VIGGS:GBrowse

Vigan.04G373300.01

Basic Information:

Name:	Vigan.04G373300.01 Multiple alignment Variant Information
Position:	Chr04:49181528..49185316 (- strand)
Length:	3789

Functional Information:

Description:	Similar to Uncharacterized protein. [E3W9C1, Glycine max]
GO:	Biological Process: glycerol ether metabolic process (GO:0006662)
	Biological Process: cell redox homeostasis (GO:0045454)
	Cellular Component: endoplasmic reticulum (GO:0005783)
	Molecular Function: protein disulfide oxidoreductase activity (GO:0015035)
	Molecular Function: isomerase activity (GO:0016853)
InterPro:	Thioredoxin (IPR005746)
	Disulphide isomerase (IPR005788)
	Endoplasmic reticulum, protein ERp29, C-terminal (IPR011679)
	Thioredoxin-like fold (IPR012336)
	Thioredoxin domain (IPR013766)
	Thioredoxin, conserved site (IPR017937)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:42.80,37.56,18.16,3.10,28.31,29.75,16.07,10.97
Arabidopsis thaliana homolog:	AT2G47470.1

Automatic updates:

Name:	NM_001249384 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max protein disulfide isomerase-like protein (PDIS-2), mRNA.
PubMed ID:	17181539 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:49181528..49181749 (- strand)
Length:	222
Type:	three_prime_UTR

Position:	Chr04:49181750..49181815 (- strand)
Length:	66
Type:	CDS

Position:	Chr04:49182373..49182472 (- strand)
Length:	100
Type:	CDS

Position:	Chr04:49182637..49182761 (- strand)
Length:	125
Type:	CDS

Position:	Chr04:49182841..49182997 (- strand)
Length:	157
Type:	CDS

Position:	Chr04:49183095..49183186 (- strand)
Length:	92
Type:	CDS

Position:	Chr04:49183313..49183340 (- strand)
Length:	28
Type:	CDS

Position:	Chr04:49183452..49183569 (- strand)
Length:	118
Type:	CDS

Position:	Chr04:49184463..49184518 (- strand)
Length:	56
Type:	CDS

Position:	Chr04:49184640..49184737 (- strand)
Length:	98
Type:	CDS

Position:	Chr04:49184837..49184921 (- strand)
Length:	85
Type:	CDS

Position:	Chr04:49185017..49185180 (- strand)
Length:	164
Type:	CDS

Position:	Chr04:49185181..49185316 (- strand)
Length:	136
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G373300.01
AGAAAAGCAA ATCCGAGGGG AGAAGAGGGG AAAATGAAAA GTTGAGAGTA GTGACAGAGA GGGTAGCGAG AACTTTCACA
TAGTTACGAA ACACATAAAA ACATCATCAG AGATCGACGA GGAAACTGAG CGAACAATGT GGAGCTCCAC TAAGAGGATG
ACGGTGGCCG TTGCCGCCGT AACGCTCATG ATTTTTCTCT CATCGGCTTC AGCCGACGAC GTCGTTGCAC TCACCCAGAA
CACCTTCGAC AACGAGGTTG GCAAGGATCG TGCCGCTCTC GTCGAGTTTT ACGCCCCTTG GTGTGGACAT TGTAAAAAGC
TTGCCCCGGA GTACGAACAA CTCGGAACGA GTTTCAGGAA AACGAAGTCG GTTTTGATTG CGAAGGTGGA TTGTGATGAA
CATAAAAGCG TTTGCAGTAA ATACGGGGTT TCTGGTTACC CTACCATTCA ATGGTTTCCC AAGGGATCTC TACAGCCAAA
AAAGTATGAA GGTGCACGGA CTGCGGAAGC CCTTGCTGCG TTTGTGAACC TTGAAGCAGG TACTAATGTG AAGATAGCTT
CTGCCCCATC CAGCGTGGTA ATTCTCTCCC CAGATAACTT TGATGAGGTT GTCTTGGATG AAACAAAAGA TGTTCTGGTG
GAATTCTATG CACCATGGTG TGGTCACTGC AAGGCTCTTG CCACTACTTA TGAAAAGGTT GCTGCAGCAT TTAACCTGGA
TGAAGAAGTA GTTATAGCCA ATGTTGATGC TGACAAGTAT AAGAATTTGG CTGAGAGATA TGGTGTTACT GGCTACCCTA
CGCTGAAGTT TTTCCCTAAG AGCAATAAAG CTGGTGAAGA TTATAGTGGT GGTCGTAGTT TGGATGACTT TGTAGCCTTC
ATCAATGAGA AATGTGGTAC ATACCGTGAT GGGAAAGGAC AGCTTAGTTC TAAAGCTGGT ATTGTAGAAT CTCTGGATGG
CTTGGTGAAG GAGTTTGTGA GTGCTGATGA TAATGACAAG AAGGCAGTAT ATTCCCGGCT TGAGGAGGAA GTTAAGAAGC
TCAAGGGTTC TGCTGCCAGA TATGGCAGCC TCTACTTAAA ACTTGCCAAG AAGAGTATGG AAAAGGGTAC GGACTATGCA
AAGAATGAAA TTCTTCGTCT AGACCGCATG CTTGAGAAGT CAATCAGCCC AGCAAAAGCA GATGAATTCA CTCTGAAGAA
GAACATCTTA TCAACGTTTG CTTGATCTTA CTGTGATAGA AGAGTAGTTT ATTTCAGTTA TGCAGGGAGA CATAATTTGT
AATTCCCCAG TTTCTAGGTG TTATCACCCT AGTTTTCTAG ATGTCCCACT TCTTATAAAT AGTATTTCAA GAACATTTTT
GTACTGATCA CTTACCGTGT CTAAAAATTA AAACAGAAGT ACAATTTTCA TTAAGAAATC ATCATACTCT ATATGTTGCT
CAGGCTA

[show][hide][copy]CDS

>Vigan.04G373300.01
ATGTGGAGCT CCACTAAGAG GATGACGGTG GCCGTTGCCG CCGTAACGCT CATGATTTTT CTCTCATCGG CTTCAGCCGA
CGACGTCGTT GCACTCACCC AGAACACCTT CGACAACGAG GTTGGCAAGG ATCGTGCCGC TCTCGTCGAG TTTTACGCCC
CTTGGTGTGG ACATTGTAAA AAGCTTGCCC CGGAGTACGA ACAACTCGGA ACGAGTTTCA GGAAAACGAA GTCGGTTTTG
ATTGCGAAGG TGGATTGTGA TGAACATAAA AGCGTTTGCA GTAAATACGG GGTTTCTGGT TACCCTACCA TTCAATGGTT
TCCCAAGGGA TCTCTACAGC CAAAAAAGTA TGAAGGTGCA CGGACTGCGG AAGCCCTTGC TGCGTTTGTG AACCTTGAAG
CAGGTACTAA TGTGAAGATA GCTTCTGCCC CATCCAGCGT GGTAATTCTC TCCCCAGATA ACTTTGATGA GGTTGTCTTG
GATGAAACAA AAGATGTTCT GGTGGAATTC TATGCACCAT GGTGTGGTCA CTGCAAGGCT CTTGCCACTA CTTATGAAAA
GGTTGCTGCA GCATTTAACC TGGATGAAGA AGTAGTTATA GCCAATGTTG ATGCTGACAA GTATAAGAAT TTGGCTGAGA
GATATGGTGT TACTGGCTAC CCTACGCTGA AGTTTTTCCC TAAGAGCAAT AAAGCTGGTG AAGATTATAG TGGTGGTCGT
AGTTTGGATG ACTTTGTAGC CTTCATCAAT GAGAAATGTG GTACATACCG TGATGGGAAA GGACAGCTTA GTTCTAAAGC
TGGTATTGTA GAATCTCTGG ATGGCTTGGT GAAGGAGTTT GTGAGTGCTG ATGATAATGA CAAGAAGGCA GTATATTCCC
GGCTTGAGGA GGAAGTTAAG AAGCTCAAGG GTTCTGCTGC CAGATATGGC AGCCTCTACT TAAAACTTGC CAAGAAGAGT
ATGGAAAAGG GTACGGACTA TGCAAAGAAT GAAATTCTTC GTCTAGACCG CATGCTTGAG AAGTCAATCA GCCCAGCAAA
AGCAGATGAA TTCACTCTGA AGAAGAACAT CTTATCAACG TTTGCTTGA

[show][hide][copy]PROTEIN

>Vigan.04G373300.01
MWSSTKRMTV AVAAVTLMIF LSSASADDVV ALTQNTFDNE VGKDRAALVE FYAPWCGHCK KLAPEYEQLG TSFRKTKSVL
IAKVDCDEHK SVCSKYGVSG YPTIQWFPKG SLQPKKYEGA RTAEALAAFV NLEAGTNVKI ASAPSSVVIL SPDNFDEVVL
DETKDVLVEF YAPWCGHCKA LATTYEKVAA AFNLDEEVVI ANVDADKYKN LAERYGVTGY PTLKFFPKSN KAGEDYSGGR
SLDDFVAFIN EKCGTYRDGK GQLSSKAGIV ESLDGLVKEF VSADDNDKKA VYSRLEEEVK KLKGSAARYG SLYLKLAKKS
MEKGTDYAKN EILRLDRMLE KSISPAKADE FTLKKNILST FA*