GBrowse Details

Vigan.04G345400.01

Basic Information:
Name: Vigan.04G345400.01
Multiple alignment
Variant Information
Position: Chr04:46788615..46792903 (- strand)
Length: 4289
Functional Information:
Description: Similar to Uncharacterized protein. [I1NAM8, Glycine max]
GO: Biological Process: iron-sulfur cluster assembly (GO:0016226)
Molecular Function: structural molecule activity (GO:0005198)
Molecular Function: iron-sulfur cluster binding (GO:0051536)
InterPro: FeS cluster biogenesis (IPR000361)
FeS cluster insertion protein (IPR016092)
FeS cluster insertion, C-terminal, conserved site (IPR017870)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:74.84,37.65,15.91,28.60,16.04,7.64,7.12,11.54
Arabidopsis thaliana homolog: AT2G16710.3
Automatic updates:
Name: NM_001255036 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max iron-sulfur assembly protein IscA-like 1, mitochondrial-like (LOC100777750), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:46788615..46789151 (- strand)
Length: 537
Type: three_prime_UTR
Position: Chr04:46789152..46789248 (- strand)
Length: 97
Type: CDS
Position: Chr04:46791327..46791444 (- strand)
Length: 118
Type: CDS
Position: Chr04:46792520..46792709 (- strand)
Length: 190
Type: CDS
Position: Chr04:46792710..46792903 (- strand)
Length: 194
Type: five_prime_UTR

>Vigan.04G345400.01 class=Sequence position=Chr04:46788615..46792903 (- strand)
ATTGTTTGAG CTCTGATAAA ATTACTGGGG AGGTGACAGA CAGATATAAT TAGGCCACAC AAGCACAGAG CATAGGTTTC
ATCGGGAACG TTCTACGAAT AGCCTAGCAT AGCCACAAAC GTGGTGGCCA CGCGCCAAAC CTGAAAAAGA GAGGAACCGT
CCTAAAACAA CAGGACACGG ATAGTTAATC TTCGATGGCT TCGAAGGCGA TGAGCGTGGC AGCGGTGAAG ATAGGGACGG
CGGCGCGCCG CCAAGCCGTG TCGTTGACGG ATGCCGCAGC CTCGCGTATA CGGCAGCTGC TACAGCAGCG TCAGAGGCCC
TTCTTGAAGC TCGGAGTCAA GGCTCGCGGC TGCAACGGCT TATCCTACAC CCTCAATTAC GCAGGTCTCT CACTCTTTCT
GTTAATCTAT TCTGGAAATA TCGTATATCT TGTAGATTTC TGGAACATTT TTTCTCTAAT AATTTAGCTG AATTCAATTT
GATTATTAGT TTTTCGTCCT GGAATCCCTA CGGTTTAATC AAAGGAGAAA GGTTGATCCT AAATGATTTA GCTTAGGCTC
GTTAAATTAC CTTTCTTACG CATAGGATTA TCCATTCGGT TTTTTAATCT TTGAAAGGAG TGTTCGACGA TTTGCTTTTC
CAGGAATTTT GCATCGGTGC TTGTGAATGA CCGATTTTTG TCGATTTTTA TGCCATGCTC CTATGTTTAT CGTCTTTGAG
ATTGCGTCTC ATCATAATCT GGATAGATTT ACTGTGTTTT TTCGTTGGAT GTTTTGTGTC TTTGGTTTCA TATACATACC
CCGTTTACGC ACACTAGCGT GAAAATGCTT AATTCATTGT CTTCAGAAAT AAGAGTTATT ATGGACGATT AAAATGAGTA
AGTAAAATTT GAAGTCACGT CTAAGATGAT GAAATAAGTC ATACCTTAAG GAAGTGACCA ACTACGTAAG TACTAAGACA
ATGAATGTAA GTGATGGCAA CAGTCAACAA GAAGGACTTT TATCCATTGG GTGAAGTTTG CTGCATGCAT CATTCAGCAC
CATGGAGCTC TATTGAAAAT TTAAACGTTT TTACCTTGTC TTTGTTCACC TCTAAAAACT ATGTTAACTC GTCTCTTATG
AAACTTATAT TTCATTGTCA TACTGTTACA CAACTCAAGT TTAGAAGATA TATCCCCCCC CTCCCGGTGA TTAATTGACT
CCTAATAACC ATTAGTCAAA CACATGCATT GCGGTATGTC AAATACTAAG GTAAATAAGC AAAATTGACC TTTGGTGGTA
ATATATTCTC ATATAAATCT CAAGTCCTAA ATGAGTAACA TGGATAAAAG TTTAATACTA TTGGGAATTT TCTATTTTTG
TTTACTGATT ATCTCTTTCA ATTGTGGTGA GCTGGAGATG GATGCATTAT TGCACTGAGT TATGACTTTT TAAATTAAGT
TTCCTGTTGT TTTTGACAGA TGAAAAAGGA AGGTTTGATG AGTTGGTTGA GGATAAGGGT GTTAAGATAT TGATTGATCC
AAAGGCCCTT ATGCATGTCA TTGGAACTAA AATGGATTTT GTAGATGACA AACTGAGGTA AATATTTTCC CTGACACTTT
TTCTTCATGC TCAACTTGTA CTTTTCTTCT GTTTTTGCTA TGTTTTGTTT GTTGTATTGT GATTTGAGAA TGGGATGATA
ACTCTATCTA TAAGAGGTAA TCATATTTTG GCTGGGACTT GGGACTCAGA TATGTTAAGT TTTACACTGC TCCATCTACA
TTAAAATCAG TTGTTGATTG CTTATCCCTT TTTCTGTTGG TTTCTTTTTA GATGTAGAAA TTCATCCTCT ACCAATTATC
AGTTTCCATG GGAACTGTCT GAAATTGGGA AGTTTCATAT TTTTAATAAT TCATTGTTTG TTACTCTTGT TAATTGAATC
CGCTGTGCCA ATTTTCTGGA TGTAAAACTG AATATTTTAG GGATAGGTCT CATTCAAAGT TGATATTGAG GATTTCTGTC
TATTCTGGTT CTGGCGGTTA AAATTGGACT CATTATGACA TAATAGCACA TGAAAGAAAG TAGATCAGAT GTTTGAGCTT
GTTATTCACT TACTTTTAAT TGAATACTTC CGGATATATG TGTGTTCTAA TTGATCTTAA TTATTCATCT GTATCATTAA
CTAATATAGT AGACCACGAA CTACAAACTG TGTCCAAGTA GGTAGATTTG AAATCTTATT TCTTAGTACT CAACACAGAT
GATGTAATTC GATCATCAAA TAATCATACT TGATTACTTC CGAAACATAT ATAGAATCAT TTTTAAGGGA ATTTAGTTTA
TAAAGTATAT CCATGTTAGT AATGAGGTTT GCGTGAATGT TTTGGTAACT GTTTTCTGTT ATTCTTTAGG AGAACCACGT
AATTAGTCTA TTGTGGACGA ATCTAGTCAA ACTGTCATGG TGGCATCGAC TTCACTTTAA ACCATACCCA AATCTGTTAA
GTGTCTACAA AAGTTACATT CGGGCTCTTC CACCTTGAAA AGATAAAAAG AAACACAGTA TTAAAACAAG TAATGCGTGT
GTTCCACTAC TGTAACAGAA TTTAATGCTT GTTAATTTTT TAGTATTAAA ACTTGTAGTC TAGTGGTGTC TGTGGGATGA
ATTTAATGAC TTCTAATTTA TTTTATCTCC TTTCTTTATC CAACCATGTT GGCCTGTGAT TAAATAAAAC AAATAAGAAT
AAGCATTTCA TCCCTGTTAA TTAATTGAGA TTACCTCAAG AAATGTGCAC CTTACCATTA TTGGCTAGTT CACTGAATTC
TTTATACAAT AAAACAGTTA AGAGCATAAC TAAAACTTGC AATGTGTAAA GTACAGGACT TATGACATGC AGAAGTCTGT
TTGTTTCATA GATGAGATAC GCTAAATCAG TAATTTACAG AGTTATTCAA TAGAGACACA TAATCAGTCG TGCAGAAACT
GTTACTGAAA AACTAATATA TTCAAAGCTT ATGACAGATA TTGGTAAACA CATACATTGC ATTGTATGAA ATCGTCCCAT
CACAAAACTT TCTTCTTATT GGAAACCAGC TAATTATACA GTTTAAGTCA CAGGCAAATA TGTTCTTACT GCAAGCATAA
CATATTTGAT GTAAGAGTTG AATCCAGACA TAATGTCATT ATTATGATTT CTAAATACTG AATATGTGTG TGTAGAGAGA
CAGAATTGAA ACCCAAATGC ATTAATATAT TAAGCTTTAG AAGACATTAA TTTGATTAGA TTCTCTTCAA CGGAATGTAG
CTTACGTTTT ATCTTCATTT AGGAATTACA TGTTTGGGCA TTGATCTGCT TGTGACAGAA GCTATATACC ACCTCTGTTA
CTCTTACTGT GCGTTAATTC GAGCTTTTGG AGTAGTCAAT TATTTCCTGT GCATTGTGTT ATGCTTACCT CTGGTAATGA
ATAGTGTTTT TTCTATCTCA AATATATGTA GAAAAATGTC TGCATCACTA AGGACGGTGT TAATGAAAGG GCATGAAAAT
TATTGTACAG TTTTTGTGTT CGTTTTTGTT GTTGGTTCAT CTGTTTTCTT CCTTTCTTTT TTTCCTAATG TGAACTACTG
CCTTGTTATT TTTGCTTTTA TTTTAACCAC TGCTCTTTTT TGCTTCTCCT GTCAGATCGG AATTTATTTT CGTCAATCCA
AATTCTAAAG GTCAGTGTGG TTGTGGTGAA TCTTTCATGA CAACAGGCAG TAGTGGCTCT TCTAAGTCAT GAAATGGTTA
AAATCGCTAT TAAACTTGCT GTGGATCCTC ACGTATAAAG TAGTCCTGTC ACGAATAGAT AGACATACAA GTACAACTAA
TGGATTTCTA CAATTCTGCC TGTTTCAACT AGGAAAACGA GAGCTTTAGG TGTTCAGAAC TAAAGGATAC TGAGACTGAC
GTGGTCTCAG TATACGAGTT CTCTGGAGCT GATGCTAATA AGGCCTATCA TTTGTTCGGA TGATTCTTAT TCATCATGTA
ATTCTTTATA TCATGAAAAT TGTAGTTTGT AGTTTAACAA TATCTTGGAA ATAATTTAAG TTTAAAATAT CATTCAACGC
ATTCAGAACT GAAGAAACTT TTCTTAGAAT TCTTTGGTCA GCTTATATAT CACGCTTTCA CTTGAATTAT TACGAATTAT
CATTTCTGGT TGAATGGCAT GGCCTTAAGC TACACAAGCT GGGACCTAGG CAAAGAAACT GCATTGAGTT TTTGTATTTC
ACATTTTTAT TATGTTTGTA TTTCACAATT GACCTGACTA TAATGGCAC

>Vigan.04G345400.01
ATTGTTTGAG CTCTGATAAA ATTACTGGGG AGGTGACAGA CAGATATAAT TAGGCCACAC AAGCACAGAG CATAGGTTTC
ATCGGGAACG TTCTACGAAT AGCCTAGCAT AGCCACAAAC GTGGTGGCCA CGCGCCAAAC CTGAAAAAGA GAGGAACCGT
CCTAAAACAA CAGGACACGG ATAGTTAATC TTCGATGGCT TCGAAGGCGA TGAGCGTGGC AGCGGTGAAG ATAGGGACGG
CGGCGCGCCG CCAAGCCGTG TCGTTGACGG ATGCCGCAGC CTCGCGTATA CGGCAGCTGC TACAGCAGCG TCAGAGGCCC
TTCTTGAAGC TCGGAGTCAA GGCTCGCGGC TGCAACGGCT TATCCTACAC CCTCAATTAC GCAGATGAAA AAGGAAGGTT
TGATGAGTTG GTTGAGGATA AGGGTGTTAA GATATTGATT GATCCAAAGG CCCTTATGCA TGTCATTGGA ACTAAAATGG
ATTTTGTAGA TGACAAACTG AGATCGGAAT TTATTTTCGT CAATCCAAAT TCTAAAGGTC AGTGTGGTTG TGGTGAATCT
TTCATGACAA CAGGCAGTAG TGGCTCTTCT AAGTCATGAA ATGGTTAAAA TCGCTATTAA ACTTGCTGTG GATCCTCACG
TATAAAGTAG TCCTGTCACG AATAGATAGA CATACAAGTA CAACTAATGG ATTTCTACAA TTCTGCCTGT TTCAACTAGG
AAAACGAGAG CTTTAGGTGT TCAGAACTAA AGGATACTGA GACTGACGTG GTCTCAGTAT ACGAGTTCTC TGGAGCTGAT
GCTAATAAGG CCTATCATTT GTTCGGATGA TTCTTATTCA TCATGTAATT CTTTATATCA TGAAAATTGT AGTTTGTAGT
TTAACAATAT CTTGGAAATA ATTTAAGTTT AAAATATCAT TCAACGCATT CAGAACTGAA GAAACTTTTC TTAGAATTCT
TTGGTCAGCT TATATATCAC GCTTTCACTT GAATTATTAC GAATTATCAT TTCTGGTTGA ATGGCATGGC CTTAAGCTAC
ACAAGCTGGG ACCTAGGCAA AGAAACTGCA TTGAGTTTTT GTATTTCACA TTTTTATTAT GTTTGTATTT CACAATTGAC
CTGACTATAA TGGCAC

>Vigan.04G345400.01
ATGGCTTCGA AGGCGATGAG CGTGGCAGCG GTGAAGATAG GGACGGCGGC GCGCCGCCAA GCCGTGTCGT TGACGGATGC
CGCAGCCTCG CGTATACGGC AGCTGCTACA GCAGCGTCAG AGGCCCTTCT TGAAGCTCGG AGTCAAGGCT CGCGGCTGCA
ACGGCTTATC CTACACCCTC AATTACGCAG ATGAAAAAGG AAGGTTTGAT GAGTTGGTTG AGGATAAGGG TGTTAAGATA
TTGATTGATC CAAAGGCCCT TATGCATGTC ATTGGAACTA AAATGGATTT TGTAGATGAC AAACTGAGAT CGGAATTTAT
TTTCGTCAAT CCAAATTCTA AAGGTCAGTG TGGTTGTGGT GAATCTTTCA TGACAACAGG CAGTAGTGGC TCTTCTAAGT
CATGA

>Vigan.04G345400.01
MASKAMSVAA VKIGTAARRQ AVSLTDAAAS RIRQLLQQRQ RPFLKLGVKA RGCNGLSYTL NYADEKGRFD ELVEDKGVKI
LIDPKALMHV IGTKMDFVDD KLRSEFIFVN PNSKGQCGCG ESFMTTGSSG SSKS*