GBrowse Details

Vigan.04G346000.01

Basic Information:
Name: Vigan.04G346000.01
Multiple alignment
Variant Information
Position: Chr04:46822833..46830722 (- strand)
Length: 7890
Functional Information:
Description: Similar to cytosolic iron-sulfur protein assembly protein CIAO1 homolog. [V7D053, Phaseolus vulgaris]
GO: Biological Process: iron-sulfur cluster assembly (GO:0016226)
Cellular Component: CIA complex (GO:0097361)
Molecular Function: protein binding (GO:0005515)
InterPro: WD40 repeat (IPR001680)
WD40/YVTN repeat-like-containing domain (IPR015943)
WD40-repeat-containing domain (IPR017986)
WD40 repeat, conserved site (IPR019775)
G-protein beta WD-40 repeat (IPR020472)
Probable cytosolic iron-sulfur protein assembly protein, CIAO1/Cia1 (IPR028608)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.22,5.37,9.64,18.28,15.91,15.71,11.97,11.79
Arabidopsis thaliana homolog: AT2G26060.1
Automatic updates:
Name: NM_001255251 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytosolic iron-sulfur protein assembly 1-like protein (LOC100778826), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:46822833..46824858 (- strand)
Length: 2026
Type: three_prime_UTR
Position: Chr04:46824859..46824924 (- strand)
Length: 66
Type: CDS
Position: Chr04:46825594..46825677 (- strand)
Length: 84
Type: CDS
Position: Chr04:46827007..46827076 (- strand)
Length: 70
Type: CDS
Position: Chr04:46827563..46827625 (- strand)
Length: 63
Type: CDS
Position: Chr04:46829023..46829094 (- strand)
Length: 72
Type: CDS
Position: Chr04:46829187..46829252 (- strand)
Length: 66
Type: CDS
Position: Chr04:46829434..46829498 (- strand)
Length: 65
Type: CDS
Position: Chr04:46829630..46829848 (- strand)
Length: 219
Type: CDS
Position: Chr04:46829948..46830094 (- strand)
Length: 147
Type: CDS
Position: Chr04:46830217..46830390 (- strand)
Length: 174
Type: CDS
Position: Chr04:46830391..46830722 (- strand)
Length: 332
Type: five_prime_UTR


>Vigan.04G346000.01
ATTACAAAGC ACTTTTTTTC TGTATGATTC ATAGGAATTG TATATTCGAA GTCTAAAACC ACGGTATAAT TTTGATACGG
TACCCATGGA TTACCCAAAA ACGGTGCATC AGTAGGTAGC TAGTTTTCCC GTGCGCTCAC CCCGTGGTGA ATTTGCGGCG
GCCCAATTGG TGATTTGTTT TTGTCTGTTT GTTAAAATCA TTTTCACTAA TTTTCTCTGA CGCGTGGCGT GGAGAAGAGT
GAGAAAGTAG GAAATAGCAG AGTAGAAAGT TGAGAATCAA GAAACGGGTC AGTGTTTACG GTGTATGCTG AGAGTGAAGG
CGATTGGTGA CGATGGAGTT GAAAGAGATT CAGAGACTCG AAGGTCACAC CGATAAGGTT TGGAGCTTGG ATTGGAACCC
CGCCACTGGA CACGCCGGTA TTCCGCTCGT CTTTGCTTCT TGCAGCGGCG ACAAAACCGT CCGAATCTGG GAGCAGAACC
TCTCCTCTGG TCTATGGGCT TGCAAGGCGG TTTTGGAAGA AACACACACT CGAACTGTTC GATCTTGTGC TTGGTCACCG
TCGGGGAAGC TTTTGGCCAC TGGAAGTTTC GACGCCACCA CTGCCATTTG GGAAAATGTT GGTGGCGATT TTGAGTGTGT
TTCTACTTTG GAGGGACATG AAAATGAAGT GAAGAGTGTG TGTTGGAATG CGTCTGGCAC GTTGCTTGCG ACTTGTAGTA
GAGATAAGTC TGTTTGGATA TGGGAAGTTC TGCCCGGGAA TGAGTTTGAG TGCGTGTCTG TGCTGCAAGG ACATGCGCAG
GATGTGAAAA TGGTGAAGTG GCATCCCACA GAGGATATCT TATTTTCGTG TAGTTATGAT AATAATATTA AGGTTTGGGC
GGATGAAGGT GATAGTGACG ATTGGCAATG CGTCCAAACC CTTGGGGTGC CTAATAACGG ACATACTTCC ACTGTCTGGG
CTCTCTCCTT CAATGCGAGT GGTGACAGAA TGGTTTCGTG TAGCGATGAT CTTACCGTGA AGGTCTGGGG AACAGAAAAC
ACAGAGATTC AATCTGGTGG TGGGTTTGCA CCCTGGAGAC ATCTTTGCAC TCTTACAGGG TATCATGATC GGACAATTTT
CTCAGTTCAT TGGTCAAGAG AAGGTATCTT TGCCAGTGGA GCCGCTGATG ATGCTATACG CCTTTTTGTG GATGACAATG
AAAGTCAGGT TGGTGGTCCT CTCTACAAGT TGCTGCTAAA GAAAGAGAAG GCCCATGACA TGGATGTAAA TTTTGTGCAG
TGGAGCCCTG GGGAGAAGCC GCTGCTAGCC TCTGCAAGCG ATGATGGGAC AATCAAGGTG TGGGAGTTGA TATCATAATG
ATGATGATAG TTTTTTCTCA TTTGCTGTAT GAGTAGCACA AAAAATTTAC ATTGGTGCCA ATAGAAGTGC TAGATGTCCA
GGCACCCTCA TAGTTCTTTT TCTATTATCA TAAGTTATAT TTACTACAAA TTTGAAACAG ATATTGATTA TTGTATTTTT
TAGGGAAGTC AGGAGTGTGA CTGTAAATTG TAATTACTGT CAACTAAACT TTACATTTTT GCTTAAGAGT TGCTAAAATT
TTCTTACTCT AGGGTGAACT GGGATCGTAA ATATGCTTTA CTTTCGTTAG TTATAACGAT AGAGTGAAAA GTAAGGATAC
TCACTAATAA CGGTGTGGCA ACTTGATGTT CGAATTGATT TCCATGCCTA CAATTTCTTG ACGGGTCACA AAGCTACATT
TGAGTTTTCA CTAAATTTTG TTAGCCGTAA ATTTCACATT TTCACTAGTA TGCCCCCGGT AAGTCATTTG TAAAGGCCAA
CAATGTATAC TGCACAGGAA GGACTAGTGT ATAAAAAAAT TAGCATCATA AATATCGAGA TATACACTAC AGAGTTAGAT
GACATGAGGG TCCAAATGCA AATTATTCCT TCACTTTTTT TGTAGATAGA ACTGTTATAT TAATTGTGAT GAGTACTGGA
ACATTTGACA TTTGACCATA CAATTTGAAA GAGTTTTGAT GAATCGTGAC TAAACAGATG CACTTCTGTT TTAGTAAATA
AAATTTCTTC TATCCAAATT GGGTTCGTTT AAATCGTTGG CATTTGTTGC AATAAAATAT GCTTGAGTTA GAAACGATGC
ATCTTTTAAC TCCAATGCAC TAAACTTTTT AAAACACAAG CGTAATTATT TCTCGAAGGC TGAAAGTTAT GTACATTACA
CATTGGAAGC TTCAACTCAG GCACTTAAGG GTCAAGGTTT GTTCAGAGCG AGAGACCATT TGGGAAATTG CTTGAACTAA
TGACTTGTTT TTTCTCGAAA GAAAGACAAG TGCTGAAACC GAAAACACAG TCACAATGAA TAAAATATAA GAACTTGACA
GTTTACAAAT TTTAACTTCC GAAATGTTGG TTGAGTTTTT CACATGTATC ATAAAAATCC CCGAAAACGT AATTGTCATA
AAGAAAAAAC AAATCGGATT ATATAAAAGA TTATATGATT ACTAAACAAT CCGTGATGAA TATGTGGTTG TCGTTAAAGT
GAATCACAGA AACGAAAAAT CTAACACCTG TTCTCTATTC TTAGTCCTGC AGCATTTGCT CTTGTACACT CTTCAACCAA
AGCCTCTCGC GCAGTGGAGA TTCTGCTCGG AACCAAAGGG GCATCAAATG CTGTGCAATC TATCCAATCC TTCAATAGCT
CCTCCTGACC CCACATATCA GGAATCCAAA CCCTCCCAGC CACTTCAACT CTATGCCGCT TCAGCCTCTC GCGTCCACTA
TCCTCTTCTA AACCCTCTGT TACACTACTT TCCTTAGCAG CCTCCTGCAA TGCCATTTTC TCCTCCTCGC AAAGAAGGGA
TTTTGAAGCA GACGGGTCTT CCTCTGTAAC ACCCTTATCT CTATCAATAC CATCACGGTT AATTTTGCTC AGGGAGAATA
AGGGGTCTTG CTGTTGCTGT TGCTCCTCCA TGTTGATGAT ATCTTTACTT GGATGGGGAG TGTTAAGGTC CAATGACTTT
GAAGGAATCT GGTCATGAGA TTCAGCAGAG GATCGGTGAG CCATGAAGGG TTGGCTGTTA TCTTTTCATG CAGAGAGAGA
GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GTTTGAATTG TGTAGAAGAG
ATTTGAAATT GGAGAAGGTT GTGTGGGGAA TAAAGCAAAG GGAGTGGGTG GGAAATTAGA TTACACGTCG CCCACAGAGT
TTCTTTTGTA TGGTAAGTGA CAAACGTACG TGTCTTGTTT GAGATGGGAT TCTATTTGTG TGGTGTTTCA ATTCCCACTC
CCCTCACTGT TAATAAGTAT GCCA

>Vigan.04G346000.01
ATGGAGTTGA AAGAGATTCA GAGACTCGAA GGTCACACCG ATAAGGTTTG GAGCTTGGAT TGGAACCCCG CCACTGGACA
CGCCGGTATT CCGCTCGTCT TTGCTTCTTG CAGCGGCGAC AAAACCGTCC GAATCTGGGA GCAGAACCTC TCCTCTGGTC
TATGGGCTTG CAAGGCGGTT TTGGAAGAAA CACACACTCG AACTGTTCGA TCTTGTGCTT GGTCACCGTC GGGGAAGCTT
TTGGCCACTG GAAGTTTCGA CGCCACCACT GCCATTTGGG AAAATGTTGG TGGCGATTTT GAGTGTGTTT CTACTTTGGA
GGGACATGAA AATGAAGTGA AGAGTGTGTG TTGGAATGCG TCTGGCACGT TGCTTGCGAC TTGTAGTAGA GATAAGTCTG
TTTGGATATG GGAAGTTCTG CCCGGGAATG AGTTTGAGTG CGTGTCTGTG CTGCAAGGAC ATGCGCAGGA TGTGAAAATG
GTGAAGTGGC ATCCCACAGA GGATATCTTA TTTTCGTGTA GTTATGATAA TAATATTAAG GTTTGGGCGG ATGAAGGTGA
TAGTGACGAT TGGCAATGCG TCCAAACCCT TGGGGTGCCT AATAACGGAC ATACTTCCAC TGTCTGGGCT CTCTCCTTCA
ATGCGAGTGG TGACAGAATG GTTTCGTGTA GCGATGATCT TACCGTGAAG GTCTGGGGAA CAGAAAACAC AGAGATTCAA
TCTGGTGGTG GGTTTGCACC CTGGAGACAT CTTTGCACTC TTACAGGGTA TCATGATCGG ACAATTTTCT CAGTTCATTG
GTCAAGAGAA GGTATCTTTG CCAGTGGAGC CGCTGATGAT GCTATACGCC TTTTTGTGGA TGACAATGAA AGTCAGGTTG
GTGGTCCTCT CTACAAGTTG CTGCTAAAGA AAGAGAAGGC CCATGACATG GATGTAAATT TTGTGCAGTG GAGCCCTGGG
GAGAAGCCGC TGCTAGCCTC TGCAAGCGAT GATGGGACAA TCAAGGTGTG GGAGTTGATA TCATAA

>Vigan.04G346000.01
MELKEIQRLE GHTDKVWSLD WNPATGHAGI PLVFASCSGD KTVRIWEQNL SSGLWACKAV LEETHTRTVR SCAWSPSGKL
LATGSFDATT AIWENVGGDF ECVSTLEGHE NEVKSVCWNA SGTLLATCSR DKSVWIWEVL PGNEFECVSV LQGHAQDVKM
VKWHPTEDIL FSCSYDNNIK VWADEGDSDD WQCVQTLGVP NNGHTSTVWA LSFNASGDRM VSCSDDLTVK VWGTENTEIQ
SGGGFAPWRH LCTLTGYHDR TIFSVHWSRE GIFASGAADD AIRLFVDDNE SQVGGPLYKL LLKKEKAHDM DVNFVQWSPG
EKPLLASASD DGTIKVWELI S*