GBrowse Details

Vigan.04G346900.01

Basic Information:
Name: Vigan.04G346900.01
Multiple alignment
Variant Information
Position: Chr04:46897807..46901682 (+ strand)
Length: 3876
Functional Information:
Description: Similar to Uncharacterized protein. [I1NAP1, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: F-box domain (IPR001810)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:40.65,32.60,9.52,10.38,11.35,7.41,13.55,9.56
Arabidopsis thaliana homolog: AT1G57790.1
Automatic updates:
Name: NM_001254283 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max F-box/kelch-repeat protein At1g57790-like (LOC100809651), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001289289 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max F-box family protein (LOC100796538), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:46897807..46897927 (+ strand)
Length: 121
Type: five_prime_UTR
Position: Chr04:46897928..46897959 (+ strand)
Length: 32
Type: CDS
Position: Chr04:46898898..46899996 (+ strand)
Length: 1099
Type: CDS
Position: Chr04:46899997..46901682 (+ strand)
Length: 1686
Type: three_prime_UTR


>Vigan.04G346900.01
TTTTTTGTGC AGTTGTGAAG TGTAGCAAGC AACTTCATCC TTTCTTTCTC TCTCTGGAAC GCAAAATCCT CTCTTTCTCT
CTCTCCAAAA CGCAACTTCG GTAGCCAATT GTCTGCGGAA AATGTCGGGG AAGAGAAAGA GGAAGTTGAA ATTGCTAAGC
GACACAATCA CAGACAATAG AAGGTCAGTT GATGAGATGA AAAGTGAACA TTTGGAGCTG CAATCCTGGG CTGATCTCCC
TGCTGAACTC TTAGAACTAA TCTTGTCCCG ATTGATCCTT GCTGATAATA TCCGTGCTTC TGCTGTTTGC AAGAGATGGC
ATTCTGTTGC TAGTGATGTC CGTGTAGTAA GCCAATCACC ATGGCTTATG TATTTTCCAA AGTTTGGTGA CTGTTATGAA
TTCTATGATC CTGTGCAGCG TAAGACCTAC ACCCTTGAGT TGCCAGAGTT GAATGGATCC AGAGTTTGTT ATACAAAAGA
TGGTTGGTTG TTGCTATACC GGCCCCGAAC TCACCGAGTA TTCTTCTTCA ATCCCTTTAC TCGGGAGCTG ATAAAACTGC
CAAGATTTGA GATGACATAC CAGATTGTTG CCTTCTCTTG TGCCCCAACA TCACCTGACT GTGTTCTGTT TACTGTTAAG
CATGTTAGTC CTACTGTTGT GGCTATTAGC ACTTGTTATC CTGGGGCGAC AGAATGGACC ACTATTAATC ACCCAAATCG
CTTGCCCTTT GTCAGTAGCA TTTGGAATAA ACTTGTGTTT TGTAATGGGT TATTTTATTG TTTGAGCCTC ACAGGTTGGC
TTGGGGTGTT TGACCCGGTT GAATGTATTT GGAGTGTTCT AGCAGTACCT CCACCTAAAT GCCCAGAGAA TTTTTTTGCC
AAAAACTGGT GGAAGGGGAA ATTTATGACA GAGCACGGAG GAGATATATT AGTAATCTAT ACATGCTGTA GTGAGAACCC
CATTATTTTC AAGTTAGATC AGACATTAAT GAAATGGGAA GAGATGAGAA CTCTAGATGG AGTAACTCTT TTTGCTAGTT
TTTTGTCTTC TCATTCCAGG ACCGACCTCA TTGGAGTAAT GAGGAACAAT GTCTACTTCT CTAAAGTTCG TTTCTATGGG
AAGCGTTGCA TATCATTCTC TCTTGATGAC TATAGATACT ATCCCCGTAA ACAGTGTCAT GACTGGGGAG AACAAGATCC
TTTTGAGAAC ATCTGGATTG AACCACCAAA GGACTTTTCG GCTTGCATGT GAAGAATTTT AGTGAACCAA GTAAGCATTT
ACAAAGTCAG TATTGTGTAT AGAATGTTTT TCTACTTCAT TTTATAACCC AAGACTTTGA CTGTGTATAA CTGTTGGATC
TGTGCTTTTG TAGCTAGTAT AATGAGACAT TTATGGAGCA ACTAAATTTT GCTTACTAAT TTAATTTATG TATATTTAAA
ATTTTCCTTA GTGCTCTTAA TCTTCTTGAT TGTTTATCAA TGCTTTCCCG TAAAAGTTAA TCCTGGCTGC ATGCATTTTA
TCAGTGTTGA GTTATATGCA AATCTTAACT GGATTCCTGT GGTTACATCT CTTCTAATAG CATCTCCATT TTCAATTTTA
ACCACTAAGA TTTTACATTT TCTGTATCTT ATCCATTGAA TGGCTGTAAG CAAATTTGAA ATGTTTATGC TTTAGTATTA
TGTGCCATAT GGTATGATTA CAGTCAAATG TGATTGATCA TTGGCTATGG AAATGAGAAA GGATCAAAGT TACAGGTAAA
ACTGCAAAAC ATAATTGTAT GCCTGCATGT ATTTTAAGAG CACTTGTATA ATGTTGGAAT GGCAGAAGGA ACCAAGTCAA
GTAACATCTG TGCACACTGT ATACTAGATT TTATAATTCA TATTTTTTAC TGTTTCAATA ATGATTTTAC ATATTTCTTT
TATTGCATTC ACCTTCAAAT TTTGTGAAAC TTTTCTAAAA GTTGGGTAGT TAATATCGTC AAATTGTGAA TTTTGTATTG
CTTTGTTGCC TTCTCAGCTG GTTAGAGCCA CCGTATAATT AAATTTGACT GGCTTAGACA ACCTATTAGT AAGAGCACCA
ACTGGCATCC ATATTTTTCT TAATTCAGCT TGATGGTGGG ATTATACATC TGCATTTCTA AAAATGTTAA GAACCTTGTC
TAAGCAAGGG TCAGTGTGTG ATGAAGTGGT CTGTGATGGG AAATTCAGTT GTTGAAGGGT TCTGTAGCAA CTAGCAACCT
CATGATTGAT TTTCTTTCTT GGGTGCTTAA ACTGATTAGA CCAATCTGTT GTTTGATTGA TCAAATATAT CTTGTTTTCA
AATGAATATT AAAACTTTCT GTTTCAATAT TTTATTAGAT TATAGATTAC TCCTCTATAC CTTCTCATGT GTGGAGTTTT
AGCTCTCCCT CTTTTTCTTT ACTGTTTGTT CCTTCTGCTT GTGAGTGGTG GATCAACATT TCCTAACATG ATGTCTATGT
CTGTATGCAG CATTTTGATT CAACGTCAGT TCCCAATGCA GAACATGTGA ATATTCAGAA GCATGCCCTG TTTGCAGGGT
GCATGTAGGA GGCTAATGTA TGTGTAAAAC TGAAGTTACA TGTGAAGGAA GGACCTCTGT GAGAGGGAAA CAAAAGACTT
GCCTCCTTGG TTACCAGCTT TGCAGATCCT GGAACATCAA GATTTTTGGG CTCAGCACAG CAGAAGACGT AGTTTATGCT
AATCTAGTGA TTTATTAATT ATTATTTTGG GCATCAGTAG TTTATAATAT GTGAAGGAAT GGACATCTCT AAGAGGGAAG
CGAAAAAGAC GTGCCCCCTT TTGTTCATTT CGTATCTGTT GATCTTTGAC TATTATGAAT TTTTGCCCCC AACACAGCAG
TACTTATGCA GAAAATTAGT TTATATTAAT AATAAAGACA TTTTTTAGTT TTTGGCCA

>Vigan.04G346900.01
ATGTCGGGGA AGAGAAAGAG GAAGTTGAAA TTGCTAAGCG ACACAATCAC AGACAATAGA AGGTCAGTTG ATGAGATGAA
AAGTGAACAT TTGGAGCTGC AATCCTGGGC TGATCTCCCT GCTGAACTCT TAGAACTAAT CTTGTCCCGA TTGATCCTTG
CTGATAATAT CCGTGCTTCT GCTGTTTGCA AGAGATGGCA TTCTGTTGCT AGTGATGTCC GTGTAGTAAG CCAATCACCA
TGGCTTATGT ATTTTCCAAA GTTTGGTGAC TGTTATGAAT TCTATGATCC TGTGCAGCGT AAGACCTACA CCCTTGAGTT
GCCAGAGTTG AATGGATCCA GAGTTTGTTA TACAAAAGAT GGTTGGTTGT TGCTATACCG GCCCCGAACT CACCGAGTAT
TCTTCTTCAA TCCCTTTACT CGGGAGCTGA TAAAACTGCC AAGATTTGAG ATGACATACC AGATTGTTGC CTTCTCTTGT
GCCCCAACAT CACCTGACTG TGTTCTGTTT ACTGTTAAGC ATGTTAGTCC TACTGTTGTG GCTATTAGCA CTTGTTATCC
TGGGGCGACA GAATGGACCA CTATTAATCA CCCAAATCGC TTGCCCTTTG TCAGTAGCAT TTGGAATAAA CTTGTGTTTT
GTAATGGGTT ATTTTATTGT TTGAGCCTCA CAGGTTGGCT TGGGGTGTTT GACCCGGTTG AATGTATTTG GAGTGTTCTA
GCAGTACCTC CACCTAAATG CCCAGAGAAT TTTTTTGCCA AAAACTGGTG GAAGGGGAAA TTTATGACAG AGCACGGAGG
AGATATATTA GTAATCTATA CATGCTGTAG TGAGAACCCC ATTATTTTCA AGTTAGATCA GACATTAATG AAATGGGAAG
AGATGAGAAC TCTAGATGGA GTAACTCTTT TTGCTAGTTT TTTGTCTTCT CATTCCAGGA CCGACCTCAT TGGAGTAATG
AGGAACAATG TCTACTTCTC TAAAGTTCGT TTCTATGGGA AGCGTTGCAT ATCATTCTCT CTTGATGACT ATAGATACTA
TCCCCGTAAA CAGTGTCATG ACTGGGGAGA ACAAGATCCT TTTGAGAACA TCTGGATTGA ACCACCAAAG GACTTTTCGG
CTTGCATGTG A

>Vigan.04G346900.01
MSGKRKRKLK LLSDTITDNR RSVDEMKSEH LELQSWADLP AELLELILSR LILADNIRAS AVCKRWHSVA SDVRVVSQSP
WLMYFPKFGD CYEFYDPVQR KTYTLELPEL NGSRVCYTKD GWLLLYRPRT HRVFFFNPFT RELIKLPRFE MTYQIVAFSC
APTSPDCVLF TVKHVSPTVV AISTCYPGAT EWTTINHPNR LPFVSSIWNK LVFCNGLFYC LSLTGWLGVF DPVECIWSVL
AVPPPKCPEN FFAKNWWKGK FMTEHGGDIL VIYTCCSENP IIFKLDQTLM KWEEMRTLDG VTLFASFLSS HSRTDLIGVM
RNNVYFSKVR FYGKRCISFS LDDYRYYPRK QCHDWGEQDP FENIWIEPPK DFSACM*