GBrowse Details

Vigan.04G350600.01

Basic Information:
Name: Vigan.04G350600.01
Multiple alignment
Variant Information
Position: Chr04:47191566..47195609 (- strand)
Length: 4044
Functional Information:
Description: Similar to Ubiquitin-conjugating enzyme E2 variant 1C. [Q9SJ44, Arabidopsis thaliana]
GO: Molecular Function: acid-amino acid ligase activity (GO:0016881)
InterPro: Ubiquitin-conjugating enzyme, E2 (IPR000608)
Ubiquitin-conjugating enzyme/RWD-like (IPR016135)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:41.36,23.27,52.85,46.02,47.43,60.54,50.96,35.22
Arabidopsis thaliana homolog: AT2G36060.2
Automatic updates:
Name: NM_001249004 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-protein ligase (LOC100306398), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254667 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ubiquitin-conjugating enzyme E2 variant 1C-like (LOC100789495), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47191566..47191925 (- strand)
Length: 360
Type: three_prime_UTR
Position: Chr04:47191926..47192066 (- strand)
Length: 141
Type: CDS
Position: Chr04:47193123..47193248 (- strand)
Length: 126
Type: CDS
Position: Chr04:47193916..47194055 (- strand)
Length: 140
Type: CDS
Position: Chr04:47195428..47195461 (- strand)
Length: 34
Type: CDS
Position: Chr04:47195462..47195609 (- strand)
Length: 148
Type: five_prime_UTR


>Vigan.04G350600.01
CCCTATTAGA CCAAATCGCT GTTGTAACCG TTTCTTTTTC TTTCTTCATT ATTATTCCGA AATTTGCCTT CGATTTTTTG
CTTACGCAGA TTCCCCTTTC CGTCAGACAT TTCCATACTT TGATCAGATC CACGACAATT GCTCATCCAT GACGCTTGGC
TCTGCGGGAT CCAGTGTCGT GGTTCCGAGG AACTTCAGAT TGCTGGAGGA ACTTGAAAAG GGAGAAAAAG GAATTGGAGA
TGGCACAGTT AGCTATGGAA TGGATGATGG TGATGATATT TACATGCGCT CTTGGACTGG CACCATTATT GGCCCCTATA
ATACTGTACA CGAAGGAAGA ATTTATCAAT TGAAGTTGTT TTGTGATAAA GATTACCCAG AAAAGCCTCC AACTGTTCGG
TTTCATTCAC GGATCAATAT GACTTGTGTT AATCATGAAA CTGGAGTGGT TGAATCAAAG AAATTTAGTC TTCTTGCAAA
TTGGCAACGA AGGTTTACCA TGGAAGATAT ATTGACCCAA TTGAAGAAGG AAATGGCAGC TTCACATAAC CGCAAGCTTA
TCCAGCCTCC TGAAGGTACT TGCTATTAGT GTCCAAGATC ATACCGGTAT TAGGTCATAT TGCACTTGCA GTGTGCAATT
TATAGTATCT AATACTCTGG ATCCTTCTAT GTTCAACAAC ATACAGGGAA TGTCCAAATG AGCTTAATCT TTATCTCCGT
AGCCTGAGTT GTTTTTGTTG CCTTACATTC ATACATTATT GACTATGTTG AACTCTCTTA TTGATGCTAA ATATTGAAAG
CAACTATTTA AGTAGTATTT TCTAATTAGT GCTTCCCATT TTGTTCTTGC TTTTCTTTAA TTCACTTGCT TTCTGGCTTT
AAATTTAGCG GGAAGCTACA CTAAAATTGT GACAAATGTT ATTTATTTGG GTGTATGCAT TGACTTCAG

>Vigan.04G350600.01
ATGACGCTTG GCTCTGCGGG ATCCAGTGTC GTGGTTCCGA GGAACTTCAG ATTGCTGGAG GAACTTGAAA AGGGAGAAAA
AGGAATTGGA GATGGCACAG TTAGCTATGG AATGGATGAT GGTGATGATA TTTACATGCG CTCTTGGACT GGCACCATTA
TTGGCCCCTA TAATACTGTA CACGAAGGAA GAATTTATCA ATTGAAGTTG TTTTGTGATA AAGATTACCC AGAAAAGCCT
CCAACTGTTC GGTTTCATTC ACGGATCAAT ATGACTTGTG TTAATCATGA AACTGGAGTG GTTGAATCAA AGAAATTTAG
TCTTCTTGCA AATTGGCAAC GAAGGTTTAC CATGGAAGAT ATATTGACCC AATTGAAGAA GGAAATGGCA GCTTCACATA
ACCGCAAGCT TATCCAGCCT CCTGAAGGTA CTTGCTATTA G

>Vigan.04G350600.01
MTLGSAGSSV VVPRNFRLLE ELEKGEKGIG DGTVSYGMDD GDDIYMRSWT GTIIGPYNTV HEGRIYQLKL FCDKDYPEKP
PTVRFHSRIN MTCVNHETGV VESKKFSLLA NWQRRFTMED ILTQLKKEMA ASHNRKLIQP PEGTCY*