GBrowse Details

Vigan.04G368500.01

Basic Information:
Name: Vigan.04G368500.01
Multiple alignment
Variant Information
Position: Chr04:48813554..48817538 (+ strand)
Length: 3985
Functional Information:
Description: Similar to Glutamine synthetase nodule isozyme. [P32289, Vigna aconitifolia]
GO: Biological Process: glutamine biosynthetic process (GO:0006542)
Biological Process: nitrogen compound metabolic process (GO:0006807)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: glutamate-ammonia ligase activity (GO:0004356)
InterPro: Glutamine synthetase, catalytic domain (IPR008146)
Glutamine synthetase, beta-Grasp (IPR008147)
Glutamine synthetase/guanido kinase, catalytic domain (IPR014746)
Glutamine synthetase, N-terminal conserved site (IPR027302)
Glutamine synthetase, glycine-rich site (IPR027303)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1133.36,708.26,249.08,154.40,1009.27,506.39,2989.84,196.27
Arabidopsis thaliana homolog: AT1G48470.1, AT1G66200.3, AT3G17820.1, AT5G16570.1, AT5G35630.1, AT5G37600.1
Automatic updates:
Name: NM_001255403 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cytosolic glutamine synthetase beta2 (GS1beta2), mRNA.
PubMed ID: 19097025 NCBI(pubmed)
11788764 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:48813554..48813897 (+ strand)
Length: 344
Type: five_prime_UTR
Position: Chr04:48813898..48813971 (+ strand)
Length: 74
Type: CDS
Position: Chr04:48814721..48814760 (+ strand)
Length: 40
Type: CDS
Position: Chr04:48814854..48814957 (+ strand)
Length: 104
Type: CDS
Position: Chr04:48815082..48815130 (+ strand)
Length: 49
Type: CDS
Position: Chr04:48815369..48815475 (+ strand)
Length: 107
Type: CDS
Position: Chr04:48815564..48815651 (+ strand)
Length: 88
Type: CDS
Position: Chr04:48815965..48816093 (+ strand)
Length: 129
Type: CDS
Position: Chr04:48816228..48816302 (+ strand)
Length: 75
Type: CDS
Position: Chr04:48816384..48816437 (+ strand)
Length: 54
Type: CDS
Position: Chr04:48816609..48816646 (+ strand)
Length: 38
Type: CDS
Position: Chr04:48816786..48816945 (+ strand)
Length: 160
Type: CDS
Position: Chr04:48817230..48817382 (+ strand)
Length: 153
Type: CDS
Position: Chr04:48817383..48817538 (+ strand)
Length: 156
Type: three_prime_UTR


>Vigan.04G368500.01
AATCTATAAT TTTAATGAGT ATCTTGATTA TGTCATTTGA AAAATTGTTT TTTTACCAAA TAAAAAATAT ATTTTTCATG
AATCTAAAAG AAATAAGCAT TAAAAAAGTG AAGGTTTAGG GTAGAAATGA ATTAAAAAAT CATATGTGAA GTGAAAATTA
TGTATTGAAT CTGAGGAAGT ACAATGTGTA GGGGAGCAAG AACAACCCAC TATAAAATCC CACACACCCT ATTCTTCTGT
TCACGTACCT GTTGAATCTC AGTATTCAGA GAAAGGAGAA AGAGAGATCT TTTTGTGCTG TGAAGAAGGG TCTTTCCTTG
TTTCTTCGTG TCTTCACTTT TACCATGTCG CTGCTATCAG ATCTCATCAA CCTCAACCTA TCCGACGACA CCGAGAAGGT
CATCGCAGAG TACATATGGA TCGGTGGATC AGGACTGGAT CTAAGGAGCA AAGCAAGGAC TCTACCAGGA CCAGTTAGCG
ACCCTTCAAA GCTGCCTAAA TGGAACTATG ATGGTTCCAG CACAGGTCAA GCCCCTGGAG AAGACAGTGA AGTGATTATA
TACCCACAAG CTATTTTCAA GGATCCATTC AGAAGGGGTA ACAATATCTT GGTTATGTGT GATGCTTACA CTCCAGCTGG
AGAACCCATT CCCACTAACA AGAGGCACAA TGCTGCCAAG ATATTCAGCC ACCCTGATGT TGTTGCAGAA GAGCCCTGGT
ACGGTATTGA GCAGGAATAC ACCTTATTGC AGAAGGATGT CAACTGGCCA CTTGGGTGGC CTGTTGGCGG TTTCCCTGGA
CCTCAAGGAC CTTACTATTG TGGTGCTGGT GCTGATAAGG CTTTTGGGCG TGACATTGTT GACGCACATT ACAAAGCCTG
TCTTTATGCT GGCATCAACA TCAGTGGAAT TAATGGAGAG GTTATGCCGG GTCAGTGGGA ATTCCAAGTT GGACCTGCGG
TTGGGATATC AGCTGGTGAC GAGTTGTGGG TAGCTCGTTA CATCTTGGAG AGGATCACTG AGATTGCTGG TGTGGTGCTT
TCCTTTGACC CTAAGCCAAT CAAGGGTGAT TGGAATGGTG CCGGTGCTCA CACCAACTAC AGCACGAAGA CAATGAGAAA
CGATGGTGGC TATGAAGTAA TCAAATCAGC AATCGAAAAA TTGGGGAAGA AGCACAAGGA GCATATCGCT GCTTATGGAG
AAGGCAACGA ACGCCGTCTG ACAGGACGAC ACGAAACTGC AGACATCAAC ACCTTCTTAT GGGGAGTTGC AAACCGTGGA
GCTTCTATTA GAGTTGGGAG GGACACGGAA AAAGCAGGGA AGGGATACTT TGAGGACAGA AGGCCAGCTT CTAACATGGA
CCCGTATGTT GTTACTTCCA TGATTGCAGA CACAACCATT CTGTGGAAGC CATGAGCAAC AACACCTGCA CTTTGTCTTT
TCCTTTGGGA TGGAGAAAGG AACATTAAGT AGGATTTGGT CCTTTATTTC ACACCTCTTA CTTTTTAGGA TTTGGATTTC
TGGTAATTGT TGTGGTTCGC TTGCTTGGGG CCTTGCTGGT TGGTACAACT A

>Vigan.04G368500.01
ATGTCGCTGC TATCAGATCT CATCAACCTC AACCTATCCG ACGACACCGA GAAGGTCATC GCAGAGTACA TATGGATCGG
TGGATCAGGA CTGGATCTAA GGAGCAAAGC AAGGACTCTA CCAGGACCAG TTAGCGACCC TTCAAAGCTG CCTAAATGGA
ACTATGATGG TTCCAGCACA GGTCAAGCCC CTGGAGAAGA CAGTGAAGTG ATTATATACC CACAAGCTAT TTTCAAGGAT
CCATTCAGAA GGGGTAACAA TATCTTGGTT ATGTGTGATG CTTACACTCC AGCTGGAGAA CCCATTCCCA CTAACAAGAG
GCACAATGCT GCCAAGATAT TCAGCCACCC TGATGTTGTT GCAGAAGAGC CCTGGTACGG TATTGAGCAG GAATACACCT
TATTGCAGAA GGATGTCAAC TGGCCACTTG GGTGGCCTGT TGGCGGTTTC CCTGGACCTC AAGGACCTTA CTATTGTGGT
GCTGGTGCTG ATAAGGCTTT TGGGCGTGAC ATTGTTGACG CACATTACAA AGCCTGTCTT TATGCTGGCA TCAACATCAG
TGGAATTAAT GGAGAGGTTA TGCCGGGTCA GTGGGAATTC CAAGTTGGAC CTGCGGTTGG GATATCAGCT GGTGACGAGT
TGTGGGTAGC TCGTTACATC TTGGAGAGGA TCACTGAGAT TGCTGGTGTG GTGCTTTCCT TTGACCCTAA GCCAATCAAG
GGTGATTGGA ATGGTGCCGG TGCTCACACC AACTACAGCA CGAAGACAAT GAGAAACGAT GGTGGCTATG AAGTAATCAA
ATCAGCAATC GAAAAATTGG GGAAGAAGCA CAAGGAGCAT ATCGCTGCTT ATGGAGAAGG CAACGAACGC CGTCTGACAG
GACGACACGA AACTGCAGAC ATCAACACCT TCTTATGGGG AGTTGCAAAC CGTGGAGCTT CTATTAGAGT TGGGAGGGAC
ACGGAAAAAG CAGGGAAGGG ATACTTTGAG GACAGAAGGC CAGCTTCTAA CATGGACCCG TATGTTGTTA CTTCCATGAT
TGCAGACACA ACCATTCTGT GGAAGCCATG A

>Vigan.04G368500.01
MSLLSDLINL NLSDDTEKVI AEYIWIGGSG LDLRSKARTL PGPVSDPSKL PKWNYDGSST GQAPGEDSEV IIYPQAIFKD
PFRRGNNILV MCDAYTPAGE PIPTNKRHNA AKIFSHPDVV AEEPWYGIEQ EYTLLQKDVN WPLGWPVGGF PGPQGPYYCG
AGADKAFGRD IVDAHYKACL YAGINISGIN GEVMPGQWEF QVGPAVGISA GDELWVARYI LERITEIAGV VLSFDPKPIK
GDWNGAGAHT NYSTKTMRND GGYEVIKSAI EKLGKKHKEH IAAYGEGNER RLTGRHETAD INTFLWGVAN RGASIRVGRD
TEKAGKGYFE DRRPASNMDP YVVTSMIADT TILWKP*