GBrowse Details

Vigan.04G376400.01

Basic Information:
Name: Vigan.04G376400.01
Multiple alignment
Variant Information
Position: Chr04:49442750..49445638 (+ strand)
Length: 2889
Functional Information:
Description: Similar to Uncharacterized protein. [G7IAA5, Medicago truncatula]
GO: Biological Process: proteolysis (GO:0006508)
InterPro: Peptidase C15, pyroglutamyl peptidase I (IPR000816)
Peptidase C15, pyroglutamyl peptidase I-like (IPR016125)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:14.18,6.84,29.06,18.91,9.19,29.69,21.31,16.29
Arabidopsis thaliana homolog: AT1G56700.1
Automatic updates:
Name: NM_001249051 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100305735 (LOC100305735), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001250393 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidase C15, pyroglutamyl peptidase I-like protein (LOC100306599), transcript variant 3, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001361428 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidase C15, pyroglutamyl peptidase I-like protein (LOC100306599), transcript variant 1, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Name: NM_001361429 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max peptidase C15, pyroglutamyl peptidase I-like protein (LOC100306599), transcript variant 2, mRNA.
PubMed ID: 18927222 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:49442750..49443393 (+ strand)
Length: 644
Type: five_prime_UTR
Position: Chr04:49443394..49443666 (+ strand)
Length: 273
Type: CDS
Position: Chr04:49444481..49444585 (+ strand)
Length: 105
Type: CDS
Position: Chr04:49444689..49444736 (+ strand)
Length: 48
Type: CDS
Position: Chr04:49445188..49445427 (+ strand)
Length: 240
Type: CDS
Position: Chr04:49445428..49445638 (+ strand)
Length: 211
Type: three_prime_UTR


>Vigan.04G376400.01
TTGTAAGACC CTCTCTCTCA ATCAAAGTTC CGTTGCGTTT TCTCCTTCAA TTTTGTTTTT GTTTTGTAAT TCATGGCTCT
TTGATCATTT GGGTGCTGAT AATAATCTTG TTCTTTATTT TGTTTTCTTT GGGTCTTGTG TTTATGGTTC TTTTTCGAGT
TCTGCTACAA TTCAGCGATG AACAAAGTGT TTTTCTTTCT TCGGAGACTG ATATTTATCT GGAAAGCGAA AAACTTTGGT
TCCGCATGCG ATCACCCTTC TTTGTACAGT CTTGAAACTG ATTTTTGTGT TGTTGTTGGT TACTGATATC TTAGATTAGT
GAATTAAGAG ATTATATGTT TAGACCCATT TCTTCAAAGT AGACTTCTTT TCTGGTAGTT TATGCAATCC ATCAACATTA
ATATTAGTAT CTGAACACGT TGAATCAAAG TTTGGTTGGT GTTTTCTTAA AAGGTTGGGA GGGTTTTAAT ATTTTCAGAA
GATGGAGATT AAGAACTGTA ATATATTTCG TTGGCTATGA TCCACCATGT AGAAAATATT TCAGTTTTTC TGTCTCATAA
AAGTTCAAAT TTATTGATGC AGGTATTTGG AAAGTAGTTT TGATTTGAGG CTCTAGTCAT TACCAGCTTT ACTGTATTTG
GCAAATGGGT TCTGAAGGTC CAACAACACC CATAACAACA ATTCATGTGA CAGGATTTAA GAAATTCCAT GGAGTTGCTG
AGAATCCGAC CGAAACAATT GTCAATAATT TGGCAGAGTA CATGAATAAG AAGGGTTTGC CAAAGGGTTT AGTTATTGGG
AGCTGCAGCA TTCTTGAAAC TGCTGGTCAA GGAGCACTTG TTTCACTGTA CCAGAGATTG CAATCCGCTG TTATTTCCAA
GGACTCTGAA TCTTCAAATT CTAATAGAAC TATTTGGCTG CATTTTGGGG TTAACAGTGG TGCAACAAGG TTTGCTATAG
AGAACCAGGC AGTCAATGAG GCTAATTTTC GATGTCCGGA TGAAATGGGT TGGAAGCCCC AGAAAGTCCC CATTGTTCCT
TCGGATGGTG GAATTTCACG AACAAGGGAG ACTTCACTCC CTGTAGAGGA GATCACCAAA GCCTTGACAG AAAAGGGATA
CGAAGTTATG GTATCAGATG ATGCAGGCAG GTTCGTGTGC AATTACGTTT ACTATCACTC CCTTCGCTTT GCCGAGCGGA
ATGGAATCAA ATCCCTTTTC GTGCACGTGC CACTCTTCTT CACAATAAAT GAAGAGACTC AAATGAAATT CGCTGCTTCC
TTGTTAGAAG TTCTTGCCTC TAAATCTTAG AAGTATCATT ACATTTGGAC CCTCAAAAAT GGGTGCTCCT ATATTCGTTC
TGGTGTGAAA GTGGATGAAT GTGTATCTTG AATGAGATAC TTATAATAAA ATTATTGTAT TTAAATGGAA CCACATATGT
TTCTGAGTTA AGGTTCCCTG TACTTTGTGA AGACAATTTG ATTGATACAT CTTCAATGTT TACCTTGTGA ATAAATGTTC
A

>Vigan.04G376400.01
ATGGGTTCTG AAGGTCCAAC AACACCCATA ACAACAATTC ATGTGACAGG ATTTAAGAAA TTCCATGGAG TTGCTGAGAA
TCCGACCGAA ACAATTGTCA ATAATTTGGC AGAGTACATG AATAAGAAGG GTTTGCCAAA GGGTTTAGTT ATTGGGAGCT
GCAGCATTCT TGAAACTGCT GGTCAAGGAG CACTTGTTTC ACTGTACCAG AGATTGCAAT CCGCTGTTAT TTCCAAGGAC
TCTGAATCTT CAAATTCTAA TAGAACTATT TGGCTGCATT TTGGGGTTAA CAGTGGTGCA ACAAGGTTTG CTATAGAGAA
CCAGGCAGTC AATGAGGCTA ATTTTCGATG TCCGGATGAA ATGGGTTGGA AGCCCCAGAA AGTCCCCATT GTTCCTTCGG
ATGGTGGAAT TTCACGAACA AGGGAGACTT CACTCCCTGT AGAGGAGATC ACCAAAGCCT TGACAGAAAA GGGATACGAA
GTTATGGTAT CAGATGATGC AGGCAGGTTC GTGTGCAATT ACGTTTACTA TCACTCCCTT CGCTTTGCCG AGCGGAATGG
AATCAAATCC CTTTTCGTGC ACGTGCCACT CTTCTTCACA ATAAATGAAG AGACTCAAAT GAAATTCGCT GCTTCCTTGT
TAGAAGTTCT TGCCTCTAAA TCTTAG

>Vigan.04G376400.01
MGSEGPTTPI TTIHVTGFKK FHGVAENPTE TIVNNLAEYM NKKGLPKGLV IGSCSILETA GQGALVSLYQ RLQSAVISKD
SESSNSNRTI WLHFGVNSGA TRFAIENQAV NEANFRCPDE MGWKPQKVPI VPSDGGISRT RETSLPVEEI TKALTEKGYE
VMVSDDAGRF VCNYVYYHSL RFAERNGIKS LFVHVPLFFT INEETQMKFA ASLLEVLASK S*