GBrowse Details

Vigan.04G354600.01

Basic Information:
Name: Vigan.04G354600.01
Multiple alignment
Variant Information
Position: Chr04:47566909..47574069 (+ strand)
Length: 7161
Functional Information:
Description: Similar to deoxyribonuclease TATDN1-like. [XP_004494257.1, Cicer arietinum]
GO: Molecular Function: endodeoxyribonuclease activity, producing 5'-phosphomonoesters (GO:0016888)
InterPro: TatD family (IPR001130)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:5.73,6.55,4.80,5.34,7.24,3.60,6.06,4.68
Arabidopsis thaliana homolog: AT3G52390.2
Automatic updates:
Name: NM_001254631 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative deoxyribonuclease TATDN1-like (LOC100814321), mRNA.
PubMed ID: 21667246 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:47566909..47566979 (+ strand)
Length: 71
Type: five_prime_UTR
Position: Chr04:47566980..47567001 (+ strand)
Length: 22
Type: CDS
Position: Chr04:47567089..47567109 (+ strand)
Length: 21
Type: CDS
Position: Chr04:47567179..47567279 (+ strand)
Length: 101
Type: CDS
Position: Chr04:47567575..47567632 (+ strand)
Length: 58
Type: CDS
Position: Chr04:47567723..47567766 (+ strand)
Length: 44
Type: CDS
Position: Chr04:47567835..47567915 (+ strand)
Length: 81
Type: CDS
Position: Chr04:47568147..47568217 (+ strand)
Length: 71
Type: CDS
Position: Chr04:47568338..47568448 (+ strand)
Length: 111
Type: CDS
Position: Chr04:47568875..47568957 (+ strand)
Length: 83
Type: CDS
Position: Chr04:47569352..47569568 (+ strand)
Length: 217
Type: CDS
Position: Chr04:47569852..47569935 (+ strand)
Length: 84
Type: CDS
Position: Chr04:47573427..47573493 (+ strand)
Length: 67
Type: CDS
Position: Chr04:47573494..47574069 (+ strand)
Length: 576
Type: three_prime_UTR


>Vigan.04G354600.01
CTCCTTCTTC CATTTACCAA CGAACTAAAC TCCACTTGCT CCTCACTGTT GAGCACGCAA GCCAACCAAT CATGGCAGGC
ATTCGAATGA TAGATATAGC CGTCAATTTC ACCGATGGCA TGTTCAAGGG AATCTACCAC GGCAAGCAAT GTCACGTCTC
CGATATTGCA ACCGTTTTGA ACAGGGCTTG GGCTGCTGGC GTCACCCGAA TTATTGTAAC TGGTGGGTCT CTTGAAGAAT
CAAGGGAAGC ACTTGCAATT GCAGAAACAG ATGGAAGACT TTTCTGCACC GTTGGTGTGC ATCCAACACG ATGCAAGGAA
TTTGAGGAGA GTGGAGATCC AGAGAAGCAT TTTCAAGCTC TTTTGTCCTT GGCTAAAGAC GGAATTCAGA AAGGAAAGGT
GGTTGCTATT GGAGAATGTG GATTGGACTA TGACAGGCTT CATTTTTGCC CAGCAGAGAT TCAAAAGAAG TATTTCGAGA
AGCAATTTGA ATTAGCACAT ACCACAAAAC TGCCTATGTT TTTGCACATG CGAGAAGCTG CTGCAGATTT CTGTGAAATA
GTGGAGAAAA ATAAGGACAG GTTCACTGCC GGAGTCACCC ATTCCTTTAC TGGTAGTATG GATGATAGCA TTAAGCTTCT
CTCATTTGAT AAAATGTACA TAGGCATAAA TGGGTGCTCT CTGAAGACAA CTGAGAACCT TGATGTTGTT AAGGGTATAC
CTATTGAAAG AATGATGATT GAGACAGACT CACCATACTG TGAAATCAAG AATACTCATG CAGGAATTGG TTTTGTTAAA
TCTACATGGC CTTCTAAGAA GAAAGAGAAG TATGATCAAG AGTGCATTGT TAAAGGCCGA AATGAACCTT GTTTAGTTAA
GCAAGTTCTT GAAGTTGTTG CTGGCTGTAA AGGCATCACT GACGTGGCTA ACCTCAGCAG AACAGTATAC CATAACACTT
GCAGGATTTT TTTCCCTCAT GACTTAGATT CTGCAGCTGA TGCTCTACTA GCTGGCGGTA ATCCTTCTTA AACAGACCTG
CCAGTGACTT GACCTTTGCT TTTCTTCGGA GCTGTTCGGT AACCCATATC TGCATTTTCT TGAGAAAGCT AAGTGTCCTT
GAAATGCAGC TGAGATTGTC CGTCCAGTCC TCTTTGGGAA GTGACAAATC AGAACTGATT CCCAGAGGTC GATCTGATGA
GTGTATGACA AATTATTTTA TTGTATTTTA TTGTATTTTA ATGAGCTTAT AATGTGAAGA AACTGTGGTA CTAAACCAGA
AGCCAATAGG ATTCGATATG TCGTATGGAG TGGATATGTT TTTGTTGGAT GTCATGTTAA GAAGTAAATC GATGGAGGCT
AATTGGTGGT CGATCTGCAG TCTCTTAAGT GCTGCTGCCT CCAAACATTT TTGTTGCTTT TCACCTTTTT TTAAGTCAGT
AGAGTTCCAC TGCTCAAGCC TGGTGTAAGA TGATGCAACA GTCACTGTCA TCGTCATATC ATGCTGTTTC AAAAAGTTAT
TAAATTAACT AATTATAAAA CCTGTTGTTG ACAATGATGG ACATTGATCT GAAAATGTGA TATCGAGCAG AGCTATCATG
AAGGAAT

>Vigan.04G354600.01
ATGGCAGGCA TTCGAATGAT AGATATAGCC GTCAATTTCA CCGATGGCAT GTTCAAGGGA ATCTACCACG GCAAGCAATG
TCACGTCTCC GATATTGCAA CCGTTTTGAA CAGGGCTTGG GCTGCTGGCG TCACCCGAAT TATTGTAACT GGTGGGTCTC
TTGAAGAATC AAGGGAAGCA CTTGCAATTG CAGAAACAGA TGGAAGACTT TTCTGCACCG TTGGTGTGCA TCCAACACGA
TGCAAGGAAT TTGAGGAGAG TGGAGATCCA GAGAAGCATT TTCAAGCTCT TTTGTCCTTG GCTAAAGACG GAATTCAGAA
AGGAAAGGTG GTTGCTATTG GAGAATGTGG ATTGGACTAT GACAGGCTTC ATTTTTGCCC AGCAGAGATT CAAAAGAAGT
ATTTCGAGAA GCAATTTGAA TTAGCACATA CCACAAAACT GCCTATGTTT TTGCACATGC GAGAAGCTGC TGCAGATTTC
TGTGAAATAG TGGAGAAAAA TAAGGACAGG TTCACTGCCG GAGTCACCCA TTCCTTTACT GGTAGTATGG ATGATAGCAT
TAAGCTTCTC TCATTTGATA AAATGTACAT AGGCATAAAT GGGTGCTCTC TGAAGACAAC TGAGAACCTT GATGTTGTTA
AGGGTATACC TATTGAAAGA ATGATGATTG AGACAGACTC ACCATACTGT GAAATCAAGA ATACTCATGC AGGAATTGGT
TTTGTTAAAT CTACATGGCC TTCTAAGAAG AAAGAGAAGT ATGATCAAGA GTGCATTGTT AAAGGCCGAA ATGAACCTTG
TTTAGTTAAG CAAGTTCTTG AAGTTGTTGC TGGCTGTAAA GGCATCACTG ACGTGGCTAA CCTCAGCAGA ACAGTATACC
ATAACACTTG CAGGATTTTT TTCCCTCATG ACTTAGATTC TGCAGCTGAT GCTCTACTAG CTGGCGGTAA TCCTTCTTAA


>Vigan.04G354600.01
MAGIRMIDIA VNFTDGMFKG IYHGKQCHVS DIATVLNRAW AAGVTRIIVT GGSLEESREA LAIAETDGRL FCTVGVHPTR
CKEFEESGDP EKHFQALLSL AKDGIQKGKV VAIGECGLDY DRLHFCPAEI QKKYFEKQFE LAHTTKLPMF LHMREAAADF
CEIVEKNKDR FTAGVTHSFT GSMDDSIKLL SFDKMYIGIN GCSLKTTENL DVVKGIPIER MMIETDSPYC EIKNTHAGIG
FVKSTWPSKK KEKYDQECIV KGRNEPCLVK QVLEVVAGCK GITDVANLSR TVYHNTCRIF FPHDLDSAAD ALLAGGNPS*