GBrowse Details

Vigan.04G378200.01

Basic Information:
Name: Vigan.04G378200.01
Multiple alignment
Variant Information
Position: Chr04:49596672..49599245 (+ strand)
Length: 2574
Functional Information:
Description: Similar to Uncharacterized protein. [I1NBM2, Glycine max]
GO: Molecular Function: DNA binding (GO:0003677)
Molecular Function: chromatin binding (GO:0003682)
InterPro: SANT/Myb domain (IPR001005)
Homeodomain-like (IPR009057)
Myb domain (IPR017930)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.00,0.11,1.47,0.31,0.95,7.34,6.82,7.27
Arabidopsis thaliana homolog: AT1G09540.1
Automatic updates:
Name: DQ822966 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max MYB transcription factor MYB160 (MYB160) mRNA, partial cds.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49596672..49597194 (+ strand)
Length: 523
Type: five_prime_UTR
Position: Chr04:49597195..49597327 (+ strand)
Length: 133
Type: CDS
Position: Chr04:49597466..49597595 (+ strand)
Length: 130
Type: CDS
Position: Chr04:49597759..49598815 (+ strand)
Length: 1057
Type: CDS
Position: Chr04:49598816..49599245 (+ strand)
Length: 430
Type: three_prime_UTR


>Vigan.04G378200.01
CCTTGGATAA CTAGTAGTTG TTGTTGTTGT TGTTGTAAGT AGTAGTTGAT TGGGAGTGTA AAACTCTTGG CTGTAAAAGT
GCAAAGACTA TTTTCTGGTA ACAAAAACCT GAATGGCCAT GGTGGTGGTG GGACATTCTC ATAAATAAGT CAAAGCATAT
GATCCTCCCT GGTGGGATGT GATCCGTTGG ATATAAGAGA GGAGTTGCAG GAGGAGCGTT GGATGAGAGT GTGGGACCGA
AACAATTATG TGGAATGTCT CGTGAAGAAA AAAGATGAAG CTAGTTCTGG AAGGTCAGAT ATATAAATTT CAAAACGACA
GTGTCCAATC ACCCTTCTTA TTATAAGGCT CCTTCTATAT ATTCGAATCT CTATGCAAGT TGCAAAATTC TTAAGCTCCA
ACGCTTCCCA TTAATTCACA TCAAAGCTCC TGTGTCCTTC TTGACGATCC ACGTAGGTTC TGACACAAGA CTTTTGCCGC
TTTTAACAAA CATTTCAAAT CGCTTAAGGC AGCCATAGTG CACATGGGGA GACACTCTTG CTGCTACAAA CAGAAGCTTC
GTAAAGGCCT CTGGTCTCCT GAGGAAGACG AGAAGCTTTT GAATTACATC ACCAAACATG GCCATGGATG TTGGAGCTCC
GTTCCAAAAC TGGCTGGCCT TCAGAGGTGT GGCAAGAGCT GCAGATTAAG GTGGATTAAT TACCTTAGGC CAGATTTGAA
GAGAGGGGCG TTCTCACAGC AGGAAGAGAA CTCCATAATT GAACTTCATG CAGTCCTTGG CAACAGGTGG TCGCAGATCG
CTGCCCAGTT ACCAGGAAGA ACTGATAATG AGATAAAGAA TCTATGGAAT TCCTGTCTGA AGAAGAAGCT TAGGCAAAGA
GGCATTGACC CAAACACACA CCAACCCCTC TCTGAGGTTG AGAATGACAA GGACAAGCCT CTCACGGCTG ACAGAAGCAA
TCAGAAAGCC TCCAATGAGG TGAGTGTTGT TGAGCCACCA AAACAAAAGC CCATAACTTG TACTACTTCC ATGCCAATGG
ATAGATATCC CCTTGAAGTT TCTGCTACCT CAAAGATCAG CAGTGGTGGC AACAACAGCA GCAGCACCCT AGACAGGTTT
GGCACTTGTC ATGACAACAA CAGCTCCATG GCTAGTTCTG ATATGATGGG AATGGGATAC TTCCCTTTCC AGCACCTGAA
CTATGGACCA AACATGGGAC TCACTACTGC AAACCCCAAC AACACCCCAC TTTGTTTCAT TCCTGGTTCC ACATCTTCCC
AAATGATGTC AGAGCTGAAT TCCACCATGC TCCATTCTGT GTTCTCAACA CATGTAAAGC CCACTGTCAG CCTCCAGTCT
AATAACAACA ACCCATCTTC CATATTTTCT GACGGGGTTC AGAACTGGGA AGGAAGTGCC TTCAGCAATA ATAACAACAA
CAACAATGCA AGCAAAAGCA ATGGGAGCAG TAGCTGCAGC ATCCAATTAC AAAGCAGCAC TAACTTCCTT GATCATGGCA
CAATAACATG GGGGCTGCAG GCAGAATCTG CCACCAAGAC AGATAATAAA GATGCTAATT CTTCTCATGT GGTACCCTTG
CAATCAGAAG CAGAAGACAT CAAATGGTCC GAGTATCTGA ACAACACCCC TTTTTACCTG GGAAGCACAG TGCAGCAGCA
TCAAACCACT CACTCTCTCT ACAGTGACGA GGTGAAGCCA GAAACAGCCT TCATAGCAGA CGAATCAAGT ACCAGTTGGC
ACCACAGCCA GCACTTTCAA CCCTCGGATA TATATAGCAA AGATCTCCAG AGATTTTCAG TAGCCTTTGG ACAATCCCTG
TAGCCTGCAG GCAATGACTG TACTTAACAC GTGGAAACCT CAACCAAAGA GTGGAGCAAG ATGCCGACAT TTCCAATGTG
AAGTAGGTCA GAAATTTGTC GTGAGTTCTG ACCGCAGGTG TGTGCTGTAA ATTTTTCTTT TGATATTGTA AATGTGTCCG
ATTTATACCA AAAAAGAAAC ACCTCAGCAA TCAGCATTAT GTTACAGTAT AACTAATATT TGTGATTGAT TCAAGCTTCT
TCTTCTTCTT CCATCACTTT GTTCATTAAA CACAGAATAA GGCTTGTTCC ATACAGATCT CGATTCCTTA TACAGTATTC
ATATGGATCT ACATACAATT TATGATAAAA GTGAGCATTA TTTTTCTGAA TTAAGTTTTT TTTTTTGTTT TGTTGCTATA
TTGTGTAATA GTTACCATTA AGGTGATGGA GCG

>Vigan.04G378200.01
ATGGGGAGAC ACTCTTGCTG CTACAAACAG AAGCTTCGTA AAGGCCTCTG GTCTCCTGAG GAAGACGAGA AGCTTTTGAA
TTACATCACC AAACATGGCC ATGGATGTTG GAGCTCCGTT CCAAAACTGG CTGGCCTTCA GAGGTGTGGC AAGAGCTGCA
GATTAAGGTG GATTAATTAC CTTAGGCCAG ATTTGAAGAG AGGGGCGTTC TCACAGCAGG AAGAGAACTC CATAATTGAA
CTTCATGCAG TCCTTGGCAA CAGGTGGTCG CAGATCGCTG CCCAGTTACC AGGAAGAACT GATAATGAGA TAAAGAATCT
ATGGAATTCC TGTCTGAAGA AGAAGCTTAG GCAAAGAGGC ATTGACCCAA ACACACACCA ACCCCTCTCT GAGGTTGAGA
ATGACAAGGA CAAGCCTCTC ACGGCTGACA GAAGCAATCA GAAAGCCTCC AATGAGGTGA GTGTTGTTGA GCCACCAAAA
CAAAAGCCCA TAACTTGTAC TACTTCCATG CCAATGGATA GATATCCCCT TGAAGTTTCT GCTACCTCAA AGATCAGCAG
TGGTGGCAAC AACAGCAGCA GCACCCTAGA CAGGTTTGGC ACTTGTCATG ACAACAACAG CTCCATGGCT AGTTCTGATA
TGATGGGAAT GGGATACTTC CCTTTCCAGC ACCTGAACTA TGGACCAAAC ATGGGACTCA CTACTGCAAA CCCCAACAAC
ACCCCACTTT GTTTCATTCC TGGTTCCACA TCTTCCCAAA TGATGTCAGA GCTGAATTCC ACCATGCTCC ATTCTGTGTT
CTCAACACAT GTAAAGCCCA CTGTCAGCCT CCAGTCTAAT AACAACAACC CATCTTCCAT ATTTTCTGAC GGGGTTCAGA
ACTGGGAAGG AAGTGCCTTC AGCAATAATA ACAACAACAA CAATGCAAGC AAAAGCAATG GGAGCAGTAG CTGCAGCATC
CAATTACAAA GCAGCACTAA CTTCCTTGAT CATGGCACAA TAACATGGGG GCTGCAGGCA GAATCTGCCA CCAAGACAGA
TAATAAAGAT GCTAATTCTT CTCATGTGGT ACCCTTGCAA TCAGAAGCAG AAGACATCAA ATGGTCCGAG TATCTGAACA
ACACCCCTTT TTACCTGGGA AGCACAGTGC AGCAGCATCA AACCACTCAC TCTCTCTACA GTGACGAGGT GAAGCCAGAA
ACAGCCTTCA TAGCAGACGA ATCAAGTACC AGTTGGCACC ACAGCCAGCA CTTTCAACCC TCGGATATAT ATAGCAAAGA
TCTCCAGAGA TTTTCAGTAG CCTTTGGACA ATCCCTGTAG 

>Vigan.04G378200.01
MGRHSCCYKQ KLRKGLWSPE EDEKLLNYIT KHGHGCWSSV PKLAGLQRCG KSCRLRWINY LRPDLKRGAF SQQEENSIIE
LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG IDPNTHQPLS EVENDKDKPL TADRSNQKAS NEVSVVEPPK
QKPITCTTSM PMDRYPLEVS ATSKISSGGN NSSSTLDRFG TCHDNNSSMA SSDMMGMGYF PFQHLNYGPN MGLTTANPNN
TPLCFIPGST SSQMMSELNS TMLHSVFSTH VKPTVSLQSN NNNPSSIFSD GVQNWEGSAF SNNNNNNNAS KSNGSSSCSI
QLQSSTNFLD HGTITWGLQA ESATKTDNKD ANSSHVVPLQ SEAEDIKWSE YLNNTPFYLG STVQQHQTTH SLYSDEVKPE
TAFIADESST SWHHSQHFQP SDIYSKDLQR FSVAFGQSL*