GBrowse Details

Vigan.04G351300.01

Basic Information:
Name: Vigan.04G351300.01
Multiple alignment
Variant Information
Position: Chr04:47294143..47297151 (+ strand)
Length: 3009
Functional Information:
Description: Similar to 2-cys peroxiredoxin. [D5FUD7, Vigna radiata]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: antioxidant activity (GO:0016209)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: peroxiredoxin activity (GO:0051920)
InterPro: Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant (IPR000866)
Thioredoxin-like fold (IPR012336)
Peroxiredoxin, C-terminal (IPR019479)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:32.76,22.07,58.91,178.59,29.36,99.44,16.72,42.85
Arabidopsis thaliana homolog: AT3G11630.1
Automatic updates:
Name: NM_001317288 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata 2-Cys peroxiredoxin BAS1, chloroplastic-like (LOC106757998), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47294143..47294225 (+ strand)
Length: 83
Type: five_prime_UTR
Position: Chr04:47294226..47294417 (+ strand)
Length: 192
Type: CDS
Position: Chr04:47294996..47295070 (+ strand)
Length: 75
Type: CDS
Position: Chr04:47295144..47295225 (+ strand)
Length: 82
Type: CDS
Position: Chr04:47295303..47295382 (+ strand)
Length: 80
Type: CDS
Position: Chr04:47296085..47296210 (+ strand)
Length: 126
Type: CDS
Position: Chr04:47296420..47296533 (+ strand)
Length: 114
Type: CDS
Position: Chr04:47296673..47296789 (+ strand)
Length: 117
Type: CDS
Position: Chr04:47296790..47297151 (+ strand)
Length: 362
Type: three_prime_UTR


>Vigan.04G351300.01
GATTTGGTAA GTCATAATTG GATAGATACT GCTTTCTCCG TCGTCCATTC TTTTCTATCT TACCTTCTCT GCCTCACTCT
CCCATGGCTT CCTCCGCACC TTCTGCTTCT CTCATCTCCT CAAACCCTAA CATTCTCTTC TCTCCCAAAT TCCCTTCTTC
TTCTTCCTTT TCTTCCCTCT CCTTCCCCAA TTCCTCCAAT TCCATTTTCA AACCTTTACG CACTTCTCTT AATCCTTCAT
CTCCCGCTCT CAAACCCCTC GTTGCCAGGG CTTCGAGTGA ACTTCCGTTA GTTGGGAACA CAGCACCGGA TTTTGAAGCA
GAGGCTGTTT TTGATCAGGA GTTCATCAAG GTCAAACTAT CTGAATATAT TGGGAAAAAA TATGTTATCC TCTTTTTCTA
CCCATTGGAT TTCACATTCG TTTGCCCGAC AGAAATCACC GCCTTCAGTG ACCGGCATGC AGAGTTTGAG GAACTAAACA
CAGAGATTTT GGGTGTTTCA GTTGACAGTG TGTTTTCACA CCTTGCATGG GTTCAAACTG ATAGAAAGTC GGGTGGTCTT
GGCGACCTGA AGTATCCTTT GATTTCTGAT GTCACCAAAT CTATCTCGAA ATCTTATGGT GTTCTCATTC CCGATCAGGG
GATTGCATTG AGAGGATTGT TCATTATTGA CAAGGAAGGG GTTATCCAGC ATTCTACCAT TAACAACCTG GCCATTGGTA
GAAGTGTTGA TGAGACAAAG AGAACACTCC AGGCCTTGCA GTATGTGCAG GAGAACCCAG ATGAAGTTTG CCCAGCTGGG
TGGAAGCCTG GTGAGAAGTC CATGAAACCA GACCCTAAAC TTAGCAAAGA GTACTTCTCT GCTATTTAGG GAGGATGACA
GTTTAAGGCT ATCAATTGCT CATCTTTATC AATCAATGGT AATCTGTATT ATGCAACGCA AGTTTATAAA GTTTTGATGG
ACAGGGTCTG TTTCATGATT ATATAAAGGC ATACAATTCA ATGATTTTAT TATGTATCAA TTTTGACCAT TACGTCGGTT
TATGATGTAT GGAGCAAAAA GTGTCTTGAT TTTGTAGTCT TTATTATGGG ATTTCCCCGT TCAAAAGTAT GAGTCTTCCA
TTCAATGGGT TGGCTTTATT TGGCATGAGT ATTCCCTTCG AATGGTGAAG TTTATTATGG TTTTGAAATC AATTTCTAAA
GATCACTGTA TCATAATTTT CTTTTAAGTG G

>Vigan.04G351300.01
ATGGCTTCCT CCGCACCTTC TGCTTCTCTC ATCTCCTCAA ACCCTAACAT TCTCTTCTCT CCCAAATTCC CTTCTTCTTC
TTCCTTTTCT TCCCTCTCCT TCCCCAATTC CTCCAATTCC ATTTTCAAAC CTTTACGCAC TTCTCTTAAT CCTTCATCTC
CCGCTCTCAA ACCCCTCGTT GCCAGGGCTT CGAGTGAACT TCCGTTAGTT GGGAACACAG CACCGGATTT TGAAGCAGAG
GCTGTTTTTG ATCAGGAGTT CATCAAGGTC AAACTATCTG AATATATTGG GAAAAAATAT GTTATCCTCT TTTTCTACCC
ATTGGATTTC ACATTCGTTT GCCCGACAGA AATCACCGCC TTCAGTGACC GGCATGCAGA GTTTGAGGAA CTAAACACAG
AGATTTTGGG TGTTTCAGTT GACAGTGTGT TTTCACACCT TGCATGGGTT CAAACTGATA GAAAGTCGGG TGGTCTTGGC
GACCTGAAGT ATCCTTTGAT TTCTGATGTC ACCAAATCTA TCTCGAAATC TTATGGTGTT CTCATTCCCG ATCAGGGGAT
TGCATTGAGA GGATTGTTCA TTATTGACAA GGAAGGGGTT ATCCAGCATT CTACCATTAA CAACCTGGCC ATTGGTAGAA
GTGTTGATGA GACAAAGAGA ACACTCCAGG CCTTGCAGTA TGTGCAGGAG AACCCAGATG AAGTTTGCCC AGCTGGGTGG
AAGCCTGGTG AGAAGTCCAT GAAACCAGAC CCTAAACTTA GCAAAGAGTA CTTCTCTGCT ATTTAG

>Vigan.04G351300.01
MASSAPSASL ISSNPNILFS PKFPSSSSFS SLSFPNSSNS IFKPLRTSLN PSSPALKPLV ARASSELPLV GNTAPDFEAE
AVFDQEFIKV KLSEYIGKKY VILFFYPLDF TFVCPTEITA FSDRHAEFEE LNTEILGVSV DSVFSHLAWV QTDRKSGGLG
DLKYPLISDV TKSISKSYGV LIPDQGIALR GLFIIDKEGV IQHSTINNLA IGRSVDETKR TLQALQYVQE NPDEVCPAGW
KPGEKSMKPD PKLSKEYFSA I*