GBrowse Details

Vigan.04G351000.01

Basic Information:
Name: Vigan.04G351000.01
Multiple alignment
Variant Information
Position: Chr04:47242289..47247875 (- strand)
Length: 5587
Functional Information:
Description: Similar to UPF0554 protein-like. [XP_004494235.1, Cicer arietinum]
InterPro: Protein of unknown function DUF2305 (IPR019363)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:39.66,15.25,7.06,10.94,7.63,9.81,3.42,7.43
Arabidopsis thaliana homolog: AT3G11620.2
Automatic updates:
Name: NM_001252831 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max UPF0554 protein-like (LOC100790552), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47242289..47242636 (- strand)
Length: 348
Type: three_prime_UTR
Position: Chr04:47242637..47242783 (- strand)
Length: 147
Type: CDS
Position: Chr04:47244057..47244161 (- strand)
Length: 105
Type: CDS
Position: Chr04:47244473..47244523 (- strand)
Length: 51
Type: CDS
Position: Chr04:47244742..47244889 (- strand)
Length: 148
Type: CDS
Position: Chr04:47245225..47245307 (- strand)
Length: 83
Type: CDS
Position: Chr04:47245416..47245475 (- strand)
Length: 60
Type: CDS
Position: Chr04:47246164..47246214 (- strand)
Length: 51
Type: CDS
Position: Chr04:47246806..47246856 (- strand)
Length: 51
Type: CDS
Position: Chr04:47246930..47246958 (- strand)
Length: 29
Type: CDS
Position: Chr04:47247055..47247126 (- strand)
Length: 72
Type: CDS
Position: Chr04:47247215..47247288 (- strand)
Length: 74
Type: CDS
Position: Chr04:47247365..47247472 (- strand)
Length: 108
Type: CDS
Position: Chr04:47247766..47247842 (- strand)
Length: 77
Type: CDS
Position: Chr04:47247843..47247875 (- strand)
Length: 33
Type: five_prime_UTR


>Vigan.04G351000.01
CTGTGTGTGT TGTAACTACC GCGTTTCAAG CAAATGTTTC CTGGCCTCGG GGGTTGGACT GCTCGATCTT TCGCTCACTC
TGTGCTGTTG CCTTCCCTCG CTTCCTCCAG GACAAGGTTT AGAGCCAAGT GTTTGGTTAA TTGCAGCATG ACGGTGAACG
ATAACTTGCT TTCCAAACCT ATAAGGCGTG CTAATTTTCG ATTATGCAAT GTTTCAGGTT ACATTTCTGA AGTATTGGAG
ATTCGGGCTG AGGCTCCTAA ACTGCATGTT CTGCTTGTTC CTGGAAACCC AGGTGTTGTT TTATTCTACA AGGACTTTGT
GGAATTTCTA TATGAGCTGC TGGAGGGAAC TGCGTCTGTG ACTGCTATCG GCCATGTTTC TCACTCAAGA AAGGACTTGG
AACATGGACG CATGTTTTCT TTACAAGAAC AAATTGATCA CAAGATTGAC TTCATCATAC AGGAGTTGCA AAATATTGAG
ATTCCTATAT TACTGGTTGG GCACTCTATT GGTTCATACA TATCTATTGA AATGTTCAAG AAGTCTCCAG AGAAGGTGAA
ATATTGTATT GGACTTTATC CATTTTTGAC GTTAAATCCG CAATCAACAA AACAGTTGTT AATTGGAAAA ATTGCAAAAT
CCCAAGTTCT AGCTGCTGCT CTTAGTTACC TGATAGCATC ATTAGGATGG CTACCTGTCC AAGCTTTAAG GTTCGTGGTC
AGAAAATCCC TTGGGAAGTC ATGGTCAGTC AATGCAGTTG ATGCTGCTTG CTCTCACTTG TCACAGTACC ATACTATGCG
GAATGTTCTG TATATGGCCA TGACAGAATT CAGAAAGCTT TCAGAGGCAC CAGATTGGAC ATTTATGAAA GAAAGGAAGG
CTCAATTGAC GTTTTTATTT GGTATCGACG ACCACTGGGG CCCACTTGAT TTGCTTGAAG AGATTTCAAA GCAGGTTCCC
GGTGTTGCCG TATCTATTGA ACGAGAAAAC CACACCCATG GTTTCTGTTG CACAGAGGCC GGCTCATTAT GGGTTGCTCA
GCATGTGGCA AACTGTATCA AGAAGCAGAC AGCTTGTACA AACCAATGAG GTCTGACTCT CTTGCTGTTC GCTTGTGTTG
TGTGAGTTTT CTATGTTAGT CTCAGAAAGG ACTGAACCAC AAATAAATTT GAAACGATGC TTATAGTGCA TGCTATAAAA
AGTGTAGTTT CTTTCATTCA TCAGTGCTGA TAGTGCATTC AACAGTTTTA ACATCGCCAA CAACTGTATT TTATGACTTA
GTAGTTCCAC CGTCCTCCAG TTGTACAAAG TAAACTATCG CCAACTGCAT TTTGAACCCT CCCTACCCCC TCTTTTCCAA
AAAATTTAGG ACACGTTTCT CAAAAACCTT AGTTTTTATC GTTTATCAAA TTGGTGTCAA GCATCAACTT CCAGAAA

>Vigan.04G351000.01
ATGTTTCCTG GCCTCGGGGG TTGGACTGCT CGATCTTTCG CTCACTCTGT GCTGTTGCCT TCCCTCGCTT CCTCCAGGAC
AAGGTTTAGA GCCAAGTGTT TGGTTAATTG CAGCATGACG GTGAACGATA ACTTGCTTTC CAAACCTATA AGGCGTGCTA
ATTTTCGATT ATGCAATGTT TCAGGTTACA TTTCTGAAGT ATTGGAGATT CGGGCTGAGG CTCCTAAACT GCATGTTCTG
CTTGTTCCTG GAAACCCAGG TGTTGTTTTA TTCTACAAGG ACTTTGTGGA ATTTCTATAT GAGCTGCTGG AGGGAACTGC
GTCTGTGACT GCTATCGGCC ATGTTTCTCA CTCAAGAAAG GACTTGGAAC ATGGACGCAT GTTTTCTTTA CAAGAACAAA
TTGATCACAA GATTGACTTC ATCATACAGG AGTTGCAAAA TATTGAGATT CCTATATTAC TGGTTGGGCA CTCTATTGGT
TCATACATAT CTATTGAAAT GTTCAAGAAG TCTCCAGAGA AGGTGAAATA TTGTATTGGA CTTTATCCAT TTTTGACGTT
AAATCCGCAA TCAACAAAAC AGTTGTTAAT TGGAAAAATT GCAAAATCCC AAGTTCTAGC TGCTGCTCTT AGTTACCTGA
TAGCATCATT AGGATGGCTA CCTGTCCAAG CTTTAAGGTT CGTGGTCAGA AAATCCCTTG GGAAGTCATG GTCAGTCAAT
GCAGTTGATG CTGCTTGCTC TCACTTGTCA CAGTACCATA CTATGCGGAA TGTTCTGTAT ATGGCCATGA CAGAATTCAG
AAAGCTTTCA GAGGCACCAG ATTGGACATT TATGAAAGAA AGGAAGGCTC AATTGACGTT TTTATTTGGT ATCGACGACC
ACTGGGGCCC ACTTGATTTG CTTGAAGAGA TTTCAAAGCA GGTTCCCGGT GTTGCCGTAT CTATTGAACG AGAAAACCAC
ACCCATGGTT TCTGTTGCAC AGAGGCCGGC TCATTATGGG TTGCTCAGCA TGTGGCAAAC TGTATCAAGA AGCAGACAGC
TTGTACAAAC CAATGA

>Vigan.04G351000.01
MFPGLGGWTA RSFAHSVLLP SLASSRTRFR AKCLVNCSMT VNDNLLSKPI RRANFRLCNV SGYISEVLEI RAEAPKLHVL
LVPGNPGVVL FYKDFVEFLY ELLEGTASVT AIGHVSHSRK DLEHGRMFSL QEQIDHKIDF IIQELQNIEI PILLVGHSIG
SYISIEMFKK SPEKVKYCIG LYPFLTLNPQ STKQLLIGKI AKSQVLAAAL SYLIASLGWL PVQALRFVVR KSLGKSWSVN
AVDAACSHLS QYHTMRNVLY MAMTEFRKLS EAPDWTFMKE RKAQLTFLFG IDDHWGPLDL LEEISKQVPG VAVSIERENH
THGFCCTEAG SLWVAQHVAN CIKKQTACTN Q*