GBrowse Details

Vigan.04G348700.01

Basic Information:
Name: Vigan.04G348700.01
Multiple alignment
Variant Information
Position: Chr04:47050486..47068552 (+ strand)
Length: 18067
Functional Information:
Description: Similar to Uncharacterized protein. [K7KG28, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Tetratricopeptide TPR1 (IPR001440)
Sel1-like (IPR006597)
Tetratricopeptide-like helical (IPR011990)
Tetratricopeptide repeat-containing domain (IPR013026)
Tetratricopeptide repeat (IPR019734)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:53.75,51.06,11.09,14.79,16.23,8.34,12.18,13.50
Arabidopsis thaliana homolog: AT3G11540.1
Automatic updates:
Name: NM_001280583 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY-like (SPY1), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47050486..47050976 (+ strand)
Length: 491
Type: five_prime_UTR
Position: Chr04:47050977..47051348 (+ strand)
Length: 372
Type: CDS
Position: Chr04:47052805..47052966 (+ strand)
Length: 162
Type: CDS
Position: Chr04:47053074..47053249 (+ strand)
Length: 176
Type: CDS
Position: Chr04:47053380..47053455 (+ strand)
Length: 76
Type: CDS
Position: Chr04:47054083..47054211 (+ strand)
Length: 129
Type: CDS
Position: Chr04:47054334..47054453 (+ strand)
Length: 120
Type: CDS
Position: Chr04:47054535..47054603 (+ strand)
Length: 69
Type: CDS
Position: Chr04:47054683..47054764 (+ strand)
Length: 82
Type: CDS
Position: Chr04:47055686..47055780 (+ strand)
Length: 95
Type: CDS
Position: Chr04:47056324..47056388 (+ strand)
Length: 65
Type: CDS
Position: Chr04:47057373..47057571 (+ strand)
Length: 199
Type: CDS
Position: Chr04:47060192..47060386 (+ strand)
Length: 195
Type: CDS
Position: Chr04:47061431..47061525 (+ strand)
Length: 95
Type: CDS
Position: Chr04:47061637..47061772 (+ strand)
Length: 136
Type: CDS
Position: Chr04:47061882..47062099 (+ strand)
Length: 218
Type: CDS
Position: Chr04:47064549..47064676 (+ strand)
Length: 128
Type: CDS
Position: Chr04:47067445..47067908 (+ strand)
Length: 464
Type: CDS
Position: Chr04:47067909..47068552 (+ strand)
Length: 644
Type: three_prime_UTR


>Vigan.04G348700.01
AAAAGGTTGA AAGTATATTT ATAGAAAGAG CTCCCAACTT GGCTTGTTAG AGGCACAGAG AGTTACTTTG TATACTGAGT
TGCCGACTTT GACTACCTCT CTCTCCAACT GATTAAGTTT TTCATTACAC TAAAGCGTGA TGAAGAACCT CATCTCACGC
TTTACTCTTA GTTTTACTCT TTTGAATAAA TAACACTCCC TACTACGCTG TTTCTATTCA GTCTGCTCCC TCACACGAAC
TCGCAAAACC CTAATCGCTT CCTCGAAACC TTCGCTTCTT CAATCATCTC GGTTTTGGCT CCCTCCGTTG CCACCTCCGG
ACAGTTCCGC CGCTTCTTTC TTCGCTAGGG TTCGTCCTTT CACCTTCAGC TGCGATCGAT TTTGTGTTGA TGAATTCTGA
CTATTTTTCT ATAGACTCAC AATGGTGATT GTGCAATTTG TTGACGCAGT CGCTGCAATT TCGAATTCCG TTACTTGTTT
TGTTTCTGCA GATGGCAGGG GCGGAGAATA GCGACGGGAG CGGGAGTGAA CGAGAATTAG CGGGAAATGG TAACAACGGG
TTTTTGGAGT GTAGTGGTTC TGCTGGTAGT GAAGGGAACG ACAGCGTTTC TTATGCGAAC GTCTTGCGTT CGAGGAACAA
GTTTGCTGAC GCTCTTGCTA TCTACGAGCG TGTCTTGGAG AGCGATGGTG CAAATGTGGA GGCGCTCATT GGGAAAGGGA
TATGCCTTCA GATGCAGAAT AAGGGAAGGC TTGCGTTTGA GAGTTTTTTT GAGGCTATCA AGCTGGATCC TCAAAATGCT
CGTGCTCTCA CACATTGCGG CATTTTGTAT AAGGACGATG GTCGCCTGGT GGAGGCTGCA GAGTCGTATC AGAAGGCTTT
ACGAGTGGAT CCTTCATACA GAGCAGCAGC TGAATGCCTT GCCATTGTGT TAACAGATAT TGGTACCAAC ACAAAGCTTG
CTGGAAACAC TCAGGAAGGA ATTAAAAAAT ATTTTGAAGC CCTCAAAGTA GATCCACATT ATGCTCCTGC ATACTACAAT
CTTGGTGTGG TCTATTCAGA AATGATGCAA TATGACATGG CCCTCACTTT CTATGAAAAA GCTGCAGCAG AGAGGCCAGT
TTATGCTGAA GCATATTGCA ATATGGGTGT GATTTATAAA AATCGTGGTG ACTTGGATTC AGCTATTTCT TGTTATGATA
GGTGTTTAAC TGTATCACCT AACTTTGAGA TTGCAAAGAA TAATATGGCT ATAGCTTTGA CAGATTTAGG AACGAAGGTT
AAATTGGAGG GGGACATCAA CCAAGGCGTG GCTTTGTATA AGAAAGCTTT GTATTACAAC TGGCATTATG CTGATGCCAT
GTATAATCTT GGGGTTGCTT ATGGTGAGAT GCTTAAGTTT GATATGGCCA TTGTATTCTA CGAACTTGCC TTTCACTTCA
ATCCACATTG CGCGGAAGCA TGTAACAATC TCGGTGTTAT ATATAAAGAT CGTGAAAACC TTGATAAAGC AGTAGAGTGC
TACCAGCTTG CTTTGTCAAT CAAACCTAAT TTTTCACAGT CGTTGAATAA TCTTGGTGTT GTATACACTG TCCAGGGTAA
AGTGGATGCT GCTGCAAGTA TGATTGAGAA AGCTATCATT GCAAATCCAA CATATGCAGA AGCATACAAT AACCTAGGAG
TTCTTTACAG GGATGCTGGC GATATAACTG GAGCAATTAA TGCTTACGAG CAATGTCTTA AGATTGACCC TGATTCTCGG
AATGCTGGTC AGAATCGCTT ACTTGCAATG AATTACATAG ATGAAGGAAT TGATGACACA CTTTTTGAGG TTCACAGGAA
CTGGGGTAGG CGATTCATGA GACTATATCC ACGTCACACA TCATGGGGTA ACTCAAAAGA TCCTGATCGG CCCCTTGTGA
TAGGCTATGT TTCGCCTGAT TATTTTACCC ATTCTGTATC GTATTTCATT GAAGCACCTC TTGTATATCA TGACTACTCC
AATTTCAAAG TGATTGTTTA TTCTGCAGTT GTCAAGGCAG ATGCAAAAAC CATTAGATTT AGAGAGAAAG TTACAAAGAA
GGGTGGTATC TGGAAAGATA TTTATGGAAT TGATGAAAAG AAGGTTGCCG ACATTGTTAG AGAAGATCAA GTTGATATTT
TGGTAGAACT TACAGGTCAT ACTGCAAACA ATAAATTGGG AATGATGGCA TGTCGGCCTG CACCGGTTCA GGTGACTTGG
ATTGGTTATC CCAATACAAC AGGATTGCCT ACAATTGATT ATAGAATCAC TGATTCTCTG GCAGACCCTC CTGAAACAAA
GCAGAAACAC ATCGAGGAGT TGGTTAGATT GCCAGAATGT TTCCTTTGTT ACACCCCTTC CCCTGAGGCT GGCCCTGTTT
CTGCAACTCC AGCACTTTCC AATGGCTTCA TCACATTTGG TAGTTTCAAC AATCTTGCTA AGATTACACC AAAGGTATTG
AAGGTTTGGG CGAGGATATT GTGTGCAATT CCAAATTCGC GCCTTGTGGT AAAATGCAAA CCATTTTGTT GTGATAGTGT
GCGGCAAAGA TTCCTTTCAA CACTAGAGCA GTTAGGCTTA GAGCCGCTAC GTGTTGATCT TTTGCCCCTT ATTCTGCTTA
ACCATGATCA TATGCATGCC TATTCTCTAA TGGACATCAG TTTGGATACA TTTCCATATG CTGGAACAAC AACAACTTGT
GAATCTTTAT ATATGGGAGT TCCATGTGTC ACTATGGCTG GTTCAGTACA CGCACACAAT GTTGGTGTTA GTCTTCTCAG
AAACGTTGGA ATGGAGCATT TGATTGCCAG AAATGAAGAT GAGTACGTTG AATTGGCTAA GAAGTTGGCT TCTGACATTT
CCTCACTACA TAATTTGAGA ATGAGTCTAC GAGATCTCAT GTCTAAGTCC CCTCTCTGTG ATGGTGCAAA ATTTACCTTA
GGTCTAGAGT CAACTTACAG AAATATGTGG CACAGGTATT GTAGAGGAGA TGTTCCATCT TTGAAACGCA TGGAATTGTT
AGAAGAAGTT GCTATGGGTG ACATGACAAA TAAAAATTCT GAGCAATCAA GAATTGCAAA CTCAAGGGAG GACAGTCCTG
GATCTGTCAA GGCCAATGGA TTTGATACAA TGCCCGTGTC AAAGCTTAAC ATAGACAGCT GCGAAGAAAA CGGTGGGTCA
TCAAATGGTG GCGGTAGTAA ACAAGGAAAA AGACAGGTTA ATGTTGAATT CCATCCGAGA ATCCTTTTGT AGTGATTCAA
GAATGTAGAA CTTGATTACA ATAGTTGTAC CATTATGATG TATAGTTGCT GTTGGAAGAA GCTGAAAGCA ATCATTGCAT
CGCATAAAGT TAACTTGCAT ATAGGGGGTG GGGGCTATAG AAAGTAAGTC ATAAAAGCCC CTTCGGTGCG GTGGATGTGC
AAAAGGGTGA AGCTACCTTG AGCTGCAGTC TGTAACACCT TTTTTGGTAG CCGATACCTG CTGGATATTC CTCCCCTTCA
TTTTATCAAT AGATTAGAGC GTGGCAATTT GTTTTTACTG CTTTTGAAAT TGGCATTTTT TTGTGGGCAC GCAATAGCTT
TATGGGGGAT TGCTTTTTGC ACTGCCATGG TTTTCTCCTA CACACTATGG GGTGTATGTA GAAGACAAAA ATGACCCTAA
GTAATCAAAA ACCTAATTCT ATTTCATCTT TTCTACAATT TCTCGTTGTT TGTCTCTCAC CAACTGTCGC TTCCACTTCC
CATCACATTG TCACCCTCAA TTGTTATCAT CACCGTTATT GTTGTTGCAG TTGTGATGAT GAAAGTGTAA AATTTATTTT
GTTTAGTTTT GTTTTTATCC GTTGTGCGTA TACTTTGAAT TTCTTGATTT GGAAAATTCA GATTGTAGAA TATGGT

>Vigan.04G348700.01
ATGGCAGGGG CGGAGAATAG CGACGGGAGC GGGAGTGAAC GAGAATTAGC GGGAAATGGT AACAACGGGT TTTTGGAGTG
TAGTGGTTCT GCTGGTAGTG AAGGGAACGA CAGCGTTTCT TATGCGAACG TCTTGCGTTC GAGGAACAAG TTTGCTGACG
CTCTTGCTAT CTACGAGCGT GTCTTGGAGA GCGATGGTGC AAATGTGGAG GCGCTCATTG GGAAAGGGAT ATGCCTTCAG
ATGCAGAATA AGGGAAGGCT TGCGTTTGAG AGTTTTTTTG AGGCTATCAA GCTGGATCCT CAAAATGCTC GTGCTCTCAC
ACATTGCGGC ATTTTGTATA AGGACGATGG TCGCCTGGTG GAGGCTGCAG AGTCGTATCA GAAGGCTTTA CGAGTGGATC
CTTCATACAG AGCAGCAGCT GAATGCCTTG CCATTGTGTT AACAGATATT GGTACCAACA CAAAGCTTGC TGGAAACACT
CAGGAAGGAA TTAAAAAATA TTTTGAAGCC CTCAAAGTAG ATCCACATTA TGCTCCTGCA TACTACAATC TTGGTGTGGT
CTATTCAGAA ATGATGCAAT ATGACATGGC CCTCACTTTC TATGAAAAAG CTGCAGCAGA GAGGCCAGTT TATGCTGAAG
CATATTGCAA TATGGGTGTG ATTTATAAAA ATCGTGGTGA CTTGGATTCA GCTATTTCTT GTTATGATAG GTGTTTAACT
GTATCACCTA ACTTTGAGAT TGCAAAGAAT AATATGGCTA TAGCTTTGAC AGATTTAGGA ACGAAGGTTA AATTGGAGGG
GGACATCAAC CAAGGCGTGG CTTTGTATAA GAAAGCTTTG TATTACAACT GGCATTATGC TGATGCCATG TATAATCTTG
GGGTTGCTTA TGGTGAGATG CTTAAGTTTG ATATGGCCAT TGTATTCTAC GAACTTGCCT TTCACTTCAA TCCACATTGC
GCGGAAGCAT GTAACAATCT CGGTGTTATA TATAAAGATC GTGAAAACCT TGATAAAGCA GTAGAGTGCT ACCAGCTTGC
TTTGTCAATC AAACCTAATT TTTCACAGTC GTTGAATAAT CTTGGTGTTG TATACACTGT CCAGGGTAAA GTGGATGCTG
CTGCAAGTAT GATTGAGAAA GCTATCATTG CAAATCCAAC ATATGCAGAA GCATACAATA ACCTAGGAGT TCTTTACAGG
GATGCTGGCG ATATAACTGG AGCAATTAAT GCTTACGAGC AATGTCTTAA GATTGACCCT GATTCTCGGA ATGCTGGTCA
GAATCGCTTA CTTGCAATGA ATTACATAGA TGAAGGAATT GATGACACAC TTTTTGAGGT TCACAGGAAC TGGGGTAGGC
GATTCATGAG ACTATATCCA CGTCACACAT CATGGGGTAA CTCAAAAGAT CCTGATCGGC CCCTTGTGAT AGGCTATGTT
TCGCCTGATT ATTTTACCCA TTCTGTATCG TATTTCATTG AAGCACCTCT TGTATATCAT GACTACTCCA ATTTCAAAGT
GATTGTTTAT TCTGCAGTTG TCAAGGCAGA TGCAAAAACC ATTAGATTTA GAGAGAAAGT TACAAAGAAG GGTGGTATCT
GGAAAGATAT TTATGGAATT GATGAAAAGA AGGTTGCCGA CATTGTTAGA GAAGATCAAG TTGATATTTT GGTAGAACTT
ACAGGTCATA CTGCAAACAA TAAATTGGGA ATGATGGCAT GTCGGCCTGC ACCGGTTCAG GTGACTTGGA TTGGTTATCC
CAATACAACA GGATTGCCTA CAATTGATTA TAGAATCACT GATTCTCTGG CAGACCCTCC TGAAACAAAG CAGAAACACA
TCGAGGAGTT GGTTAGATTG CCAGAATGTT TCCTTTGTTA CACCCCTTCC CCTGAGGCTG GCCCTGTTTC TGCAACTCCA
GCACTTTCCA ATGGCTTCAT CACATTTGGT AGTTTCAACA ATCTTGCTAA GATTACACCA AAGGTATTGA AGGTTTGGGC
GAGGATATTG TGTGCAATTC CAAATTCGCG CCTTGTGGTA AAATGCAAAC CATTTTGTTG TGATAGTGTG CGGCAAAGAT
TCCTTTCAAC ACTAGAGCAG TTAGGCTTAG AGCCGCTACG TGTTGATCTT TTGCCCCTTA TTCTGCTTAA CCATGATCAT
ATGCATGCCT ATTCTCTAAT GGACATCAGT TTGGATACAT TTCCATATGC TGGAACAACA ACAACTTGTG AATCTTTATA
TATGGGAGTT CCATGTGTCA CTATGGCTGG TTCAGTACAC GCACACAATG TTGGTGTTAG TCTTCTCAGA AACGTTGGAA
TGGAGCATTT GATTGCCAGA AATGAAGATG AGTACGTTGA ATTGGCTAAG AAGTTGGCTT CTGACATTTC CTCACTACAT
AATTTGAGAA TGAGTCTACG AGATCTCATG TCTAAGTCCC CTCTCTGTGA TGGTGCAAAA TTTACCTTAG GTCTAGAGTC
AACTTACAGA AATATGTGGC ACAGGTATTG TAGAGGAGAT GTTCCATCTT TGAAACGCAT GGAATTGTTA GAAGAAGTTG
CTATGGGTGA CATGACAAAT AAAAATTCTG AGCAATCAAG AATTGCAAAC TCAAGGGAGG ACAGTCCTGG ATCTGTCAAG
GCCAATGGAT TTGATACAAT GCCCGTGTCA AAGCTTAACA TAGACAGCTG CGAAGAAAAC GGTGGGTCAT CAAATGGTGG
CGGTAGTAAA CAAGGAAAAA GACAGGTTAA TGTTGAATTC CATCCGAGAA TCCTTTTGTA G

>Vigan.04G348700.01
MAGAENSDGS GSERELAGNG NNGFLECSGS AGSEGNDSVS YANVLRSRNK FADALAIYER VLESDGANVE ALIGKGICLQ
MQNKGRLAFE SFFEAIKLDP QNARALTHCG ILYKDDGRLV EAAESYQKAL RVDPSYRAAA ECLAIVLTDI GTNTKLAGNT
QEGIKKYFEA LKVDPHYAPA YYNLGVVYSE MMQYDMALTF YEKAAAERPV YAEAYCNMGV IYKNRGDLDS AISCYDRCLT
VSPNFEIAKN NMAIALTDLG TKVKLEGDIN QGVALYKKAL YYNWHYADAM YNLGVAYGEM LKFDMAIVFY ELAFHFNPHC
AEACNNLGVI YKDRENLDKA VECYQLALSI KPNFSQSLNN LGVVYTVQGK VDAAASMIEK AIIANPTYAE AYNNLGVLYR
DAGDITGAIN AYEQCLKIDP DSRNAGQNRL LAMNYIDEGI DDTLFEVHRN WGRRFMRLYP RHTSWGNSKD PDRPLVIGYV
SPDYFTHSVS YFIEAPLVYH DYSNFKVIVY SAVVKADAKT IRFREKVTKK GGIWKDIYGI DEKKVADIVR EDQVDILVEL
TGHTANNKLG MMACRPAPVQ VTWIGYPNTT GLPTIDYRIT DSLADPPETK QKHIEELVRL PECFLCYTPS PEAGPVSATP
ALSNGFITFG SFNNLAKITP KVLKVWARIL CAIPNSRLVV KCKPFCCDSV RQRFLSTLEQ LGLEPLRVDL LPLILLNHDH
MHAYSLMDIS LDTFPYAGTT TTCESLYMGV PCVTMAGSVH AHNVGVSLLR NVGMEHLIAR NEDEYVELAK KLASDISSLH
NLRMSLRDLM SKSPLCDGAK FTLGLESTYR NMWHRYCRGD VPSLKRMELL EEVAMGDMTN KNSEQSRIAN SREDSPGSVK
ANGFDTMPVS KLNIDSCEEN GGSSNGGGSK QGKRQVNVEF HPRILL*