GBrowse Details

Vigan.04G380300.01

Basic Information:
Name: Vigan.04G380300.01
Multiple alignment
Variant Information
Position: Chr04:49758704..49759989 (+ strand)
Length: 1286
Functional Information:
Description: Similar to Uncharacterized protein. [I1NBK4, Glycine max]
GO: Biological Process: plant-type cell wall organization (GO:0009664)
Cellular Component: extracellular region (GO:0005576)
InterPro: Expansin (IPR002963)
Expansin/pollen allergen, DPBB domain (IPR007112)
Expansin, cellulose-binding-like domain (IPR007117)
Expansin/Lol pI (IPR007118)
RlpA-like double-psi beta-barrel domain (IPR009009)
Barwin-like endoglucanase (IPR014733)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.16,0.00,0.02,0.03,0.00,0.15,77.01,0.04
Arabidopsis thaliana homolog: AT4G01630.1
Automatic updates:
Name: NM_001255293 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max putative expansin-A17-like (LOC100777045), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:49758704..49758712 (+ strand)
Length: 9
Type: five_prime_UTR
Position: Chr04:49758713..49758920 (+ strand)
Length: 208
Type: CDS
Position: Chr04:49759027..49759348 (+ strand)
Length: 322
Type: CDS
Position: Chr04:49759440..49759749 (+ strand)
Length: 310
Type: CDS
Position: Chr04:49759750..49759989 (+ strand)
Length: 240
Type: three_prime_UTR


>Vigan.04G380300.01
CTGCTATAAA TGATAATAGG AATATGCCAT AATAGTATCA AATTAAGCAA TCCTTCATTG TCTTGTCAAA GAGAGAGAGA
GAAGATGGAA AAGTTCATTA TGAGTGGTTT CATATTGCTT GTGGTGCTAT TCACTACAGA ACTTGGACTG GCATCAGCTG
CTTGGTTGCG AGCTCATGCA ACATTCTATG GTGGAAGTGA TGCCTCAGGA ACAATGGGAG GAGCATGTGG CTATGGAAAT
CTCAACACAG ATGGTTATGG TATAAAAACA GCTGCTTTGA GCACTGTTTT GTTTAATGAC GGAAAATCAT GCGGTGGTTG
CTATACTATA GTTTGTGACG CAAACCAAGT GCCCCAATGG TGCCTTAGGG GCACTTCCAT CACTATCACT GCCACGAATT
TCTGTCCCCC AAACTATGCT CTCCCTAATG ACAATGGTGG TTGGTGTAAT CCTCCTAGAC CACACTTTGA CATGTCTCAA
CCTGCATTTG AGACAATAGC AAAGTACAAA GCTGGGATTG TGCCAATTTT TTACAGGAGA GTTGGGTGCA AAAGAAGTGG
AGGCATCAGA TTTAGCATCA ACGGGAGAGA CTATTTTGAA TTGGTGCTTA TAAGCAACGT AGGTGGAGGT GGAGAGATTT
CTAGAGTTTG GATCAAAGGG TCGAAAATGA ACAAGTGGGA AAGCATGACA AGAAATTGGG GTGCTAACTG GCAAAGCCTC
AGATATCTGA ATGGTCAGAG TTTGTCTTTC AAAGTTCAAC TCAGCAATGG GAAGACTCGC ACTGCAATCA ATGCAGCACC
CTCCAATTGG AGATTTGGCC AGTCTTTCAT CCCCAATGTT CAGTTTTGAA AACTCAAATT AATGCATCTA TCAATATTAC
TGTTTGACTC TTCTTCTATT CCCTAAGCCT GTAACAATTA CTGCTATAAA TATTCCATGT GGTTGTGGCT CAGCAATTCG
AGTATTGCAA TGAAGCCTAC CAACTTTGGT CTGTATTATT TACATAAGCA CGAAATATAT TGAATTAATA TTGGAAGCAT
ACATTTTACT TATGACGTAC TAATATATCT TAATTATCAT TTTCTGATA

>Vigan.04G380300.01
ATGATAATAG GAATATGCCA TAATAGTATC AAATTAAGCA ATCCTTCATT GTCTTGTCAA AGAGAGAGAG AGAAGATGGA
AAAGTTCATT ATGAGTGGTT TCATATTGCT TGTGGTGCTA TTCACTACAG AACTTGGACT GGCATCAGCT GCTTGGTTGC
GAGCTCATGC AACATTCTAT GGTGGAAGTG ATGCCTCAGG AACAATGGGA GGAGCATGTG GCTATGGAAA TCTCAACACA
GATGGTTATG GTATAAAAAC AGCTGCTTTG AGCACTGTTT TGTTTAATGA CGGAAAATCA TGCGGTGGTT GCTATACTAT
AGTTTGTGAC GCAAACCAAG TGCCCCAATG GTGCCTTAGG GGCACTTCCA TCACTATCAC TGCCACGAAT TTCTGTCCCC
CAAACTATGC TCTCCCTAAT GACAATGGTG GTTGGTGTAA TCCTCCTAGA CCACACTTTG ACATGTCTCA ACCTGCATTT
GAGACAATAG CAAAGTACAA AGCTGGGATT GTGCCAATTT TTTACAGGAG AGTTGGGTGC AAAAGAAGTG GAGGCATCAG
ATTTAGCATC AACGGGAGAG ACTATTTTGA ATTGGTGCTT ATAAGCAACG TAGGTGGAGG TGGAGAGATT TCTAGAGTTT
GGATCAAAGG GTCGAAAATG AACAAGTGGG AAAGCATGAC AAGAAATTGG GGTGCTAACT GGCAAAGCCT CAGATATCTG
AATGGTCAGA GTTTGTCTTT CAAAGTTCAA CTCAGCAATG GGAAGACTCG CACTGCAATC AATGCAGCAC CCTCCAATTG
GAGATTTGGC CAGTCTTTCA TCCCCAATGT TCAGTTTTGA 

>Vigan.04G380300.01
MIIGICHNSI KLSNPSLSCQ REREKMEKFI MSGFILLVVL FTTELGLASA AWLRAHATFY GGSDASGTMG GACGYGNLNT
DGYGIKTAAL STVLFNDGKS CGGCYTIVCD ANQVPQWCLR GTSITITATN FCPPNYALPN DNGGWCNPPR PHFDMSQPAF
ETIAKYKAGI VPIFYRRVGC KRSGGIRFSI NGRDYFELVL ISNVGGGGEI SRVWIKGSKM NKWESMTRNW GANWQSLRYL
NGQSLSFKVQ LSNGKTRTAI NAAPSNWRFG QSFIPNVQF*