GBrowse Details

Vigan.04G353300.01

Basic Information:
Name: Vigan.04G353300.01
Multiple alignment
Variant Information
Position: Chr04:47420682..47427826 (+ strand)
Length: 7145
Functional Information:
Description: Similar to Digalactosyldiacylglycerol synthase 1. [Q07A01, Vigna unguiculata]
GO: Biological Process: biosynthetic process (GO:0009058)
InterPro: Glycosyl transferase, family 1 (IPR001296)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.94,11.07,18.14,59.72,11.13,6.86,10.02,14.63
Arabidopsis thaliana homolog: AT3G11670.1, AT4G00550.1
Automatic updates:
Name: AY635907 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max digalactosyldiacylglycerol synthase 1 (DGD1) mRNA, complete cds.
PubMed ID: 15159398 NCBI(pubmed)
Status: Known Variant
Name: NM_001251241 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max digalactosyldiacylglycerol synthase 1 (DGD1), mRNA.
PubMed ID: 15159398 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:47420682..47420762 (+ strand)
Length: 81
Type: five_prime_UTR
Position: Chr04:47420763..47421347 (+ strand)
Length: 585
Type: CDS
Position: Chr04:47421997..47422029 (+ strand)
Length: 33
Type: CDS
Position: Chr04:47422557..47422644 (+ strand)
Length: 88
Type: CDS
Position: Chr04:47424597..47425081 (+ strand)
Length: 485
Type: CDS
Position: Chr04:47425161..47425427 (+ strand)
Length: 267
Type: CDS
Position: Chr04:47425710..47426059 (+ strand)
Length: 350
Type: CDS
Position: Chr04:47426410..47426944 (+ strand)
Length: 535
Type: CDS
Position: Chr04:47426945..47427826 (+ strand)
Length: 882
Type: three_prime_UTR


>Vigan.04G353300.01
CTTACGAAAG GAAACACAAT TCGTTATTCT TCCGCGTTGC ATACACTCTT AGAAACAACG CACTGGTGTC GGAGTTGAGC
CATGGCGACG CATCCGCAAA CTCCGACCTC ATCGAACGCC TTCTCCTTCC TGTCGAAGGG CTGGCGCGAG GTTCGAGACT
CGGCGGACGC TGATATCCAA CTCATGCGTG ACCGAGCGAA CTCGTTCAAA GACCTAGCCA CGTCGTTCGA CCGTGAGCTC
GAGAACTTCT TCAATTCCGC AACGCCGCCG TTCTCGGTTC CGGCCATGCG CTCTCCGCCG CCTAGGGAGA TCGAGTTCGT
CAAGAGTCTG CGCCCGAAGC TGTCGGAGAT TCGACGCGCC TACTCCTCAC CCGATTTCAG CAAGAGGGTT CTGGAGAAAT
GGAGCCCGAG GTCGCGGATT CGAATCGACC TTTCCGCGAT AAAGAAGGCT ATTGTGTCGG CGGAGGAAGA TGGGATTGTG
GATTTCGAGA AGAGGGGAAG GAGGTTGAGT TTCTGGGAGG AGTGGAAAAA CGAGGGCGAG GGTGAATCGA AGGACTGGGA
GCCGATTCGT GCATTGAAGA TCAGGCTCAA GGAGTTTGAG AAGCGCGGTT CTTCTTTCGA GGCTTTCAAG AACAGTGAAT
TCTTGGAGAA AGTCAAGTCT GGCTTGAAAT CAATGTGCAA GGAGCCTGAG GAGTCAAAGG AAGTGCCACC ATTGGATGTA
CCCGAACTTC TTGCCTACTT TGTAAAACAG TCTGGGCCAT TTCTGGACCA TCTTGGAGTG AAAAGAGACG TATGTGACAA
GATAGTTGAA AGTTTGTATA GCAAACGCAG AAACCATCTT CTAGTGCAAT CCCTATCTGG GGAAGAGTCT TCTATTGTTG
GGAATGGAAA CATAAATGAT GAATTGGATT TACGAATAGC AAGCGTCCTT CAGAGCACAG GACACCGTCA CGAAGGTGGA
TTCTGGACAG ACCATGCTAA GCATGATCCG TCTGATAGTG AAAGGCATGT TGCAATAGTC ACAACTGCTA GTCTTCCTTG
GATGACAGGA ACAGCTGTAA ACCCCCTATT TCGAGCTGCA TATTTATCAC AATCTGCAAA GCAGAAAGTC ACTCTGTTGG
TTCCATGGCT TTCTAAATCA GATCAAGAGC TTGTTTATCC CAGCAGTCTT ACTTTTACTT CACCAGAAGA ACAGGAAGTT
TACATACGTA GCTGGCTTGA AGAAAGGATT GGTTTTAAGG CAGACTTCAA AATTTCTTTT TATCCTGGGA AGTTTTCAAA
GGAAAGACGG AGTATAATAC CTGCTGGAGA TACTTCTCAA TTTATACCAT CCAAGGATGC TGACATTGCT ATCCTGGAAG
AGCCGGAACA TTTAAATTGG TATCATCATG GCAAACGTTG GACTGACAAA TTCAACCATG TTGTTGGTAT TGTTCACACA
AATTACTTGG AATATATCAA GAGGGAGAAA AATGGAGCAC TCCAGGCATT CTTTGTGAAA CACATAAACA ACTGGGTTAC
AAGAGCATAC TGCCACAAGG TTCTTCGTCT CTCAGCTGCT ACTCAGAATT TACCCAAGTC TGTAATTTGC AATGTTCATG
GTGTGAATCC AAAGTTCTTG GAAATTGGAG AAAAAATTGC TGCAGAGAGG GAGCTTGGGC AGAAATCCTT TACAAAAGGG
GCGTATTTCT TGGGAAAGAT GGTGTGGGCA AAGGGATATA AGGAGTTGAT AGATTTATTA GCAAAGCATA AGGCGGACCT
TGACGGCTTC AAGTTGGATG TGTTTGGAAA TGGAGAGGAT GCTAATGAAG TTCAGAGTGC AGCTAGGAAG TTAGATTTGA
ATCTCAGCTT TCAAAAAGGA AGAGATCATG CAGACGATTC TCTTCACGGG TACAAAGTTT TTATAAATCC TAGCATTAGC
GATGTGCTAT GCACTGCTAC AGCTGAGGCA CTTGCCATGG GAAAATTTGT AGTTTGTGCA GATCATCCGT CAAACGAGTT
CTTCAGGTCA TTTCCCAACT GTTTGACGTA CAGGACGTCC GAAGACTTTG TGGCAAAAGT AAAAGAAGCA TTAGAAAACG
AGCCGTATCC TCTAACACCT GAGCAAAGAT ATCAACTTTC TTGGGAGGCC GCTACTCAAA GATTTATGGA ATATTCTGAG
CTTGACAGCA TCCTGAATAA GGAAAATAAT GGTGAAAAGT CAAGCCTGGA TAAAGGAAAG CTCGTTCCCA AGTCAGTTTC
AATGCCTAAT CTGACGGAAC TAGTGGATGG AGGCTTAGCA TTTGCTCACT ATTGTCTCAC TGGGAATGAA TTCCTGAGAT
TATGCACAGG AGCAATACCT GGGACACGTG ACTACGATAA ACAGCATTGT AAAGACCTTC ATCTTTTGCC GCCGCAGGTA
GAAAATCCCA TCTATGGCTG GTGAATGGAT TGACTAGTTT GAACAGGTGG CGAAGGGAAA CTTGTCATAC CAGATCATAA
CAAGCAGTAC TGTGAAAACT ATCATCTCAT GCTTGTAGGT AGAAAAACTT ATGGATGGCT GGGGATCGTT TAGTGGTTTG
AATTTTAGTT TCTGCTCTGA ATTACAGTGG TTTGTCTTAG GTACTAGCAT TCTAGGTTTT CAATTCTTTA AATTTTGTAG
TTCTTTTTGT TTTTTTGTAA GTGATGTAGT TTAATATTTT ACCAAAACAC TAATAGAAAG CTAATGTAAA GTTGCATGAC
AAAAAGTAGA ACGTTCTGCC ACGTAATTAG TGGAGAATAA GCTGTAATAA ATTTGCATCG GTTTACGTGG AATAAATTGT
TCAGTTGTGG TAACTTGAAG GACTTCCTTT AGGGTATTCA CTCTCCACAC GGAAACATCA GGCATTTTGG TTAGTGGGAA
GGAGAGGGAA ATTAAAGAAT AAAGGGCATT GCTGCTGTGA TCTTAATCAG GAAAGAAATT AGTTCAAAAA GGGGAAGAAA
ATGTTGTCAC TGATTTATGT AAGGATGAAT AAACTTCAAA GGCAATTGCT TGCTGCACCC TATCAATGGA ATTCCATTTT
TATCCTTGGT TGTTTATTTG AAAGTTGTGA GACAATGTTG AATTGGTTTG GAGTGTTTTT TGTGTGGGGT TTTCTGGGAA
GCTTTAGTGG GGGTGGAGGT GGTGGTGATT TGCAAAAGCC AGACAAGCTG TAGGAGGTGA GGAATACACT TCCAGAAGAT
GTGATCCTGT ATAGATGTGG GAGGTGAGAA ATGATTTTCC GAATTCGTGT TTCTGGAAGA GTAAAGTATC ATTCTGGAAA
AATCATTCCA GAAGTAGTTG AGGTAG

>Vigan.04G353300.01
ATGGCGACGC ATCCGCAAAC TCCGACCTCA TCGAACGCCT TCTCCTTCCT GTCGAAGGGC TGGCGCGAGG TTCGAGACTC
GGCGGACGCT GATATCCAAC TCATGCGTGA CCGAGCGAAC TCGTTCAAAG ACCTAGCCAC GTCGTTCGAC CGTGAGCTCG
AGAACTTCTT CAATTCCGCA ACGCCGCCGT TCTCGGTTCC GGCCATGCGC TCTCCGCCGC CTAGGGAGAT CGAGTTCGTC
AAGAGTCTGC GCCCGAAGCT GTCGGAGATT CGACGCGCCT ACTCCTCACC CGATTTCAGC AAGAGGGTTC TGGAGAAATG
GAGCCCGAGG TCGCGGATTC GAATCGACCT TTCCGCGATA AAGAAGGCTA TTGTGTCGGC GGAGGAAGAT GGGATTGTGG
ATTTCGAGAA GAGGGGAAGG AGGTTGAGTT TCTGGGAGGA GTGGAAAAAC GAGGGCGAGG GTGAATCGAA GGACTGGGAG
CCGATTCGTG CATTGAAGAT CAGGCTCAAG GAGTTTGAGA AGCGCGGTTC TTCTTTCGAG GCTTTCAAGA ACAGTGAATT
CTTGGAGAAA GTCAAGTCTG GCTTGAAATC AATGTGCAAG GAGCCTGAGG AGTCAAAGGA AGTGCCACCA TTGGATGTAC
CCGAACTTCT TGCCTACTTT GTAAAACAGT CTGGGCCATT TCTGGACCAT CTTGGAGTGA AAAGAGACGT ATGTGACAAG
ATAGTTGAAA GTTTGTATAG CAAACGCAGA AACCATCTTC TAGTGCAATC CCTATCTGGG GAAGAGTCTT CTATTGTTGG
GAATGGAAAC ATAAATGATG AATTGGATTT ACGAATAGCA AGCGTCCTTC AGAGCACAGG ACACCGTCAC GAAGGTGGAT
TCTGGACAGA CCATGCTAAG CATGATCCGT CTGATAGTGA AAGGCATGTT GCAATAGTCA CAACTGCTAG TCTTCCTTGG
ATGACAGGAA CAGCTGTAAA CCCCCTATTT CGAGCTGCAT ATTTATCACA ATCTGCAAAG CAGAAAGTCA CTCTGTTGGT
TCCATGGCTT TCTAAATCAG ATCAAGAGCT TGTTTATCCC AGCAGTCTTA CTTTTACTTC ACCAGAAGAA CAGGAAGTTT
ACATACGTAG CTGGCTTGAA GAAAGGATTG GTTTTAAGGC AGACTTCAAA ATTTCTTTTT ATCCTGGGAA GTTTTCAAAG
GAAAGACGGA GTATAATACC TGCTGGAGAT ACTTCTCAAT TTATACCATC CAAGGATGCT GACATTGCTA TCCTGGAAGA
GCCGGAACAT TTAAATTGGT ATCATCATGG CAAACGTTGG ACTGACAAAT TCAACCATGT TGTTGGTATT GTTCACACAA
ATTACTTGGA ATATATCAAG AGGGAGAAAA ATGGAGCACT CCAGGCATTC TTTGTGAAAC ACATAAACAA CTGGGTTACA
AGAGCATACT GCCACAAGGT TCTTCGTCTC TCAGCTGCTA CTCAGAATTT ACCCAAGTCT GTAATTTGCA ATGTTCATGG
TGTGAATCCA AAGTTCTTGG AAATTGGAGA AAAAATTGCT GCAGAGAGGG AGCTTGGGCA GAAATCCTTT ACAAAAGGGG
CGTATTTCTT GGGAAAGATG GTGTGGGCAA AGGGATATAA GGAGTTGATA GATTTATTAG CAAAGCATAA GGCGGACCTT
GACGGCTTCA AGTTGGATGT GTTTGGAAAT GGAGAGGATG CTAATGAAGT TCAGAGTGCA GCTAGGAAGT TAGATTTGAA
TCTCAGCTTT CAAAAAGGAA GAGATCATGC AGACGATTCT CTTCACGGGT ACAAAGTTTT TATAAATCCT AGCATTAGCG
ATGTGCTATG CACTGCTACA GCTGAGGCAC TTGCCATGGG AAAATTTGTA GTTTGTGCAG ATCATCCGTC AAACGAGTTC
TTCAGGTCAT TTCCCAACTG TTTGACGTAC AGGACGTCCG AAGACTTTGT GGCAAAAGTA AAAGAAGCAT TAGAAAACGA
GCCGTATCCT CTAACACCTG AGCAAAGATA TCAACTTTCT TGGGAGGCCG CTACTCAAAG ATTTATGGAA TATTCTGAGC
TTGACAGCAT CCTGAATAAG GAAAATAATG GTGAAAAGTC AAGCCTGGAT AAAGGAAAGC TCGTTCCCAA GTCAGTTTCA
ATGCCTAATC TGACGGAACT AGTGGATGGA GGCTTAGCAT TTGCTCACTA TTGTCTCACT GGGAATGAAT TCCTGAGATT
ATGCACAGGA GCAATACCTG GGACACGTGA CTACGATAAA CAGCATTGTA AAGACCTTCA TCTTTTGCCG CCGCAGGTAG
AAAATCCCAT CTATGGCTGG TGA

>Vigan.04G353300.01
MATHPQTPTS SNAFSFLSKG WREVRDSADA DIQLMRDRAN SFKDLATSFD RELENFFNSA TPPFSVPAMR SPPPREIEFV
KSLRPKLSEI RRAYSSPDFS KRVLEKWSPR SRIRIDLSAI KKAIVSAEED GIVDFEKRGR RLSFWEEWKN EGEGESKDWE
PIRALKIRLK EFEKRGSSFE AFKNSEFLEK VKSGLKSMCK EPEESKEVPP LDVPELLAYF VKQSGPFLDH LGVKRDVCDK
IVESLYSKRR NHLLVQSLSG EESSIVGNGN INDELDLRIA SVLQSTGHRH EGGFWTDHAK HDPSDSERHV AIVTTASLPW
MTGTAVNPLF RAAYLSQSAK QKVTLLVPWL SKSDQELVYP SSLTFTSPEE QEVYIRSWLE ERIGFKADFK ISFYPGKFSK
ERRSIIPAGD TSQFIPSKDA DIAILEEPEH LNWYHHGKRW TDKFNHVVGI VHTNYLEYIK REKNGALQAF FVKHINNWVT
RAYCHKVLRL SAATQNLPKS VICNVHGVNP KFLEIGEKIA AERELGQKSF TKGAYFLGKM VWAKGYKELI DLLAKHKADL
DGFKLDVFGN GEDANEVQSA ARKLDLNLSF QKGRDHADDS LHGYKVFINP SISDVLCTAT AEALAMGKFV VCADHPSNEF
FRSFPNCLTY RTSEDFVAKV KEALENEPYP LTPEQRYQLS WEAATQRFME YSELDSILNK ENNGEKSSLD KGKLVPKSVS
MPNLTELVDG GLAFAHYCLT GNEFLRLCTG AIPGTRDYDK QHCKDLHLLP PQVENPIYGW *