GBrowse Details

Vigan.04G375800.01

Basic Information:
Name: Vigan.04G375800.01
Multiple alignment
Variant Information
Position: Chr04:49387082..49390233 (+ strand)
Length: 3152
Functional Information:
Description: Similar to Uncharacterized protein. [I1NBQ6, Glycine max]
GO: Molecular Function: transferase activity, transferring glycosyl groups (GO:0016757)
InterPro: Glycosyl transferase, family 8 (IPR002495)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:1207.08,889.99,0.07,0.31,0.25,1.68,1.93,1.36
Arabidopsis thaliana homolog: AT1G56600.1, AT2G47180.1
Automatic updates:
Name: NM_001354866 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max galactinol synthase 2 (LOC100800249), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001356376 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max galactinol synthase 2 (LOC100792129), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49387082..49387184 (+ strand)
Length: 103
Type: five_prime_UTR
Position: Chr04:49387185..49387511 (+ strand)
Length: 327
Type: CDS
Position: Chr04:49388667..49388987 (+ strand)
Length: 321
Type: CDS
Position: Chr04:49389067..49389201 (+ strand)
Length: 135
Type: CDS
Position: Chr04:49389283..49389486 (+ strand)
Length: 204
Type: CDS
Position: Chr04:49389487..49390233 (+ strand)
Length: 747
Type: three_prime_UTR


>Vigan.04G375800.01
CAAAACAACC TCTTCAGTGA TCTTTGCTTA GTAAACCAAA CCAGGCTTGT TCCTAACTCT TGGAACCTTC TATCTTCTCT
TTTCCTTTCC TCTTACAGAA ATCATGACAC CCAACATCAC CACCGTCACT GTCAATGGCA CCACTGAGCA AACCAAAAGT
GGTAGTAGCC GTGCCTTTGT GACCTTCCTT GCTGGGAATG GTGATTACGT AAAAGGTGTT GTGGGTTTGG CCAAAGGGTT
GAGAAAGGCC AAAAGCATGT ACCCTTTGGT GGTGGCTGTG TTACCTGATG TTCCTGAGGA ACATCGTGAG ATTTTGAAAT
CCCAAGGTTG CACTGTCAGG GAGATTGAAC CTGTGTATCC ACCTGAGAAT CAGACACAGT TCGCCATGGC TTATTATGTC
ATCAATTATT CCAAGCTACG TATCTGGGAG TTTGTGGAGT ACAGAAAGAT GATATACCTA GATGGTGACA TCCAGGTTTT
TGAAAACATT GACCACTTGT TTGATCTTCC TGATAACTAT TTCTATGCGG TCATGGATTG TTTCTGCGAG AAGACTTGGA
GCCACAGCCC TCAGTACAAG ATTGGTTACT GCCAACAGTG CCCTGATAAA GTTCAGTGGC CCTCTCATTT GGGTCCTAAA
CCTCCTCTAT ATTTCAACGC TGGCATGTTT GTCTATGAGC CTAATCTTGT CACTTACAGT GATCTTCTTC AAACTCTTCA
AATCACCAAG CCCACTTCTT TTGCCGAGCA GGACTTTCTG AATATGTACT TCAAGGACAA GTACAAGCCT ATACCAAACT
TGTACAACCT TGTACTGGCC ATGTTGTGGC GTCACCCCGA GAATGTTGAA CTCGACAAAG TTCAAGTGGT TCATTATTGT
GCTGCTGGGT CTAAGCCTTG GAGATTCACT GGGAAGGAGC AGAACATGGA GAGGGAAGAT ATCAAGATAC TTGTGAAGAA
GTGGTGGGAG ATATACGAAG ATGAGACACT AGACTACAAT AACGACAACT CTGTCAATGT GGAACCTTTC TCTTCAGCAC
TGTCGGAGCC TGATGTTGTT CCACTCGTTT CGGCACCTTC TGCTGCATAA TTTGCTTGCT TTGTGTGCTT ATTACCATTT
ACATCTATAA ATTAGAGTCT AATGACTAAG TATATGCATA TTTATTTGCT TTATAGTTTT GGGTTTTTAT GAAGGGAACA
ACGTCTATGG CTTTTGGACA CTGGACGATG ACCTTCACCT ACACAAAGTT ACAAGTTATA CAACTTTTTA TTTTAAGGTT
TTAGAGGGCC TTTTATTACC GGTCCTACTT TGTTTTCATT GATCATGAGC TGTGAATGAT ATCCTTTGCT TTATTAAATT
TAAATTTTCA AGGTTCGTTT TTTCATTTTT CATAAAATTA AAAATGTAGC TAAAAGGTGG CTAATAGATC GTTAAATAAA
ATACAAGCTT TTAACCGTAT TTATGTCCTC TTATGACTAA AGATTTTTCC TTTTGTGGTC TATGTTTTTG TGTTCGTGAT
AGCACAATTT CTTTCTGGAA TGATAAAGTT AAAACAAACG ACCACGAGAT AGCGCTACAT TACATTCTAT CGCAACATAA
AGTTGTGCTT CATCCGACAC TATTATAAAC AAGGGTATTT TTTATTAATG TAGAAAATCA ATTTTCTCTT GTTTAATTGT
ATTTGCCCCA ATTAAAATAA TTTAAAGTTG TTATAATGTA TAAACTAGGT ATATACATTT ATATTTAACT GTCACACATG
ATAATTTCTT TTGGATTTAA TTTAGATCTA GAGCTGTAGA ATTAATATGC TGCTCTTACC ACACCAAAAA AAGTTTG

>Vigan.04G375800.01
ATGACACCCA ACATCACCAC CGTCACTGTC AATGGCACCA CTGAGCAAAC CAAAAGTGGT AGTAGCCGTG CCTTTGTGAC
CTTCCTTGCT GGGAATGGTG ATTACGTAAA AGGTGTTGTG GGTTTGGCCA AAGGGTTGAG AAAGGCCAAA AGCATGTACC
CTTTGGTGGT GGCTGTGTTA CCTGATGTTC CTGAGGAACA TCGTGAGATT TTGAAATCCC AAGGTTGCAC TGTCAGGGAG
ATTGAACCTG TGTATCCACC TGAGAATCAG ACACAGTTCG CCATGGCTTA TTATGTCATC AATTATTCCA AGCTACGTAT
CTGGGAGTTT GTGGAGTACA GAAAGATGAT ATACCTAGAT GGTGACATCC AGGTTTTTGA AAACATTGAC CACTTGTTTG
ATCTTCCTGA TAACTATTTC TATGCGGTCA TGGATTGTTT CTGCGAGAAG ACTTGGAGCC ACAGCCCTCA GTACAAGATT
GGTTACTGCC AACAGTGCCC TGATAAAGTT CAGTGGCCCT CTCATTTGGG TCCTAAACCT CCTCTATATT TCAACGCTGG
CATGTTTGTC TATGAGCCTA ATCTTGTCAC TTACAGTGAT CTTCTTCAAA CTCTTCAAAT CACCAAGCCC ACTTCTTTTG
CCGAGCAGGA CTTTCTGAAT ATGTACTTCA AGGACAAGTA CAAGCCTATA CCAAACTTGT ACAACCTTGT ACTGGCCATG
TTGTGGCGTC ACCCCGAGAA TGTTGAACTC GACAAAGTTC AAGTGGTTCA TTATTGTGCT GCTGGGTCTA AGCCTTGGAG
ATTCACTGGG AAGGAGCAGA ACATGGAGAG GGAAGATATC AAGATACTTG TGAAGAAGTG GTGGGAGATA TACGAAGATG
AGACACTAGA CTACAATAAC GACAACTCTG TCAATGTGGA ACCTTTCTCT TCAGCACTGT CGGAGCCTGA TGTTGTTCCA
CTCGTTTCGG CACCTTCTGC TGCATAA

>Vigan.04G375800.01
MTPNITTVTV NGTTEQTKSG SSRAFVTFLA GNGDYVKGVV GLAKGLRKAK SMYPLVVAVL PDVPEEHREI LKSQGCTVRE
IEPVYPPENQ TQFAMAYYVI NYSKLRIWEF VEYRKMIYLD GDIQVFENID HLFDLPDNYF YAVMDCFCEK TWSHSPQYKI
GYCQQCPDKV QWPSHLGPKP PLYFNAGMFV YEPNLVTYSD LLQTLQITKP TSFAEQDFLN MYFKDKYKPI PNLYNLVLAM
LWRHPENVEL DKVQVVHYCA AGSKPWRFTG KEQNMEREDI KILVKKWWEI YEDETLDYNN DNSVNVEPFS SALSEPDVVP
LVSAPSAA*