GBrowse Details

Vigan.04G356900.01

Basic Information:
Name: Vigan.04G356900.01
Multiple alignment
Variant Information
Position: Chr04:47775743..47778968 (+ strand)
Length: 3226
Functional Information:
Description: Similar to pollen-specific protein SF3-like isoform X2. [XP_004503223.1, Cicer arietinum]
GO: Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, LIM-type (IPR001781)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1.16,2.53,25.72,8.85,17.40,35.39,41.75,22.90
Arabidopsis thaliana homolog: AT2G39900.1
Automatic updates:
Name: BT093203 NCBI(nuccore)
Organism: Glycine max
Description: Soybean clone JCVI-FLGm-17A9 unknown mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001254181 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max LIM domain-containing protein WLIM2b-like (LOC100809121), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:47775743..47776255 (+ strand)
Length: 513
Type: five_prime_UTR
Position: Chr04:47776256..47776390 (+ strand)
Length: 135
Type: CDS
Position: Chr04:47777061..47777160 (+ strand)
Length: 100
Type: CDS
Position: Chr04:47777257..47777291 (+ strand)
Length: 35
Type: CDS
Position: Chr04:47777393..47777482 (+ strand)
Length: 90
Type: CDS
Position: Chr04:47778501..47778722 (+ strand)
Length: 222
Type: CDS
Position: Chr04:47778723..47778968 (+ strand)
Length: 246
Type: three_prime_UTR


>Vigan.04G356900.01
TTTTCATTAT GATGACCAAG ATATGATCTG TTATCAATCA ATATAAATTG AATGACATTC ATTTTCCAGA GTTCCAACCA
GAGTTGTCTC TCAACTTCAT CTTCTTGTTC TTATTCACTG TCGCCCTCAG AATTTCTCAC TCTATCTTTA TCTTCAGCTT
TTCAGTTCAA AGTTTCAGAT CACAACCGAT CCACCATTCA CCACTTTCTC TTCGCAAGGT ATGCTGAAAA TGAAATACCC
ATTTTGACTG CGTTAACTCT ATACCATTTC ATTTCTCTCA ACCATACCAA ACAGATTCAT TCATACGAGG ATTTTTTAAA
GCTTTCAAAA TTTGTTTTTT CTTCTTCGGT TTGCTCCAAC TTTTTGTGCT CATTGTTGTT AATGTTTTTG GTTGACATGG
GTAGCTCAAG TTATTGTCAT AGGCAAATCT AACACTAAAA GTAGTCATTG AAGCCGATCC AGTGCCTTGT GAATTTGGAA
TTGGTGGTGA AATTAGATCT AAAAGCCACA GCAATGTCTT TTATCGGAAC CCAGCAGAAG TGCAAGGCTT GTGAGAAAAC
GGTTTATCCC GTTGATCAGC TTTCTGCAGA TGGCACTGCT TATCACAAAG CTTGCTTCAG GTGCTCCCAC TGCAAAGGAA
CATTAAAGCT GAGCAACTAT TCCTCAATGG AAGGAGTTCT TTACTGTAAA CCTCACTATG AGCAGCTCTT CAAGGAGACT
GGCACCTTCA GCAAGAACTT CCAGTCACCT GCAAAGTTAG CTGATAAGAC TACTCCTGAG CTGACAAGGT CATCTAGCAA
AGCTGCGAGC ATGTTTTCTG GCACACAAGA AAAGTGTGCA ACATGTGGGA AAACTGCTTA TCCATTGGAG AAGGTAACAG
TGGAAGGGCA GGCCTATCAC AAATCATGTT TCAAGTGTTC ACATGGTGGT TGTCCCATAA CCCCATCGAA TTATGCAGCC
CTTGAGGGCA TTCTGTATTG CAAGCACCAT TTCTCCCAGC TTTTCAAGGA GAAAGGGAGC TATAATCATC TGACAAAGTC
TGCAACAATC AAACGGGCGG CGGCAGCAGC AGCAGCCACT GTTCCAGAAT CTTGAATGTT GCTTCCTTCT TCTATTGCCT
TTTCTTTAAC AGAACATTTT GGTCTATCGA GCAAGTGTTT GTATGTGTGG CTTTTTTTCT CTCGCGACTT CATCATTTCT
GATATTTTTT ACTTACACAT GCGTGGCGTG CAAATCTTGT GTGGTTTATT TATACAATGG ACATTCCGTA ATGACTAACG
AGTGCTTGAT TTGCAAGATT ATCATCCTAA TTTGATGATA TTGCCTCCTT TACATTTTCC A

>Vigan.04G356900.01
ATGTCTTTTA TCGGAACCCA GCAGAAGTGC AAGGCTTGTG AGAAAACGGT TTATCCCGTT GATCAGCTTT CTGCAGATGG
CACTGCTTAT CACAAAGCTT GCTTCAGGTG CTCCCACTGC AAAGGAACAT TAAAGCTGAG CAACTATTCC TCAATGGAAG
GAGTTCTTTA CTGTAAACCT CACTATGAGC AGCTCTTCAA GGAGACTGGC ACCTTCAGCA AGAACTTCCA GTCACCTGCA
AAGTTAGCTG ATAAGACTAC TCCTGAGCTG ACAAGGTCAT CTAGCAAAGC TGCGAGCATG TTTTCTGGCA CACAAGAAAA
GTGTGCAACA TGTGGGAAAA CTGCTTATCC ATTGGAGAAG GTAACAGTGG AAGGGCAGGC CTATCACAAA TCATGTTTCA
AGTGTTCACA TGGTGGTTGT CCCATAACCC CATCGAATTA TGCAGCCCTT GAGGGCATTC TGTATTGCAA GCACCATTTC
TCCCAGCTTT TCAAGGAGAA AGGGAGCTAT AATCATCTGA CAAAGTCTGC AACAATCAAA CGGGCGGCGG CAGCAGCAGC
AGCCACTGTT CCAGAATCTT GA

>Vigan.04G356900.01
MSFIGTQQKC KACEKTVYPV DQLSADGTAY HKACFRCSHC KGTLKLSNYS SMEGVLYCKP HYEQLFKETG TFSKNFQSPA
KLADKTTPEL TRSSSKAASM FSGTQEKCAT CGKTAYPLEK VTVEGQAYHK SCFKCSHGGC PITPSNYAAL EGILYCKHHF
SQLFKEKGSY NHLTKSATIK RAAAAAAATV PES*