GBrowse Details

Vigan.04G349300.01

Basic Information:
Name: Vigan.04G349300.01
Multiple alignment
Variant Information
Position: Chr04:47112077..47113593 (+ strand)
Length: 1517
Functional Information:
Description: Similar to Embryo defective 2735. [XP_007027864.1, Theobroma cacao]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.95,9.06,12.54,14.69,18.84,18.56,25.53,15.40
Arabidopsis thaliana homolog: AT5G06240.1
Automatic updates:
Name: NM_001248076 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527875 (LOC100527875), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47112077..47112165 (+ strand)
Length: 89
Type: five_prime_UTR
Position: Chr04:47112166..47112303 (+ strand)
Length: 138
Type: CDS
Position: Chr04:47112474..47112633 (+ strand)
Length: 160
Type: CDS
Position: Chr04:47113186..47113382 (+ strand)
Length: 197
Type: CDS
Position: Chr04:47113383..47113593 (+ strand)
Length: 211
Type: three_prime_UTR


>Vigan.04G349300.01
ATTTTTTGCT CTTTACAGTT ACAGTTGCAA TCACTCAGCT GGTTAATGGT TGCTACAACT CTAACTGTAT TCACAGTTTG
GAGGTTCAAA TGAAACTGAG GGTTGTCTGC AGAAAAATTT ACGACTACAT AAGGTATGAT CTCAAAGAAA TCGCTTTCCC
CTCTTCATTG CCGGATCCTC CTCACTTAAA AAAGCGTCGC AAATTGACCA GGGATGAGCG TATCTGGGTT TTGAAGAGAG
CTTCCAGGCT TTATGCCGCA AGCTGGGTTC GTGACATTGG TCCTGACCTT CGGCCAGACG ATTACAAGAA GGATGACATG
GCTAGTGAAA CAAATGATGA AAAGAGAACA GATAAAGGAA AAGAACCCTC AACACTTGAG GATCTCGCTG TAGCTGCTAG
AGGGGGAATG GAGACCCTCA GACCTGCTTT GCAGCGTGTG TACATGACCA GAGCATCTGC ATACAGAGAT GCTCTTAAAA
GTTTCATAGA AGGATACCAA GAGGGTGTTC AGCAAGTGAC GGAGAAGAAG GAAGATTCCA ATACGCAAGA AGATGCTGAT
CTACCCCCAA AAAAACCAAC TTGAACTTGC TTGTAGGAAG GGTGATGCTT CTTTTCTGGT AGACCCACCA GTAGTTTGGA
CTAAGGCATG AAGTTTGACA GAAATTAGTG CCAGTCCTCT TGATTAAAAG GTTTTAATGT ACATTTCACT AAACATAAAG
GGTCGAATAT TCCAAATGGG TGTATTTTGG ATACTATACA TCTATTAGTA GATCTGAATT TTGTTTTTGC AAATT

>Vigan.04G349300.01
ATGAAACTGA GGGTTGTCTG CAGAAAAATT TACGACTACA TAAGGTATGA TCTCAAAGAA ATCGCTTTCC CCTCTTCATT
GCCGGATCCT CCTCACTTAA AAAAGCGTCG CAAATTGACC AGGGATGAGC GTATCTGGGT TTTGAAGAGA GCTTCCAGGC
TTTATGCCGC AAGCTGGGTT CGTGACATTG GTCCTGACCT TCGGCCAGAC GATTACAAGA AGGATGACAT GGCTAGTGAA
ACAAATGATG AAAAGAGAAC AGATAAAGGA AAAGAACCCT CAACACTTGA GGATCTCGCT GTAGCTGCTA GAGGGGGAAT
GGAGACCCTC AGACCTGCTT TGCAGCGTGT GTACATGACC AGAGCATCTG CATACAGAGA TGCTCTTAAA AGTTTCATAG
AAGGATACCA AGAGGGTGTT CAGCAAGTGA CGGAGAAGAA GGAAGATTCC AATACGCAAG AAGATGCTGA TCTACCCCCA
AAAAAACCAA CTTGA

>Vigan.04G349300.01
MKLRVVCRKI YDYIRYDLKE IAFPSSLPDP PHLKKRRKLT RDERIWVLKR ASRLYAASWV RDIGPDLRPD DYKKDDMASE
TNDEKRTDKG KEPSTLEDLA VAARGGMETL RPALQRVYMT RASAYRDALK SFIEGYQEGV QQVTEKKEDS NTQEDADLPP
KKPT*