, mitochondrial-like (LOC100777750), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:46788615..46789151 (- strand)
Length: 537
Type: three_prime_UTR
Position: Chr04:46789152..46789248 (- strand)
Length: 97
Type: CDS
Position: Chr04:46791327..46791444 (- strand)
Length: 118
Type: CDS
Position: Chr04:46792520..46792709 (- strand)
Length: 190
Type: CDS
Position: Chr04:46792710..46792903 (- strand)
Length: 194
Type: five_prime_UTR


>Vigan.04G345400.01
ATTGTTTGAG CTCTGATAAA ATTACTGGGG AGGTGACAGA CAGATATAAT TAGGCCACAC AAGCACAGAG CATAGGTTTC
ATCGGGAACG TTCTACGAAT AGCCTAGCAT AGCCACAAAC GTGGTGGCCA CGCGCCAAAC CTGAAAAAGA GAGGAACCGT
CCTAAAACAA CAGGACACGG ATAGTTAATC TTCGATGGCT TCGAAGGCGA TGAGCGTGGC AGCGGTGAAG ATAGGGACGG
CGGCGCGCCG CCAAGCCGTG TCGTTGACGG ATGCCGCAGC CTCGCGTATA CGGCAGCTGC TACAGCAGCG TCAGAGGCCC
TTCTTGAAGC TCGGAGTCAA GGCTCGCGGC TGCAACGGCT TATCCTACAC CCTCAATTAC GCAGATGAAA AAGGAAGGTT
TGATGAGTTG GTTGAGGATA AGGGTGTTAA GATATTGATT GATCCAAAGG CCCTTATGCA TGTCATTGGA ACTAAAATGG
ATTTTGTAGA TGACAAACTG AGATCGGAAT TTATTTTCGT CAATCCAAAT TCTAAAGGTC AGTGTGGTTG TGGTGAATCT
TTCATGACAA CAGGCAGTAG TGGCTCTTCT AAGTCATGAA ATGGTTAAAA TCGCTATTAA ACTTGCTGTG GATCCTCACG
TATAAAGTAG TCCTGTCACG AATAGATAGA CATACAAGTA CAACTAATGG ATTTCTACAA TTCTGCCTGT TTCAACTAGG
AAAACGAGAG CTTTAGGTGT TCAGAACTAA AGGATACTGA GACTGACGTG GTCTCAGTAT ACGAGTTCTC TGGAGCTGAT
GCTAATAAGG CCTATCATTT GTTCGGATGA TTCTTATTCA TCATGTAATT CTTTATATCA TGAAAATTGT AGTTTGTAGT
TTAACAATAT CTTGGAAATA ATTTAAGTTT AAAATATCAT TCAACGCATT CAGAACTGAA GAAACTTTTC TTAGAATTCT
TTGGTCAGCT TATATATCAC GCTTTCACTT GAATTATTAC GAATTATCAT TTCTGGTTGA ATGGCATGGC CTTAAGCTAC
ACAAGCTGGG ACCTAGGCAA AGAAACTGCA TTGAGTTTTT GTATTTCACA TTTTTATTAT GTTTGTATTT CACAATTGAC
CTGACTATAA TGGCAC

>Vigan.04G345400.01
ATGGCTTCGA AGGCGATGAG CGTGGCAGCG GTGAAGATAG GGACGGCGGC GCGCCGCCAA GCCGTGTCGT TGACGGATGC
CGCAGCCTCG CGTATACGGC AGCTGCTACA GCAGCGTCAG AGGCCCTTCT TGAAGCTCGG AGTCAAGGCT CGCGGCTGCA
ACGGCTTATC CTACACCCTC AATTACGCAG ATGAAAAAGG AAGGTTTGAT GAGTTGGTTG AGGATAAGGG TGTTAAGATA
TTGATTGATC CAAAGGCCCT TATGCATGTC ATTGGAACTA AAATGGATTT TGTAGATGAC AAACTGAGAT CGGAATTTAT
TTTCGTCAAT CCAAATTCTA AAGGTCAGTG TGGTTGTGGT GAATCTTTCA TGACAACAGG CAGTAGTGGC TCTTCTAAGT
CATGA

>Vigan.04G345400.01
MASKAMSVAA VKIGTAARRQ AVSLTDAAAS RIRQLLQQRQ RPFLKLGVKA RGCNGLSYTL NYADEKGRFD ELVEDKGVKI
LIDPKALMHV IGTKMDFVDD KLRSEFIFVN PNSKGQCGCG ESFMTTGSSG SSKS*