VIGGS:GBrowse

Vigan.04G360900.01

Basic Information:

Name:	Vigan.04G360900.01 Multiple alignment Variant Information
Position:	Chr04:48111297..48112113 (+ strand)
Length:	817

Functional Information:

Description:	Similar to Ribosomal protein L37. [V7CZ47, Phaseolus vulgaris]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L37e (IPR001569)
	Ribosomal protein L37ae/L37e (IPR011331)
	Zinc-binding ribosomal protein (IPR011332)
	Ribosomal protein L37e, conserved site (IPR018267)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:32.34,24.54,17.46,14.07,47.70,40.06,32.63,14.70

Automatic updates:

Name:	NM_001250326 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max ribosomal protein L37 (RPL37), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:48111297..48111376 (+ strand)
Length:	80
Type:	five_prime_UTR

Position:	Chr04:48111377..48111518 (+ strand)
Length:	142
Type:	CDS

Position:	Chr04:48111589..48111690 (+ strand)
Length:	102
Type:	CDS

Position:	Chr04:48111771..48111817 (+ strand)
Length:	47
Type:	CDS

Position:	Chr04:48111818..48112113 (+ strand)
Length:	296
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G360900.01
CAACTTCTTT CACTTCCTCT CATAGATCTA AGGTAAATTT GACTGTGTGT TGAGTCTGAT GATGTTTGGG TTTCGCATGG
ATGCAGGGGA AGGGAACAGG GAGTTTCGGC AAGAGGAGGA ACAAGACCCA CACGCTCTGT GTGAGGTGCG GCCGTCGCAG
CTTTCACCTT CAAAAGAGTC GGTGTTCTGC GTGCGCCTTC CCCGCTGCGC GCACCAGAAA ATATAACTGG AGCGTTAAGG
CCATCAGGAG AAAGACTACC GGAACTGGAA GGATGAGGTA CCTGCGTCAC GTGCCTCGCA GATTTAAGAG CGGCTTTAGA
GAGGGTACCG AGGCAACACC AAGGAAGAGG GGGGCGGCTT CCACTACCTG AGCTTTGAAA GGAAACAATT TTTCTGGGTT
AGTGAATTAT AATAGTTTAG GGTTTTGTGC TATTTTTAAA TAACTTTTTT TTTCTGTCAT CTCAATTTTA TTTAATATGT
AATGGATTTT TATTTCGGCA TTTGATGGAT TTGATAGCCC AGTGTTCATT TGATCAATAT AGATTACACT TTGAGAGATA
ACCCCATTAA GAAATTTCAT GTATTTAATT TTAATTTTGT AATTTGTTGT TAATATTGGT TTGGTAAGGG TAAAACAACT
TAGACATTAG TTAGCTTAAC TACCTGA

[show][hide][copy]CDS

>Vigan.04G360900.01
ATGCAGGGGA AGGGAACAGG GAGTTTCGGC AAGAGGAGGA ACAAGACCCA CACGCTCTGT GTGAGGTGCG GCCGTCGCAG
CTTTCACCTT CAAAAGAGTC GGTGTTCTGC GTGCGCCTTC CCCGCTGCGC GCACCAGAAA ATATAACTGG AGCGTTAAGG
CCATCAGGAG AAAGACTACC GGAACTGGAA GGATGAGGTA CCTGCGTCAC GTGCCTCGCA GATTTAAGAG CGGCTTTAGA
GAGGGTACCG AGGCAACACC AAGGAAGAGG GGGGCGGCTT CCACTACCTG A

[show][hide][copy]PROTEIN

>Vigan.04G360900.01
MQGKGTGSFG KRRNKTHTLC VRCGRRSFHL QKSRCSACAF PAARTRKYNW SVKAIRRKTT GTGRMRYLRH VPRRFKSGFR
EGTEATPRKR GAASTT*