VIGGS:GBrowse

Vigan.04G378600.01

Basic Information:

Name:	Vigan.04G378600.01 Multiple alignment Variant Information
Position:	Chr04:49633183..49634660 (+ strand)
Length:	1478

Functional Information:

Description:	Similar to Uncharacterized protein. [C7S8D5, Glycine max]
GO:	Molecular Function: manganese ion binding (GO:0030145)
GO:	Molecular Function: nutrient reservoir activity (GO:0045735)
InterPro:	Germin (IPR001929)
	Cupin 1 (IPR006045)
	RmlC-like cupin domain (IPR011051)
	RmlC-like jelly roll fold (IPR014710)
	Germin, manganese binding site (IPR019780)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.06,1.37,42.11,24.80,78.42,49.55,392.65,34.79
Arabidopsis thaliana homolog:	AT1G09560.1

Structure :

[show][hide]Parts:

Position:	Chr04:49633183..49633399 (+ strand)
Length:	217
Type:	five_prime_UTR

Position:	Chr04:49633400..49633511 (+ strand)
Length:	112
Type:	CDS

Position:	Chr04:49633905..49634449 (+ strand)
Length:	545
Type:	CDS

Position:	Chr04:49634450..49634660 (+ strand)
Length:	211
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G378600.01
TGACTTAATA TGATTACAAT ATTCTTTCCT TCTCCATCTA CTCTCTACCG CTTGTGATAA ATACCGCAAC CACGCCATCA
CTTCCTTCAA ACTTCCACCT CATACAAAAC AATTCCAACA TACTTTTCTT CTCTTTTCTC CATTCGTTCT TCTTAAAACT
CTCTGCTTTT TTTTCTCTCC TTTCATTCCC AACTTCACTT CTCTTACATA CTCTGATATG AAGCTCACAG CCTCGCTCCT
ACTATTCACT TTTGCTTTGG TGTTAACCAC CACCACTGCA TCAGATCCTG ATCCTCTTCA AGACCTCTGT GTCGCTGATC
TTGCCTCAGC TGTTAAAGTG AATGGATTCA CCTGCAAAGA TGCTGCGAAG GTAAATGCGA CTGATTTCTT CTCAAACATA
TTAGCGAAAG CAGGTGCGAC AAACAACACC TATGGGTCCT TGGTGACTGC AGCCAATGTT CAGAAAATCC CAGGACTGAA
CACCCTTGGT GTATCTATGT CACGAATTGA CTATGCTCCA GGTGGGATCA ACCCTCCTCA CACGCACCCA CGTGCCACCG
AGATTGTGTT TGTGATGGAA GGAACACTCG ATGTGGGATT CATAACCACA GCCAATGTGC TCATATCAAA GACCATCACC
AAGGGTGAGA CTTTTGTGTT CCCAAAAGGC TTAGTTCATT TCCAAAAGAA CAATGCGAAG GAACCTGCTT CGGTCATTGC
AGCCTTCAAC AGTCAATTGC CTGGCACACA GTCCATTGCT CTCACCCTCT TTACAGCCAC ACCACCTGTT CCAGACAATG
TCTTGACCAA GGCCTTCCAG ATTGGTACCA AGGAGGTTGA GAAAATCAAG ACCAGGCTTG CACCTAAGAA ATAATTTATG
TTTGAATCTG CTTCTGTTAT CTCTGCCATT GCTCTTTCAC GCTTCTTCTG TCTTCTCCTT GTTGCTTTAC GATTCATGTT
TGTTGGAAAA TCATAAAGGA TTTAGAATGT GAGTGAATGG GGTATATTCA TTTCTTTGAT AATTGCAATT TGAAATATCC
ACGCACGCTT CTTATTTTCT TAATAAAATC TTTCATTAGT GGTAA

[show][hide][copy]CDS

>Vigan.04G378600.01
ATGAAGCTCA CAGCCTCGCT CCTACTATTC ACTTTTGCTT TGGTGTTAAC CACCACCACT GCATCAGATC CTGATCCTCT
TCAAGACCTC TGTGTCGCTG ATCTTGCCTC AGCTGTTAAA GTGAATGGAT TCACCTGCAA AGATGCTGCG AAGGTAAATG
CGACTGATTT CTTCTCAAAC ATATTAGCGA AAGCAGGTGC GACAAACAAC ACCTATGGGT CCTTGGTGAC TGCAGCCAAT
GTTCAGAAAA TCCCAGGACT GAACACCCTT GGTGTATCTA TGTCACGAAT TGACTATGCT CCAGGTGGGA TCAACCCTCC
TCACACGCAC CCACGTGCCA CCGAGATTGT GTTTGTGATG GAAGGAACAC TCGATGTGGG ATTCATAACC ACAGCCAATG
TGCTCATATC AAAGACCATC ACCAAGGGTG AGACTTTTGT GTTCCCAAAA GGCTTAGTTC ATTTCCAAAA GAACAATGCG
AAGGAACCTG CTTCGGTCAT TGCAGCCTTC AACAGTCAAT TGCCTGGCAC ACAGTCCATT GCTCTCACCC TCTTTACAGC
CACACCACCT GTTCCAGACA ATGTCTTGAC CAAGGCCTTC CAGATTGGTA CCAAGGAGGT TGAGAAAATC AAGACCAGGC
TTGCACCTAA GAAATAA

[show][hide][copy]PROTEIN

>Vigan.04G378600.01
MKLTASLLLF TFALVLTTTT ASDPDPLQDL CVADLASAVK VNGFTCKDAA KVNATDFFSN ILAKAGATNN TYGSLVTAAN
VQKIPGLNTL GVSMSRIDYA PGGINPPHTH PRATEIVFVM EGTLDVGFIT TANVLISKTI TKGETFVFPK GLVHFQKNNA
KEPASVIAAF NSQLPGTQSI ALTLFTATPP VPDNVLTKAF QIGTKEVEKI KTRLAPKK*