GBrowse Details

Vigan.04G361200.01

Basic Information:
Name: Vigan.04G361200.01
Multiple alignment
Variant Information
Position: Chr04:48130676..48133789 (+ strand)
Length: 3114
Functional Information:
Description: Similar to thylakoid lumenal 15 kDa protein 1, chloroplastic-like. [XP_004503171.1, Cicer arietinum]
InterPro: Pentapeptide repeat (IPR001646)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:2.88,2.37,25.82,55.20,5.99,23.65,5.22,12.60
Arabidopsis thaliana homolog: AT2G44920.2
Automatic updates:
Name: NM_001254030 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max thylakoid lumenal 15 kDa protein 1, chloroplastic-like (LOC100806792), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:48130676..48130725 (+ strand)
Length: 50
Type: five_prime_UTR
Position: Chr04:48130726..48130830 (+ strand)
Length: 105
Type: CDS
Position: Chr04:48130908..48131042 (+ strand)
Length: 135
Type: CDS
Position: Chr04:48131150..48131245 (+ strand)
Length: 96
Type: CDS
Position: Chr04:48131699..48131771 (+ strand)
Length: 73
Type: CDS
Position: Chr04:48131877..48131938 (+ strand)
Length: 62
Type: CDS
Position: Chr04:48132456..48132537 (+ strand)
Length: 82
Type: CDS
Position: Chr04:48133173..48133233 (+ strand)
Length: 61
Type: CDS
Position: Chr04:48133313..48133364 (+ strand)
Length: 52
Type: CDS
Position: Chr04:48133365..48133789 (+ strand)
Length: 425
Type: three_prime_UTR


>Vigan.04G361200.01
GCCAGATGGT ACCTATCACA GTTGCATCTG CGTGGGTGTG ACTGCAAGAA ATGGCTCTTG TTCTGAAGGT CTCCTTGTGT
TCCACTTCTA AGCCACATCT TTCTCTCTCA AACTCCAATT TCAAACCCAC TACTCTTTTT CATCTTCCTC TTCTGGGATT
CAACGCAAAG CAAACTCGCC AACCATCTCA GAAACTCGCA TTTCCATTGG GTGAGTCTGT GTCTGGTGCC ACCCTCGTGG
CTCTCCTCTC TGCCTCTTTC ATCTTTGTTG ATCCCGCACT TGCATTCAAG GGTGGAGGTC CATACGGGCA AGAAGTGACA
CGGGGACAAG ATCTCACTGG GAAGGACTTC AGTGGCAAGA CTCTGATCAA ACAAGACTTC AAAACGTCCA TACTGAGACA
AGCCAATTTT AAAGGTGCAA AGTTAATAGG TGCTAGCTTC TTTGATGCTG ATTTAACAGG TGCTGATCTT TCGGATGCTG
ATCTTCGAAA TGCTGATTTT TCCCTGGCTA ATGTGACGAA GGCAAACTTA AGCAATGCTA ACTTGGAAGG TGCACTTGCA
ACAGGAAATA CTTCTTTTAA GGGATCAATT ATTACAGGTG CTGACTTCAC GGATGTACCA CTAAGAGAAG ATCAACGTGA
ATACCTCTGC AAAGTTGCTG ATGGAGTGAA CCCAACAACT GGAAATGCTA CGCGTGATAC ATTGTTCTGC AATTAGTATT
CCATTGCTGA CATTGCTGAA GAAGACTCAC TCCAAGACCT TCAAAATATA TGCACTAAAT ATTTGTATCT CCATTATCCT
CTGTGCGGTC TGTGAAGTTG TCAGCTTGGC ATGTTGTTGG AATCTTGTAA TACAAAGCAA CAAAATCTAG ACTATTCCAA
ATTTCCATTC ACCATACAAT TGACAATAAG ATTGTGATGT AACGCTCTTA ACCATACCTA TTTGTTTCAC ATAGCTCAAC
TCCTTTCATC TATAGTATAA TAATACACTG AGGAATACAT GGAGTGGCCT TGAGCAAGAC TTAGGGTCAA TTTTGAATAA
ATTTCTTAAT CGAAAAAAAA AAAGTTAGTT TTTTGGTAAG CTAAAATTAG TTTTATTTAT GTGTACGATA ATTTATTTCA
TATAATTTTT CTGACTTTTT T

>Vigan.04G361200.01
ATGGCTCTTG TTCTGAAGGT CTCCTTGTGT TCCACTTCTA AGCCACATCT TTCTCTCTCA AACTCCAATT TCAAACCCAC
TACTCTTTTT CATCTTCCTC TTCTGGGATT CAACGCAAAG CAAACTCGCC AACCATCTCA GAAACTCGCA TTTCCATTGG
GTGAGTCTGT GTCTGGTGCC ACCCTCGTGG CTCTCCTCTC TGCCTCTTTC ATCTTTGTTG ATCCCGCACT TGCATTCAAG
GGTGGAGGTC CATACGGGCA AGAAGTGACA CGGGGACAAG ATCTCACTGG GAAGGACTTC AGTGGCAAGA CTCTGATCAA
ACAAGACTTC AAAACGTCCA TACTGAGACA AGCCAATTTT AAAGGTGCAA AGTTAATAGG TGCTAGCTTC TTTGATGCTG
ATTTAACAGG TGCTGATCTT TCGGATGCTG ATCTTCGAAA TGCTGATTTT TCCCTGGCTA ATGTGACGAA GGCAAACTTA
AGCAATGCTA ACTTGGAAGG TGCACTTGCA ACAGGAAATA CTTCTTTTAA GGGATCAATT ATTACAGGTG CTGACTTCAC
GGATGTACCA CTAAGAGAAG ATCAACGTGA ATACCTCTGC AAAGTTGCTG ATGGAGTGAA CCCAACAACT GGAAATGCTA
CGCGTGATAC ATTGTTCTGC AATTAG

>Vigan.04G361200.01
MALVLKVSLC STSKPHLSLS NSNFKPTTLF HLPLLGFNAK QTRQPSQKLA FPLGESVSGA TLVALLSASF IFVDPALAFK
GGGPYGQEVT RGQDLTGKDF SGKTLIKQDF KTSILRQANF KGAKLIGASF FDADLTGADL SDADLRNADF SLANVTKANL
SNANLEGALA TGNTSFKGSI ITGADFTDVP LREDQREYLC KVADGVNPTT GNATRDTLFC N*