GBrowse Details

Vigan.04G373500.01

Basic Information:
Name: Vigan.04G373500.01
Multiple alignment
Variant Information
Position: Chr04:49196079..49198483 (- strand)
Length: 2405
Functional Information:
Description: Similar to GTP-binding protein SAR1A-like. [XP_004494541.1, Cicer arietinum]
GO: Biological Process: intracellular protein transport (GO:0006886)
Biological Process: small GTPase mediated signal transduction (GO:0007264)
Cellular Component: intracellular (GO:0005622)
Molecular Function: GTP binding (GO:0005525)
InterPro: Small GTP-binding protein domain (IPR005225)
Small GTPase superfamily, SAR1-type (IPR006687)
Small GTPase superfamily, ARF/SAR type (IPR006689)
Small GTPase superfamily, ARF type (IPR024156)
P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:81.43,32.40,58.92,57.74,63.25,101.92,63.02,50.65
Automatic updates:
Name: NM_001251331 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305632 (LOC100305632), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001251608 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max ARF-like GTPase family protein Sar1c-like protein (LOC100305650), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49196079..49196444 (- strand)
Length: 366
Type: three_prime_UTR
Position: Chr04:49196445..49196765 (- strand)
Length: 321
Type: CDS
Position: Chr04:49197530..49197661 (- strand)
Length: 132
Type: CDS
Position: Chr04:49198209..49198337 (- strand)
Length: 129
Type: CDS
Position: Chr04:49198338..49198483 (- strand)
Length: 146
Type: five_prime_UTR


>Vigan.04G373500.01
ATCGAATGTA ACCAACTACT TTCTCTCTCC TCTGGTTTTG GGGTTAGGTC TTTCTACTCA AAACAAAACT TCAATTTCTG
TTTCAGTTGG CGAAGATCGA TATTTATCGG TACTAGTAAT AGAGGTAATT CGTAGATAAA AAAGCAATGT TTTTGGTCGA
TTGGTTTTAT GGGATTCTAG CGTCGCTTGG GCTGTGGCAG AAGGAGGCCA AGATCTTATT CCTAGGTCTC GATAACGCTG
GCAAAACCAC CCTGCTCCAC ATGCTCAAAG ACGAGAGATT AGTCCAGCAT CAGCCCACCC AGTATCCTAC GTCAGAAGAG
TTGAGTATTG GAAAGATCAA GTTCAAAGCT TTTGATCTAG GGGGTCATCA GATTGCTCGA AGAGTGTGGA AAGATTACTA
TGCTCAGGTA GATGCAGTGG TGTACTTGGT TGATGCGTAT GACAAGGAAA GATTTGCTGA GTCAAAAAAA GAGCTGGATG
CTCTACTCTC TGATGAATCT TTAGCCAATG TCCCTTTCCT TGTCCTTGGG AACAAAATTG ATATTCCATA TGCTGCCTCA
GAAGAAGAGC TGCGTTACCA TTTGGGCCTG ACTAACTTCA CCACAGGCAA AGGTAAGGTA AATTTGGCCG ACTCAAATGT
CCGTGCCATG GAGGTGTTCA TGTGCAGTAT TGTGAAGAAA ATGGGTTATG GGGAAGGTTT CAAATGGCTT TCTCAGTACA
TCAAATAGTC CATGACCAAG AGATAGTCTG GTATCTCATT TCTAGAAGTT TGTTTCTGTA GTTATGATTT GGAGGTGTTG
ATGGTACGAA ATTGCAGTAT ATTTCAATTT TATTTAAATA TAAAATGACT GAACCTATTT CTCACTTCCT TTCTCCGTTG
TGTGCTGATA AAATTTCAGA TAATCTGTGG TGAATGATGA ATTTGGTCCA TGATTTTTAC ACCCGCTTAT TCGTCTTTCC
ACTTTACTTT TGTAATTCCT ATTCTACTCC TCTCTTACTG TCTCTTCAGA CAGAATTAGG TATATTTGCG AAGGCCCGTA
GGCAGCCCGT TTAGCCCACA TGGGTCTCTA GATGGAATCA ACTTTTTCAC ACCC

>Vigan.04G373500.01
ATGTTTTTGG TCGATTGGTT TTATGGGATT CTAGCGTCGC TTGGGCTGTG GCAGAAGGAG GCCAAGATCT TATTCCTAGG
TCTCGATAAC GCTGGCAAAA CCACCCTGCT CCACATGCTC AAAGACGAGA GATTAGTCCA GCATCAGCCC ACCCAGTATC
CTACGTCAGA AGAGTTGAGT ATTGGAAAGA TCAAGTTCAA AGCTTTTGAT CTAGGGGGTC ATCAGATTGC TCGAAGAGTG
TGGAAAGATT ACTATGCTCA GGTAGATGCA GTGGTGTACT TGGTTGATGC GTATGACAAG GAAAGATTTG CTGAGTCAAA
AAAAGAGCTG GATGCTCTAC TCTCTGATGA ATCTTTAGCC AATGTCCCTT TCCTTGTCCT TGGGAACAAA ATTGATATTC
CATATGCTGC CTCAGAAGAA GAGCTGCGTT ACCATTTGGG CCTGACTAAC TTCACCACAG GCAAAGGTAA GGTAAATTTG
GCCGACTCAA ATGTCCGTGC CATGGAGGTG TTCATGTGCA GTATTGTGAA GAAAATGGGT TATGGGGAAG GTTTCAAATG
GCTTTCTCAG TACATCAAAT AG

>Vigan.04G373500.01
MFLVDWFYGI LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQYPTSEELS IGKIKFKAFD LGGHQIARRV
WKDYYAQVDA VVYLVDAYDK ERFAESKKEL DALLSDESLA NVPFLVLGNK IDIPYAASEE ELRYHLGLTN FTTGKGKVNL
ADSNVRAMEV FMCSIVKKMG YGEGFKWLSQ YIK*