GBrowse Details

Vigan.04G375700.01

Basic Information:
Name: Vigan.04G375700.01
Multiple alignment
Variant Information
Position: Chr04:49377749..49381910 (+ strand)
Length: 4162
Functional Information:
Description: Similar to Uncharacterized protein. [I1NBQ5, Glycine max]
GO: Biological Process: cellular metabolic process (GO:0044237)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: coenzyme binding (GO:0050662)
InterPro: NAD-dependent epimerase/dehydratase (IPR001509)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:7.47,19.30,29.63,578.52,1.48,34.33,1.04,34.50
Arabidopsis thaliana homolog: AT1G09340.1
Automatic updates:
Name: NM_001255089 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100791076 (LOC100791076), mRNA; nuclear gene for chloroplast product.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49377749..49378125 (+ strand)
Length: 377
Type: five_prime_UTR
Position: Chr04:49378126..49378227 (+ strand)
Length: 102
Type: CDS
Position: Chr04:49378482..49378616 (+ strand)
Length: 135
Type: CDS
Position: Chr04:49378808..49378894 (+ strand)
Length: 87
Type: CDS
Position: Chr04:49378981..49379071 (+ strand)
Length: 91
Type: CDS
Position: Chr04:49379218..49379272 (+ strand)
Length: 55
Type: CDS
Position: Chr04:49379877..49379937 (+ strand)
Length: 61
Type: CDS
Position: Chr04:49380306..49380527 (+ strand)
Length: 222
Type: CDS
Position: Chr04:49380938..49381054 (+ strand)
Length: 117
Type: CDS
Position: Chr04:49381197..49381286 (+ strand)
Length: 90
Type: CDS
Position: Chr04:49381541..49381717 (+ strand)
Length: 177
Type: CDS
Position: Chr04:49381718..49381910 (+ strand)
Length: 193
Type: three_prime_UTR


>Vigan.04G375700.01
ATGTAATTCA TCGTGTGTGT TGTTGTTCTT AGCTTGGAAT ATCGATCAGG AATTTTTCTT GCATAGGAAC AAGACATATG
TGTCTAGGTA CATTCAATTC ACATAAGAAA AGGTGAGAAG GGGTGTGGAA TTTTATCTTG TAATAAAAAA ATGGATTAAG
ATTTGATAAA TATGGTTTGA GAAAAAACGA ATGAATTTGA AAGAGTAGGG GAATGAGGGG CTGTGGATGC AGATGGAGTA
GGGTCGTTGT CTTATCATAA GCAAAGAAGA GGTGGGGAGT TAGTTGGTTG GGTGAAGGAA ACGAAAAGCA CTTCAAATTT
CAGCCCCATA TCATTACGCT ATACTTTGGA CTACACTCTA CACACACATA CCAAAGCATG GCAAGAATGG TGGCACTCCA
ACAGAACCAA CTATCTTTCT CTCCCTTGGC CTCCTCTCTT TCTGACTTCA GTGGAACCAG ACTTCATACT CAACTTCAGT
TGAAGAGAAA ATTATGGCAG CCAAAAGGGT CTTTCTCTGT CTCTGCATCA AGCACCAAGA AAATCCTCAT CATGGGAGGC
ACCAGATTTA TTGGAGTATT TTTGTCTAGG CTCCTTGTCA AAGAGGGACA CCAGGTGACT TTATTTACGA GAGGTAAAGC
GCCTGTGACT CAACAATTGC CAGGTGAATC AGACGGTGAT TATGCTGATT TTTCTTCCAA GATCTTGCAT TTGAAAGGAG
ACAGGAAGGA CTTTGAATTT GTAAAATCCA GTCTGTCAGC GGAGGGGTAT GATGTTGTTT ATGACATAAA TGGACGAGAG
GCAGATGAAG TTGAGCCCAT TCTGGATGCT CTGCCTAATC TGGAACAGTT TATTTACTGT TCTTCTGCTG GTGTCTATCT
CAAATCTGAC CTATTACCTC ATGCAGAGAC TGATGCAGTT GATCCTAAGA GTAGGCACAA GGGAAAGCTT GAGACAGAAA
GTTTGCTACA ATCAAAGGGT GTTAATTGGA CTTCAATAAG GCCAGTTTAC ATCTATGGAC CCTTGAACTA CAACCCTGTT
GAAGAGTGGT TCTTCCATAG ATTGAAAGCT GGTCGACCAA TTCCTATCCC TAGCTCAGGA ATACAAATAA CACAACTTGG
TCATGTTAAG GATTTGGCAA CAGCTTTCGT TCAGGTTCTT GGTAATGACA AGGCCAGCAA GGAAGTATTC AACATCTCAG
GAGAGAAATA TGTCACATTT GATGGATTAG CAAGAGCGTG TGCTAAGGCT GGTGGATTCC CAGAGCCAGA GCTCGTTCAC
TACAACCCTA AAGATTTTGA TTTTGGGAAA AAGAAGTCAT TTCCATTCCG TGACCAGCAT TTCTTTGCAT CGATCGAGAA
AGCAAAGAGA GTACTTGGGT GGGAACCTGA ATTTGACCTT GTAGAAGGTC TTGCAGACTC ATATAACCTG GACTTTGGTA
GAGGAACATT CCGGAAAGAG GCTGATTTCT CAACAGATGA CATTATTCTT GGCAAGAGTC TTGTTAGTGT ATAAACTTTT
CTATCGATTT TCGGTATTTC ATGTATATTT AGAAAATCTG TTCCGATTTG CTACAATATG AAGTTCTGAA ATATTCACGA
GCCTTTCAAT GTTAATTTTG TATTAATTTT ATTATGCTGA TGGAAAATGG ATGAAAATAT ATATCCGTCA TTATAATTTA
TAAGATTTTA TGTGTGAAGT GTTAACG

>Vigan.04G375700.01
ATGGCAAGAA TGGTGGCACT CCAACAGAAC CAACTATCTT TCTCTCCCTT GGCCTCCTCT CTTTCTGACT TCAGTGGAAC
CAGACTTCAT ACTCAACTTC AGTTGAAGAG AAAATTATGG CAGCCAAAAG GGTCTTTCTC TGTCTCTGCA TCAAGCACCA
AGAAAATCCT CATCATGGGA GGCACCAGAT TTATTGGAGT ATTTTTGTCT AGGCTCCTTG TCAAAGAGGG ACACCAGGTG
ACTTTATTTA CGAGAGGTAA AGCGCCTGTG ACTCAACAAT TGCCAGGTGA ATCAGACGGT GATTATGCTG ATTTTTCTTC
CAAGATCTTG CATTTGAAAG GAGACAGGAA GGACTTTGAA TTTGTAAAAT CCAGTCTGTC AGCGGAGGGG TATGATGTTG
TTTATGACAT AAATGGACGA GAGGCAGATG AAGTTGAGCC CATTCTGGAT GCTCTGCCTA ATCTGGAACA GTTTATTTAC
TGTTCTTCTG CTGGTGTCTA TCTCAAATCT GACCTATTAC CTCATGCAGA GACTGATGCA GTTGATCCTA AGAGTAGGCA
CAAGGGAAAG CTTGAGACAG AAAGTTTGCT ACAATCAAAG GGTGTTAATT GGACTTCAAT AAGGCCAGTT TACATCTATG
GACCCTTGAA CTACAACCCT GTTGAAGAGT GGTTCTTCCA TAGATTGAAA GCTGGTCGAC CAATTCCTAT CCCTAGCTCA
GGAATACAAA TAACACAACT TGGTCATGTT AAGGATTTGG CAACAGCTTT CGTTCAGGTT CTTGGTAATG ACAAGGCCAG
CAAGGAAGTA TTCAACATCT CAGGAGAGAA ATATGTCACA TTTGATGGAT TAGCAAGAGC GTGTGCTAAG GCTGGTGGAT
TCCCAGAGCC AGAGCTCGTT CACTACAACC CTAAAGATTT TGATTTTGGG AAAAAGAAGT CATTTCCATT CCGTGACCAG
CATTTCTTTG CATCGATCGA GAAAGCAAAG AGAGTACTTG GGTGGGAACC TGAATTTGAC CTTGTAGAAG GTCTTGCAGA
CTCATATAAC CTGGACTTTG GTAGAGGAAC ATTCCGGAAA GAGGCTGATT TCTCAACAGA TGACATTATT CTTGGCAAGA
GTCTTGTTAG TGTATAA

>Vigan.04G375700.01
MARMVALQQN QLSFSPLASS LSDFSGTRLH TQLQLKRKLW QPKGSFSVSA SSTKKILIMG GTRFIGVFLS RLLVKEGHQV
TLFTRGKAPV TQQLPGESDG DYADFSSKIL HLKGDRKDFE FVKSSLSAEG YDVVYDINGR EADEVEPILD ALPNLEQFIY
CSSAGVYLKS DLLPHAETDA VDPKSRHKGK LETESLLQSK GVNWTSIRPV YIYGPLNYNP VEEWFFHRLK AGRPIPIPSS
GIQITQLGHV KDLATAFVQV LGNDKASKEV FNISGEKYVT FDGLARACAK AGGFPEPELV HYNPKDFDFG KKKSFPFRDQ
HFFASIEKAK RVLGWEPEFD LVEGLADSYN LDFGRGTFRK EADFSTDDII LGKSLVSV*