GBrowse Details

Vigan.04G359900.01

Basic Information:
Name: Vigan.04G359900.01
Multiple alignment
Variant Information
Position: Chr04:48003319..48009653 (+ strand)
Length: 6335
Functional Information:
Description: Similar to Pyrroline-5-carboxylate synthetase. [B0ZYQ6, Phaseolus vulgaris]
GO: Biological Process: proline biosynthetic process (GO:0006561)
Biological Process: metabolic process (GO:0008152)
Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: cytoplasm (GO:0005737)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: glutamate 5-kinase activity (GO:0004349)
Molecular Function: glutamate-5-semialdehyde dehydrogenase activity (GO:0004350)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor (GO:0016620)
InterPro: Gamma-glutamyl phosphate reductase GPR (IPR000965)
Aspartate/glutamate/uridylate kinase (IPR001048)
Glutamate/acetylglutamate kinase (IPR001057)
Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase (IPR005715)
Delta l-pyrroline-5-carboxylate synthetase (IPR005766)
Aldehyde dehydrogenase domain (IPR015590)
Aldehyde/histidinol dehydrogenase (IPR016161)
Aldehyde dehydrogenase, N-terminal (IPR016162)
Aldehyde dehydrogenase, C-terminal (IPR016163)
Glutamate 5-kinase, conserved site (IPR019797)
Gamma-glutamyl phosphate reductase GPR, conserved site (IPR020593)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.12,0.49,4.46,3.82,6.01,2.67,2.42,2.94
Arabidopsis thaliana homolog: AT2G39800.1, AT3G55610.1
Automatic updates:
Name: NM_001251224 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max delta-pyrroline-5-carboxylate synthetase (P5CS), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:48003319..48003412 (+ strand)
Length: 94
Type: five_prime_UTR
Position: Chr04:48003413..48003472 (+ strand)
Length: 60
Type: CDS
Position: Chr04:48003612..48003683 (+ strand)
Length: 72
Type: CDS
Position: Chr04:48003785..48003888 (+ strand)
Length: 104
Type: CDS
Position: Chr04:48004012..48004114 (+ strand)
Length: 103
Type: CDS
Position: Chr04:48004300..48004461 (+ strand)
Length: 162
Type: CDS
Position: Chr04:48004982..48005259 (+ strand)
Length: 278
Type: CDS
Position: Chr04:48005756..48005906 (+ strand)
Length: 151
Type: CDS
Position: Chr04:48006005..48006169 (+ strand)
Length: 165
Type: CDS
Position: Chr04:48006257..48006334 (+ strand)
Length: 78
Type: CDS
Position: Chr04:48006686..48006775 (+ strand)
Length: 90
Type: CDS
Position: Chr04:48007118..48007204 (+ strand)
Length: 87
Type: CDS
Position: Chr04:48007320..48007406 (+ strand)
Length: 87
Type: CDS
Position: Chr04:48007509..48007605 (+ strand)
Length: 97
Type: CDS
Position: Chr04:48007710..48007813 (+ strand)
Length: 104
Type: CDS
Position: Chr04:48007904..48007979 (+ strand)
Length: 76
Type: CDS
Position: Chr04:48008132..48008282 (+ strand)
Length: 151
Type: CDS
Position: Chr04:48008411..48008479 (+ strand)
Length: 69
Type: CDS
Position: Chr04:48008688..48008754 (+ strand)
Length: 67
Type: CDS
Position: Chr04:48008847..48008917 (+ strand)
Length: 71
Type: CDS
Position: Chr04:48009124..48009199 (+ strand)
Length: 76
Type: CDS
Position: Chr04:48009200..48009653 (+ strand)
Length: 454
Type: three_prime_UTR


>Vigan.04G359900.01
CACGTGACTT TAAGATTAAA AACTGTTCAC AGGCAGACTC TCTTTCTTCT CTGCCAACTG CACTGAACAA GAACCACAGT
TTGCTGGTCA GAGTATGGAG AACGCAGATC CTAATAGACA TTTTCTCAAA GATGTTAAGC GCATCATTAT CAAGGTTGGG
ACTGCTGTGG TTACTCGCCA AGATGGAAGG TTGGCAGTTG GAAAATTAGG GGCACTCTGT GAGCAGATTA AGGAGCTGAA
CTCTCTTGGT TATGAGATTA TTTTGGTGTC ATCAGGTGCT GTTGGCCTTG GTCGCCAAAG GCTTAGATAC AGAAAATTAA
TTAACAGCAG CTTTGCTGAT CTTCAGAAGC CGCAAATTGA ACTTGATGGC AAGGCTTGTG CTGCTGTTGG ACAGAACAGC
CTTATGGCTC TTTATGATTC TTTGTTTAGT CAGCTAGATG TGACATCTGC CCAGCTTCTT GTGACAGACA ATGATTTTCG
AGACAAAGAT TTCAGAAAGC AACTCAGCGA AACTGTGAAA TCATTGTTAG GATTAAAAGT TATTCCCATA TTCAACGAGA
ACGATGCAGT TAGTACTAGG AAAGCTCCAT ATGAGGATTC TTCTGGCATA TTTTGGGATA ATGACAGTTT ATCAGCTTTA
TTGGCACTGG AATTAAAAGC TGATCTTCTA ATTTTGTTGA GTGACGTAGA GGGTCTTTAT AGTGGTCCTC CAAGTGACCC
ACGTTCAAAG CTTATTCATA CATACATTAA AGAGAAACAT CAAAATGAAA TTACTTTTGG AGACAAGTCT AGAGTGGGAA
GAGGTGGTAT GACTGCCAAA GTAAAGGCTT CTATTCATGC AGCTGAAGCT GGCATTCCTG TTATCATTAC CAGTGGTTTT
GCAGCAGAAA ATATCCTTAA AGTTCTCCAA GGACAACTTA TTGGAACCCT TTTCCATAAA GATGCCCATA AATGGGCCCC
AATAAAAGAG TTTAATGCTC GGGAGATGGC AGTAGCAGCT AGGGACTCTT CCAGAAGGCT TCAGGCTATG TCTTCAGAAG
AGAGGAAACA AATTTTACTA AAAATAGCCG ATGCTTTGGA AGCACATCAA GAAGAGATCA GGATTGAAAA CGAATCCGAT
GTTGCTGCTG CACAAGAAGA AGGATGTGAA AAATCCTTGG TGGCTAGGCT GGTTTTAAAG AAGGAGAAGC TTGCAACCCT
TGCAAACAAC ATTCGACTTA TTGCAAACAT GGAAGATCCC ATTGGTCGAG TGCTTAAACG AACTGAGCTC GCAGAAGGGC
TGATTTTGGA GAAAACATCA TCACCTTTAG GTGTTCTTTT AATTGTTTTT GAGTCTCGCC CTGATGCACT AGTGCAGATA
GCATCTTTGG CTATCCAAAG TGGGAATGGG CTTCTCTTGA AAGGAGGCAA GGAGGCTAAG AGATCAAATG CAATTTTGCA
CAAAGTCATT ACTGAAGCCA TACCAGATTC TGTCGGTGCA AAACTTATTG GACTTGTGAC ATCAAGAGCA GAAATTCCCG
AGTTACTTAA GTTGGATGAT GTAATTGATC TGGTGATTCC AAGAGGCAGC AACCAACTTG TCTCTCAGAT CAAGAGTTCG
ACTAAAATTC CAGTTCTGGG TCATGCTGAT GGAATTTGTC ATGTCTATGT TGATAAATCT GCTGATTTGG AGATGTCAAA
GAGGATTGTA CTGGATGCAA AAATAGATTA TCCAGCAGGC TGCAATGCCA TGGAAACACT TCTTGTTCAC AAGGACTTGG
TAGAGAAAGG TTGGCTCAAT TATATTATTG TTGACCTACG GACAGAAGGT GTTACATTGT TTGGAGGACC GAAGGCAAGT
CCTTTGTTAA ATATTCCTCT TGCTCGTTCG TTACATCATG AGTACAACTC GTTGACATGC ACAGTTGAAA TTGTGGATGA
TGTTTTTGCA GCTATTGATC ATATAAATCT TCATGGAAGT GCACATACTG ATTCCATTGT TACAGAAGAT CATGAAGTAG
CTGATATGTT TCTACGCCAA GTTGACAGTG CTGCTGTTTT TCATAATGCT AGTACAAGAT TCAGTGATGG AGCACGATTT
GGTCTAGGAG CAGAGGTGGG AATAAGTACA AGCAGGATTC ATGCACGGGG TCCAGTAGGA GTTGATGGAT TGTTAACAAC
CAGATGGATT CTCAAAGGAA GTGGACAGAT AGTGGATGGT GACAAAGCAA TTAGCTACAC CCACAAAGAC CTTGCTATTT
GATTCTTGGT TTTTAAAGAT AAAAGTTCAT GGAGGGAGGG GAGAAAAGGA AGGTCATTCA TTAGGATGTG CTTTGTTTTC
TCAATGTGGA GTAAAATTGT ACAATTCATT AGAGGGGAGA AATGTTTATG CTATCTGTTA CTGATTTTTC TGTTCATGAT
GTTATTTATA CTAGAGAGTT GTTTTTCCCC TCATCGTTAG GAAATTTATG GTATTTGTTT AGGATTGTTT TTTTTTTTTT
AAGTGATATC ACTTTTACAG TTGTGAAAAT AATAAAAATA CTTCATCTTT GACTCCAAAA AAGTGGGAAC ATGTTATTTT
CTGCTTCAAA GGAGGATGGG GATTTTTGGA GTGAAAAGAG AGAATATCAT CCCAATATTA GTAGGGGCAA AAGTTGGAGG
AGATATTTTA TCCTTTTACT TTTCCTTCTT TTCTGAACTT TTGAATTAAA TAAGAA

>Vigan.04G359900.01
ATGGAGAACG CAGATCCTAA TAGACATTTT CTCAAAGATG TTAAGCGCAT CATTATCAAG GTTGGGACTG CTGTGGTTAC
TCGCCAAGAT GGAAGGTTGG CAGTTGGAAA ATTAGGGGCA CTCTGTGAGC AGATTAAGGA GCTGAACTCT CTTGGTTATG
AGATTATTTT GGTGTCATCA GGTGCTGTTG GCCTTGGTCG CCAAAGGCTT AGATACAGAA AATTAATTAA CAGCAGCTTT
GCTGATCTTC AGAAGCCGCA AATTGAACTT GATGGCAAGG CTTGTGCTGC TGTTGGACAG AACAGCCTTA TGGCTCTTTA
TGATTCTTTG TTTAGTCAGC TAGATGTGAC ATCTGCCCAG CTTCTTGTGA CAGACAATGA TTTTCGAGAC AAAGATTTCA
GAAAGCAACT CAGCGAAACT GTGAAATCAT TGTTAGGATT AAAAGTTATT CCCATATTCA ACGAGAACGA TGCAGTTAGT
ACTAGGAAAG CTCCATATGA GGATTCTTCT GGCATATTTT GGGATAATGA CAGTTTATCA GCTTTATTGG CACTGGAATT
AAAAGCTGAT CTTCTAATTT TGTTGAGTGA CGTAGAGGGT CTTTATAGTG GTCCTCCAAG TGACCCACGT TCAAAGCTTA
TTCATACATA CATTAAAGAG AAACATCAAA ATGAAATTAC TTTTGGAGAC AAGTCTAGAG TGGGAAGAGG TGGTATGACT
GCCAAAGTAA AGGCTTCTAT TCATGCAGCT GAAGCTGGCA TTCCTGTTAT CATTACCAGT GGTTTTGCAG CAGAAAATAT
CCTTAAAGTT CTCCAAGGAC AACTTATTGG AACCCTTTTC CATAAAGATG CCCATAAATG GGCCCCAATA AAAGAGTTTA
ATGCTCGGGA GATGGCAGTA GCAGCTAGGG ACTCTTCCAG AAGGCTTCAG GCTATGTCTT CAGAAGAGAG GAAACAAATT
TTACTAAAAA TAGCCGATGC TTTGGAAGCA CATCAAGAAG AGATCAGGAT TGAAAACGAA TCCGATGTTG CTGCTGCACA
AGAAGAAGGA TGTGAAAAAT CCTTGGTGGC TAGGCTGGTT TTAAAGAAGG AGAAGCTTGC AACCCTTGCA AACAACATTC
GACTTATTGC AAACATGGAA GATCCCATTG GTCGAGTGCT TAAACGAACT GAGCTCGCAG AAGGGCTGAT TTTGGAGAAA
ACATCATCAC CTTTAGGTGT TCTTTTAATT GTTTTTGAGT CTCGCCCTGA TGCACTAGTG CAGATAGCAT CTTTGGCTAT
CCAAAGTGGG AATGGGCTTC TCTTGAAAGG AGGCAAGGAG GCTAAGAGAT CAAATGCAAT TTTGCACAAA GTCATTACTG
AAGCCATACC AGATTCTGTC GGTGCAAAAC TTATTGGACT TGTGACATCA AGAGCAGAAA TTCCCGAGTT ACTTAAGTTG
GATGATGTAA TTGATCTGGT GATTCCAAGA GGCAGCAACC AACTTGTCTC TCAGATCAAG AGTTCGACTA AAATTCCAGT
TCTGGGTCAT GCTGATGGAA TTTGTCATGT CTATGTTGAT AAATCTGCTG ATTTGGAGAT GTCAAAGAGG ATTGTACTGG
ATGCAAAAAT AGATTATCCA GCAGGCTGCA ATGCCATGGA AACACTTCTT GTTCACAAGG ACTTGGTAGA GAAAGGTTGG
CTCAATTATA TTATTGTTGA CCTACGGACA GAAGGTGTTA CATTGTTTGG AGGACCGAAG GCAAGTCCTT TGTTAAATAT
TCCTCTTGCT CGTTCGTTAC ATCATGAGTA CAACTCGTTG ACATGCACAG TTGAAATTGT GGATGATGTT TTTGCAGCTA
TTGATCATAT AAATCTTCAT GGAAGTGCAC ATACTGATTC CATTGTTACA GAAGATCATG AAGTAGCTGA TATGTTTCTA
CGCCAAGTTG ACAGTGCTGC TGTTTTTCAT AATGCTAGTA CAAGATTCAG TGATGGAGCA CGATTTGGTC TAGGAGCAGA
GGTGGGAATA AGTACAAGCA GGATTCATGC ACGGGGTCCA GTAGGAGTTG ATGGATTGTT AACAACCAGA TGGATTCTCA
AAGGAAGTGG ACAGATAGTG GATGGTGACA AAGCAATTAG CTACACCCAC AAAGACCTTG CTATTTGA

>Vigan.04G359900.01
MENADPNRHF LKDVKRIIIK VGTAVVTRQD GRLAVGKLGA LCEQIKELNS LGYEIILVSS GAVGLGRQRL RYRKLINSSF
ADLQKPQIEL DGKACAAVGQ NSLMALYDSL FSQLDVTSAQ LLVTDNDFRD KDFRKQLSET VKSLLGLKVI PIFNENDAVS
TRKAPYEDSS GIFWDNDSLS ALLALELKAD LLILLSDVEG LYSGPPSDPR SKLIHTYIKE KHQNEITFGD KSRVGRGGMT
AKVKASIHAA EAGIPVIITS GFAAENILKV LQGQLIGTLF HKDAHKWAPI KEFNAREMAV AARDSSRRLQ AMSSEERKQI
LLKIADALEA HQEEIRIENE SDVAAAQEEG CEKSLVARLV LKKEKLATLA NNIRLIANME DPIGRVLKRT ELAEGLILEK
TSSPLGVLLI VFESRPDALV QIASLAIQSG NGLLLKGGKE AKRSNAILHK VITEAIPDSV GAKLIGLVTS RAEIPELLKL
DDVIDLVIPR GSNQLVSQIK SSTKIPVLGH ADGICHVYVD KSADLEMSKR IVLDAKIDYP AGCNAMETLL VHKDLVEKGW
LNYIIVDLRT EGVTLFGGPK ASPLLNIPLA RSLHHEYNSL TCTVEIVDDV FAAIDHINLH GSAHTDSIVT EDHEVADMFL
RQVDSAAVFH NASTRFSDGA RFGLGAEVGI STSRIHARGP VGVDGLLTTR WILKGSGQIV DGDKAISYTH KDLAI*