GBrowse Details

Vigan.04G395100.01

Basic Information:
Name: Vigan.04G395100.01
Multiple alignment
Variant Information
Position: Chr04:50893838..50898366 (+ strand)
Length: 4529
Functional Information:
Description: Similar to Uncharacterized protein. [I1JQL5, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: WD40 repeat (IPR001680)
WD40/YVTN repeat-like-containing domain (IPR015943)
WD40-repeat-containing domain (IPR017986)
WD40 repeat, conserved site (IPR019775)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.76,18.54,7.58,11.72,13.89,10.08,9.23,7.35
Arabidopsis thaliana homolog: AT2G47790.1
Automatic updates:
Name: NM_001255603 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max WD repeat-containing protein 89 homolog (LOC100794786), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:50893838..50893961 (+ strand)
Length: 124
Type: five_prime_UTR
Position: Chr04:50893962..50894092 (+ strand)
Length: 131
Type: CDS
Position: Chr04:50894220..50894427 (+ strand)
Length: 208
Type: CDS
Position: Chr04:50894529..50894624 (+ strand)
Length: 96
Type: CDS
Position: Chr04:50894710..50894784 (+ strand)
Length: 75
Type: CDS
Position: Chr04:50895847..50895957 (+ strand)
Length: 111
Type: CDS
Position: Chr04:50896397..50896488 (+ strand)
Length: 92
Type: CDS
Position: Chr04:50896817..50896901 (+ strand)
Length: 85
Type: CDS
Position: Chr04:50897760..50898122 (+ strand)
Length: 363
Type: CDS
Position: Chr04:50898123..50898366 (+ strand)
Length: 244
Type: three_prime_UTR


>Vigan.04G395100.01
AAATTATTTA CCTTGAAAAA AAAACAAATA AATTAGGTGT ACCGTTCAAC CCTAAACCCA GGCTTTTATG AAGAAGGCAA
TATTGTTGAT GTACCTCTGC AACTCTATAA CAGACACAAC TTAAATGGAG AGCAGTGCGG CCATGGATGT TGAGGAGCAA
CCTTCACCCA ATTCCACCAA CGTAAAACGA TTCGGCCTTA AAAACTCTAT TCAAACCAAC TTCGGCGATG ACTATGTTTT
CCAAATTGTC CCAAAGGATG ATTGGAGTGC AATGGCGGTT TCACTGTCAA CGAGCGCAGT GAAACTATAT TCACCTATGG
CGGGTCAATA TTTCGGAGAG TGCAAGGGTC ACACCGCAAC CATCAACCAG ATTTTATTTT CGGGTCCTTC ACACCACCAA
GTTTTGTGTT CGTGCTCTTC TGACGGCACT ATTAGAGCTT GGGACACACG CACATTTCAG CAGGTTTCTT GCATCAATGC
GGGTTCTTCG CAGGAGGTTT TCAGCTTCTG TCTTGGAGGA ACTAGTGGGA ATTTAGTTGC CGCCGGGTGT AAATCGCAGA
TACTGTTCTG GGATTGGAGA AATATGAAGC AAATTGCATG CCTGGAAGAC TCTCATGTAG ATGATGTCAC TCAGGTTCAT
TTTGTCCCCA ACGAACAAGG AAAGCTTATT TCTGCTTCAG TAGATGGGTT GATCTGCACG TTTGATACCA CTGGAGATAT
CAATGATGAT GATCATCTAG AGTCAGTGAT TAATATGGGG ACTTCAATTG CAAAGGTGGG GATTTTTGGA GAGAGTTACC
AGAAGCTTTG GTGTTTAACA CATATTGAAA CCCTAGGTAT CTGGAACTGG AAAGATGGTA GAAATGAAGG AAACTTCTCA
GATGCACGTA CTTTAGCTTC TGAAAGTTGG AATTTGGACC ATGTTGATTA TTTCATCGAT TGCCACTACT ACAGAGAATC
TGAAAAACTA TGGGTGATTG GTGGCACTAA TGGTGGTACT ATGGGCTACT TTCCTGTAAA TTACAAAGGA GTGGCAACAA
TTGGAGGTGC AGAAGCAATT CTTGAAGGTG GGCACACAGG TGTTATTAGG AGTGTTTTAC CAATGTCAAA AATTCATTCT
AACAGTCCTA GCCAAGGCAT TTTTGGATGG TCTGGTGGAG AAGATGGTCG GCTATGTTGT TGGCTATCTG ATGATTCCTC
TGAATCAAAT CGATCTTGGA TTTCAAGCAC ATTGATTATG AGGCCAGAAA AAGCTCGCAA GAAAAATCGT CATCAACCCT
ACTAGCAAGA ATATTCCCAG CCATTAACTC TCAGTTCGAT ACTGAAGGAG CAATTTTTGT TTCATTAGCC AACAGTTACT
TCTATTTTCA CCTCAATTTG AGTTGAAATG CCTTGGATTT TTATAAAAAT TATGTATTTG TTGTCAGATA TGTCCTCAAC
TGCATGTAAT ATTTGTACGT TGCCCTTTTT GTTTTTCCAA AATGCACAGA TCACTTTATC CATTTTGTAA TCTTGTATTG
GTATGGAGT

>Vigan.04G395100.01
ATGGAGAGCA GTGCGGCCAT GGATGTTGAG GAGCAACCTT CACCCAATTC CACCAACGTA AAACGATTCG GCCTTAAAAA
CTCTATTCAA ACCAACTTCG GCGATGACTA TGTTTTCCAA ATTGTCCCAA AGGATGATTG GAGTGCAATG GCGGTTTCAC
TGTCAACGAG CGCAGTGAAA CTATATTCAC CTATGGCGGG TCAATATTTC GGAGAGTGCA AGGGTCACAC CGCAACCATC
AACCAGATTT TATTTTCGGG TCCTTCACAC CACCAAGTTT TGTGTTCGTG CTCTTCTGAC GGCACTATTA GAGCTTGGGA
CACACGCACA TTTCAGCAGG TTTCTTGCAT CAATGCGGGT TCTTCGCAGG AGGTTTTCAG CTTCTGTCTT GGAGGAACTA
GTGGGAATTT AGTTGCCGCC GGGTGTAAAT CGCAGATACT GTTCTGGGAT TGGAGAAATA TGAAGCAAAT TGCATGCCTG
GAAGACTCTC ATGTAGATGA TGTCACTCAG GTTCATTTTG TCCCCAACGA ACAAGGAAAG CTTATTTCTG CTTCAGTAGA
TGGGTTGATC TGCACGTTTG ATACCACTGG AGATATCAAT GATGATGATC ATCTAGAGTC AGTGATTAAT ATGGGGACTT
CAATTGCAAA GGTGGGGATT TTTGGAGAGA GTTACCAGAA GCTTTGGTGT TTAACACATA TTGAAACCCT AGGTATCTGG
AACTGGAAAG ATGGTAGAAA TGAAGGAAAC TTCTCAGATG CACGTACTTT AGCTTCTGAA AGTTGGAATT TGGACCATGT
TGATTATTTC ATCGATTGCC ACTACTACAG AGAATCTGAA AAACTATGGG TGATTGGTGG CACTAATGGT GGTACTATGG
GCTACTTTCC TGTAAATTAC AAAGGAGTGG CAACAATTGG AGGTGCAGAA GCAATTCTTG AAGGTGGGCA CACAGGTGTT
ATTAGGAGTG TTTTACCAAT GTCAAAAATT CATTCTAACA GTCCTAGCCA AGGCATTTTT GGATGGTCTG GTGGAGAAGA
TGGTCGGCTA TGTTGTTGGC TATCTGATGA TTCCTCTGAA TCAAATCGAT CTTGGATTTC AAGCACATTG ATTATGAGGC
CAGAAAAAGC TCGCAAGAAA AATCGTCATC AACCCTACTA G

>Vigan.04G395100.01
MESSAAMDVE EQPSPNSTNV KRFGLKNSIQ TNFGDDYVFQ IVPKDDWSAM AVSLSTSAVK LYSPMAGQYF GECKGHTATI
NQILFSGPSH HQVLCSCSSD GTIRAWDTRT FQQVSCINAG SSQEVFSFCL GGTSGNLVAA GCKSQILFWD WRNMKQIACL
EDSHVDDVTQ VHFVPNEQGK LISASVDGLI CTFDTTGDIN DDDHLESVIN MGTSIAKVGI FGESYQKLWC LTHIETLGIW
NWKDGRNEGN FSDARTLASE SWNLDHVDYF IDCHYYRESE KLWVIGGTNG GTMGYFPVNY KGVATIGGAE AILEGGHTGV
IRSVLPMSKI HSNSPSQGIF GWSGGEDGRL CCWLSDDSSE SNRSWISSTL IMRPEKARKK NRHQPY*