GBrowse Details

Vigan.04G367200.01

Basic Information:
Name: Vigan.04G367200.01
Multiple alignment
Variant Information
Position: Chr04:48655062..48660574 (+ strand)
Length: 5513
Functional Information:
Description: Similar to Dehydroascorbate reductase. [Q4JR86, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: Glutathione S-transferase, N-terminal (IPR004045)
Glutathione S-transferase, C-terminal-like (IPR010987)
Thioredoxin-like fold (IPR012336)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.18,5.56,14.76,62.40,14.35,17.39,6.44,14.79
Arabidopsis thaliana homolog: AT5G16710.1
Automatic updates:
Name: KM818411 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DHAR class glutathione S-transferase (DHAR2) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: KM818412 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max DHAR class glutathione S-transferase (DHAR3) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001250000 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max dehydroascorbate reductase (DHAR3), mRNA.
PubMed ID: 30555496 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:48655062..48655175 (+ strand)
Length: 114
Type: five_prime_UTR
Position: Chr04:48655176..48655383 (+ strand)
Length: 208
Type: CDS
Position: Chr04:48656223..48656313 (+ strand)
Length: 91
Type: CDS
Position: Chr04:48656458..48656601 (+ strand)
Length: 144
Type: CDS
Position: Chr04:48656770..48656887 (+ strand)
Length: 118
Type: CDS
Position: Chr04:48659441..48659581 (+ strand)
Length: 141
Type: CDS
Position: Chr04:48660147..48660233 (+ strand)
Length: 87
Type: CDS
Position: Chr04:48660234..48660574 (+ strand)
Length: 341
Type: three_prime_UTR


>Vigan.04G367200.01
TCAAGCATAA AACCATGATG TTGTGAAATG TTGGATAGTG CCACGTAAAC ACCACCGGAA CCAAAACCAC AACGAAACAT
CATCGTCAAC ATCGGGTTCG GAGTAGAAGC TGCAATGTCC ACTGCGAGAG TTCAAGTTTC GGCGTGTGCG CTTTCCGCTG
CCGTCAACAA CCTCCGTCTC CGGCCAACCG CCGTCGTTTC CTTCACCAAC CATTTCAGGA AGAAGTCTCT GAGGGTGGTG
TCAATGTCGT CCGTTCCCCC TTCCCAACCC TTCGAAATCG CCGTTAAAGC TTCCGTCACT ACACCCAATA GGCTCGGCGA
CTGTCCCTTT TGCCAAAGGG TATTACTAAC ACTGGAAGAA AAACATCTAC CTTATGAACC CAAGTTGGTG GATTTCACCA
ACAGACCAGA ATGGTTCCTT AAAGCCAATC CTGATGGTAA AGTTCCTGTC ATAAAGTTTG ATGAGAAGTG GGTTCCGGAT
TCAGATGTTA TCACTCAAAC ATTGGAAGAG AAGTATCCTA TCCCACCATT GGTGACCCCA CCCGAAAAGG CCACAGTAGG
TTCAAAGATA TTTTCTACAT TTATTGGATT TCTCAAGAGC AAGGATCCCA ATGATGGAAC AGAACAAGCA TTACTAAGTG
AACTGAGCTC TTTCAATGAT TACATAAAGG AAAATGGCCC TTATATTAAC GGTAATGAGA TATGTGCAGC TGACCTATCA
CTTGGACCAA AGCTATACCA TTTGGAGATT GCTCTGGGGC ATTATAAGAA ATGGACAGTA CCTGATTCAC TTACCTCTTT
GAAGGCTTAC ACGAAGGCGA TTTTCTCGAG GGAATCGTTC ATTAAAACAA GTGCACAACC GCAGGATGTC ATTGAAGGTT
GGCGTCCTAA AGTAGAAGGC TAATAATATC CACTGGTCAC ACTCATTTTC ATTACACTCT CACGACTATA CCCCCGAGGA
ACAATGTATG AAGAATTGAA AGACCTGTAT CGTTTTGTAT TATAATCTTA CTCATTCACT ATGAATTATG GAATAAATAT
TTATTAACAA TAGTTGGTCT CAGATTGTAA CATGTTTGAT ATGAGTCCTG AATGAAAATA GTTGCATTAA GGCGAAACAT
CTTGAGTGTA AAAACAATGA AAGGAGTCTC ATAAAAAAAC CAAAAAGATG GAAGCAAATT TCAGAATTCT GATGAGTAAT
TTGTCTCTTG AGAGATTGAG ACGAAACATT GCTTTCAATT TTGG

>Vigan.04G367200.01
ATGTCCACTG CGAGAGTTCA AGTTTCGGCG TGTGCGCTTT CCGCTGCCGT CAACAACCTC CGTCTCCGGC CAACCGCCGT
CGTTTCCTTC ACCAACCATT TCAGGAAGAA GTCTCTGAGG GTGGTGTCAA TGTCGTCCGT TCCCCCTTCC CAACCCTTCG
AAATCGCCGT TAAAGCTTCC GTCACTACAC CCAATAGGCT CGGCGACTGT CCCTTTTGCC AAAGGGTATT ACTAACACTG
GAAGAAAAAC ATCTACCTTA TGAACCCAAG TTGGTGGATT TCACCAACAG ACCAGAATGG TTCCTTAAAG CCAATCCTGA
TGGTAAAGTT CCTGTCATAA AGTTTGATGA GAAGTGGGTT CCGGATTCAG ATGTTATCAC TCAAACATTG GAAGAGAAGT
ATCCTATCCC ACCATTGGTG ACCCCACCCG AAAAGGCCAC AGTAGGTTCA AAGATATTTT CTACATTTAT TGGATTTCTC
AAGAGCAAGG ATCCCAATGA TGGAACAGAA CAAGCATTAC TAAGTGAACT GAGCTCTTTC AATGATTACA TAAAGGAAAA
TGGCCCTTAT ATTAACGGTA ATGAGATATG TGCAGCTGAC CTATCACTTG GACCAAAGCT ATACCATTTG GAGATTGCTC
TGGGGCATTA TAAGAAATGG ACAGTACCTG ATTCACTTAC CTCTTTGAAG GCTTACACGA AGGCGATTTT CTCGAGGGAA
TCGTTCATTA AAACAAGTGC ACAACCGCAG GATGTCATTG AAGGTTGGCG TCCTAAAGTA GAAGGCTAA

>Vigan.04G367200.01
MSTARVQVSA CALSAAVNNL RLRPTAVVSF TNHFRKKSLR VVSMSSVPPS QPFEIAVKAS VTTPNRLGDC PFCQRVLLTL
EEKHLPYEPK LVDFTNRPEW FLKANPDGKV PVIKFDEKWV PDSDVITQTL EEKYPIPPLV TPPEKATVGS KIFSTFIGFL
KSKDPNDGTE QALLSELSSF NDYIKENGPY INGNEICAAD LSLGPKLYHL EIALGHYKKW TVPDSLTSLK AYTKAIFSRE
SFIKTSAQPQ DVIEGWRPKV EG*