GBrowse Details

Vigan.04G373400.01

Basic Information:
Name: Vigan.04G373400.01
Multiple alignment
Variant Information
Position: Chr04:49191103..49194300 (+ strand)
Length: 3198
Functional Information:
Description: Similar to zinc finger matrin-type protein 2. [XP_008453724.1, Cucumis melo]
GO: Molecular Function: nucleic acid binding (GO:0003676)
Molecular Function: zinc ion binding (GO:0008270)
InterPro: Zinc finger, U1-type (IPR003604)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:15.38,11.73,16.21,19.60,20.79,11.64,12.77,16.73
Arabidopsis thaliana homolog: AT3G05760.1
Automatic updates:
Name: NM_001251092 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100527057 (LOC100527057), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49191103..49191215 (+ strand)
Length: 113
Type: five_prime_UTR
Position: Chr04:49191216..49191236 (+ strand)
Length: 21
Type: CDS
Position: Chr04:49191345..49191425 (+ strand)
Length: 81
Type: CDS
Position: Chr04:49191524..49191551 (+ strand)
Length: 28
Type: CDS
Position: Chr04:49191626..49191708 (+ strand)
Length: 83
Type: CDS
Position: Chr04:49191900..49191932 (+ strand)
Length: 33
Type: CDS
Position: Chr04:49192675..49192753 (+ strand)
Length: 79
Type: CDS
Position: Chr04:49192849..49192901 (+ strand)
Length: 53
Type: CDS
Position: Chr04:49193027..49193087 (+ strand)
Length: 61
Type: CDS
Position: Chr04:49193456..49193535 (+ strand)
Length: 80
Type: CDS
Position: Chr04:49193734..49193820 (+ strand)
Length: 87
Type: CDS
Position: Chr04:49193821..49194300 (+ strand)
Length: 480
Type: three_prime_UTR


>Vigan.04G373400.01
AACTAGGGTT TCATATCATC GTAATGTGCC CTTTATTTCA ATCAATTATC AAATAGCTTC GGTGATCATT GTAACTGCCT
CTGCATTTGG TTTTCATTTA TTTGCTTGTA TCAATGTCTA ACACCAGCAA CAATGTCGTT GGAGTTGACA ACACATTCAG
AAGAAAATTT GATCGAGAAG AGTACCTGGA ACGAGCACGG GAGCGCGAGA GACAGGAGGA GGAGGGTCGA TCGAAACCTA
AAGCTAAAGG TCCTCCCGTG CAGAGGAAGC CCTTGAAGCA CAGAGATTAT GAAGTGGACC TGGAATCTCG CTTGGGCAAG
ACTCAGGTTG TTACACCGGT TGCACCACTA AGTCAGCAGG CTGGATACTA CTGCTCAGTT TGTGAGTGTG TAGTTAAGGA
CTCTGCAAAC TACTTGGATC ATATTAATGG AAAGAAACAT CAAAGAGCTT TGGGCATGTC TATGCGAGTA GAACGTGCTT
CTCTCAAACA GGTCCAGGAA AGATTTGAAG TTCTTAAGAA ACGGAAAGAT GTTGGTAGCT TCACAGAGCA AGATCTTGAT
GAACGGATTT TAAAACAACA ACAAGAAGAG GAAGAAAAAA AACGTCTACG AAGAGAAAAG AAAAAGGAAA AGAAGGAAAA
AGCAGTGGAA GAACCTGAAA TTGATCCTGA TGTTGCTGCC ATGATGGGGT TTGGAGGTTT CCGGTCATCC AAGAAGTGAT
AACATTCTGC ATGCGGGATG AATTGTATGA GATTTGGAAT ATTTATTTCA CATTGGTAAG CTGAATCCTA TATCTTCCAT
GCTCAATCTG AGAGGCATAA GCGGAATAAT GGAACAGTGG ATCCCAAACA GTAGTATGCT TGGTGATATT CGATCATGTG
CTTCGGTTGA TTCATGTATA TTTCTTCTGA TGGCTAACCT GATGTATTAT ACAGACAGAG CTCGGTAATT GTCTTTTCCT
CTATGTTCGA ACCATAGTGG GGGAGTCAAC CGCCGTAGCT AACGAAATTA AATATAGACA TTCGATTCAA TCTGGGTTGT
TACTGTTTTT TGGGTGTAGT TGTTTTTATT GAAAATAGAA ATATAACTAC AATTTTCTGC ATTATCTTTG GTTATACAAT
ACTTGTTGGC CAGGATACTC GAACCTGCAT GCACTTGCCA TGGTCATGCG TTCTAATTCC ATTGACTTTT GGTACACAA

>Vigan.04G373400.01
ATGTCTAACA CCAGCAACAA TGTCGTTGGA GTTGACAACA CATTCAGAAG AAAATTTGAT CGAGAAGAGT ACCTGGAACG
AGCACGGGAG CGCGAGAGAC AGGAGGAGGA GGGTCGATCG AAACCTAAAG CTAAAGGTCC TCCCGTGCAG AGGAAGCCCT
TGAAGCACAG AGATTATGAA GTGGACCTGG AATCTCGCTT GGGCAAGACT CAGGTTGTTA CACCGGTTGC ACCACTAAGT
CAGCAGGCTG GATACTACTG CTCAGTTTGT GAGTGTGTAG TTAAGGACTC TGCAAACTAC TTGGATCATA TTAATGGAAA
GAAACATCAA AGAGCTTTGG GCATGTCTAT GCGAGTAGAA CGTGCTTCTC TCAAACAGGT CCAGGAAAGA TTTGAAGTTC
TTAAGAAACG GAAAGATGTT GGTAGCTTCA CAGAGCAAGA TCTTGATGAA CGGATTTTAA AACAACAACA AGAAGAGGAA
GAAAAAAAAC GTCTACGAAG AGAAAAGAAA AAGGAAAAGA AGGAAAAAGC AGTGGAAGAA CCTGAAATTG ATCCTGATGT
TGCTGCCATG ATGGGGTTTG GAGGTTTCCG GTCATCCAAG AAGTGA

>Vigan.04G373400.01
MSNTSNNVVG VDNTFRRKFD REEYLERARE RERQEEEGRS KPKAKGPPVQ RKPLKHRDYE VDLESRLGKT QVVTPVAPLS
QQAGYYCSVC ECVVKDSANY LDHINGKKHQ RALGMSMRVE RASLKQVQER FEVLKKRKDV GSFTEQDLDE RILKQQQEEE
EKKRLRREKK KEKKEKAVEE PEIDPDVAAM MGFGGFRSSK K*