GBrowse Details

Vigan.04G395200.01

Basic Information:
Name: Vigan.04G395200.01
Multiple alignment
Variant Information
Position: Chr04:50900471..50903052 (- strand)
Length: 2582
Functional Information:
Description: Similar to U6 snRNA-associated Sm-like protein LSm4-like isoform X1. [XP_004495969.1, Cicer arietinum]
InterPro: Ribonucleoprotein LSM domain (IPR001163)
Ribonucleoprotein LSM domain, eukaryotic/archaea-type (IPR006649)
Like-Sm (LSM) domain (IPR010920)
U6 snRNA-associated Sm-like protein LSm4/Small nuclear ribonucleoprotein Sm D1/D3 (IPR027141)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:16.25,13.58,10.66,12.14,20.38,27.14,22.47,14.90
Automatic updates:
Name: NM_001352689 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max small nuclear ribonucleoprotein family protein (LOC100500134), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:50900471..50900476 (- strand)
Length: 6
Type: three_prime_UTR
Position: Chr04:50900477..50900724 (- strand)
Length: 248
Type: CDS
Position: Chr04:50901574..50901613 (- strand)
Length: 40
Type: CDS
Position: Chr04:50902381..50902458 (- strand)
Length: 78
Type: CDS
Position: Chr04:50902543..50902641 (- strand)
Length: 99
Type: CDS
Position: Chr04:50902801..50902803 (- strand)
Length: 3
Type: CDS
Position: Chr04:50902804..50903052 (- strand)
Length: 249
Type: five_prime_UTR


>Vigan.04G395200.01
ACATGGTAAG CACCTCATTT TCTCCAACCC AGTTCTTTGA AAGCGCTAAC TTTAACATTT TAAATCGGAA ACAAACCTCA
CTAGGATTCA ACATCCCCCA ACTCGTCGTA TAATCTGAAG CTCTAGGGTA ACCGTTACTG TTATTTAACC TTACATTATA
CTGTATATGA TTTGACCTTT TTACCCCCAT TTTGTGTAAA CTCCTTGCAG CTTCCTCTCT CCCTTCTCAA AACTGCCCAA
GGCCACCCAA TGTTGGTAGA ACTGAAAAAT GGAGAGACTT ATAACGGCCA TTTGGTTAAT TGCGATACAT GGATGAACAT
CCATCTCCGA GAAGTCATTT GCACGTCTAA AGATGGAGAT AGATTTTGGA GGATGCCTGA ATGCTACATA CGAGGCAATA
CAATCAAGTA CCTTCGAGTT CCTGATGAGG TTATTGACAA AGTTCAAGAA GAAACCAAAA CCCGAGCAGA TCGTAAACCA
CCTGGTGTGG GGCGTGGGAG GGGAAGAGGC AGAGAAGAAG GTGCTGGTGG ACGTCAATCA AAAGGAATTG GGCGTGGTCT
TGATGATGGT GGTACCAAGG GAGCTGGAGG AGGTCGAGGC AAGGGTGGCC CTAGCGGAAA GCCTGGTGGA AATAGAGGTA
AATCACGGTC CTCTTTGCTT GTATTACCCT TTCTTCAATC ATTTGTAGAT TCTCTCCTAT ACTTCACCAT GCCATGATTT
AAA

>Vigan.04G395200.01
ATGTTGGTAG AACTGAAAAA TGGAGAGACT TATAACGGCC ATTTGGTTAA TTGCGATACA TGGATGAACA TCCATCTCCG
AGAAGTCATT TGCACGTCTA AAGATGGAGA TAGATTTTGG AGGATGCCTG AATGCTACAT ACGAGGCAAT ACAATCAAGT
ACCTTCGAGT TCCTGATGAG GTTATTGACA AAGTTCAAGA AGAAACCAAA ACCCGAGCAG ATCGTAAACC ACCTGGTGTG
GGGCGTGGGA GGGGAAGAGG CAGAGAAGAA GGTGCTGGTG GACGTCAATC AAAAGGAATT GGGCGTGGTC TTGATGATGG
TGGTACCAAG GGAGCTGGAG GAGGTCGAGG CAAGGGTGGC CCTAGCGGAA AGCCTGGTGG AAATAGAGGT AAATCACGGT
CCTCTTTGCT TGTATTACCC TTTCTTCAAT CATTTGTAGA TTCTCTCCTA TACTTCACCA TGCCATGA

>Vigan.04G395200.01
MLVELKNGET YNGHLVNCDT WMNIHLREVI CTSKDGDRFW RMPECYIRGN TIKYLRVPDE VIDKVQEETK TRADRKPPGV
GRGRGRGREE GAGGRQSKGI GRGLDDGGTK GAGGGRGKGG PSGKPGGNRG KSRSSLLVLP FLQSFVDSLL YFTMP*