GBrowse Details

Vigan.04G396000.01

Basic Information:
Name: Vigan.04G396000.01
Multiple alignment
Variant Information
Position: Chr04:50936620..50939534 (- strand)
Length: 2915
Functional Information:
Description: Similar to Uncharacterized protein. [I1NB44, Glycine max]
GO: Biological Process: folic acid-containing compound biosynthetic process (GO:0009396)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: catalytic activity (GO:0003824)
Molecular Function: methylenetetrahydrofolate dehydrogenase (NADP+) activity (GO:0004488)
InterPro: Tetrahydrofolate dehydrogenase/cyclohydrolase (IPR000672)
NAD(P)-binding domain (IPR016040)
Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain (IPR020630)
Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain (IPR020631)
Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site (IPR020867)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:91.60,47.48,27.99,39.64,38.89,79.95,38.37,23.68
Arabidopsis thaliana homolog: AT3G12290.1
Automatic updates:
Name: NM_001252894 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max c-1-tetrahydrofolate synthase, cytoplasmic-like (LOC100783652), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:50936620..50937178 (- strand)
Length: 559
Type: three_prime_UTR
Position: Chr04:50937179..50937415 (- strand)
Length: 237
Type: CDS
Position: Chr04:50937886..50938098 (- strand)
Length: 213
Type: CDS
Position: Chr04:50938759..50938916 (- strand)
Length: 158
Type: CDS
Position: Chr04:50939038..50939221 (- strand)
Length: 184
Type: CDS
Position: Chr04:50939331..50939423 (- strand)
Length: 93
Type: CDS
Position: Chr04:50939424..50939534 (- strand)
Length: 111
Type: five_prime_UTR


>Vigan.04G396000.01
CTTTGTTATA ACATTGCATG AAACGACTAG TCGTCCAGAT GATTCACGTT CAGACAATCC CAAGTGATAA GAGTAATAGC
ATACACATTT CTCTCATCCT TCACCGATCA AATGGCCACC GTAATCGACG GCAAGGTCGT TGCGCAAACC ATCCGATCTG
AAATCGCCGA CGAGGTGCGC CTCCTCGCTC AAAAATACGG CAAGGTTCCA GGATTAGCAG TGGTGATAGT AGGGAGCAGG
AAGGATTCAC AAAGCTATGT GGGAATGAAG AGAAAGGCGT GCGCTGAATT GGGAATCAAA TCCTTCGATG TGGACCTTCC
AGAGCAAATA TCTCAAGCTG AGCTAATAAA GCAAGTTCAT GAGTTGAATG ATAACACTGA TGTTCATGGA ATTTTGGTTC
AGCTTCCGTT GCCTAAGCAC ATAAATGAAG AGAAAGTTCT GTCTGAAATT AGCCTTGAGA AGGATGTGGA TGGCTTTCAT
CCGTTGAACA TTGGCAAGCT TGCAATGAAA GGCAGAGACC CCCTGTTCCT TCCATGCACT CCCAAGGCAT GCCTTGAACT
ATTACAACGA AGTGGTGTAA CAATAAAGGG AAAAAAGGCA GTTGTGGTTG GCAGAAGCAA CATAGTTGGA TTACCAGCTT
CATTGCTGCT TTTGAAAGCA GATGCTACAG TTACTATTGT ACATTCACAC ACAAGTCAAC CAGAAAATAT CATACGTGAA
GCGGATATTG TTATTGCAGC AGCTGGACAG CCAAAGATGA TCAAAGGAAG TTGGATCAAA CCTGGAGCGG CAGTCATAGA
TGTTGGAACA AATGCTGTTG ATGACCCAAC GAGGAAGTCT GGTTACAGGC TTGTTGGAGA TGTAGATTTT GAGGAAGCTT
CTAAAACTGC AGGTTGGATT ACTCCTGTTC CTGGTGGTGT AGGTCCAATG ACGGTCACAA TGTTGTTGAA GAATACTTTG
GAGGGAGCTA AGCGTTATAT TGAGCAAAGT AATTGATCTT TTTTGACTTT GAATAAGGCA TTTCCTCTTA GTTGAAATTT
CTTTGAGAAT ACTCAAAGTG TGGTTTAAGG TTGACCTATG TATTGTATTT TGTAACACAA GGATCGGTCT TCAAAATGGA
AAAGTGGGAT TGGTTCAAGC AAAACTATAT ATTTGCCTTT TCAATATCTT CCGTTTCCTC CCGTGTCTGT CCCTCTGGCT
TATATCCCCG ACTGTGCTCA CATTGTACAA TTTTTCAGAA GAAAAACTTT TGATGTGGGT ATTGAGCATG TTTTAGTTTC
TTTAGTACAA TTCTCTAAGC TTATTATTGA GAAGGATTCC CACACAGCCA TTAAGTCGGT CAGTAATGGC TGCCATATTC
ATAACTCTTG TTACCACCTG GTAAGGACCA TCTATGGGTT ACTCGTGCTC ATCCTATCAC ATATGGTACT TCTAATGATT
CACGGAGCAA AATTTTTTAC TTCTCTCCGG ATATTCTTGG TCTTCCTCTG TTGTATGATG CTGCTGGCAC TGTTTTTAGG
CAGTAGTTGT TTTTTGTTTC TGTTTTTCAT AATTT

>Vigan.04G396000.01
ATGGCCACCG TAATCGACGG CAAGGTCGTT GCGCAAACCA TCCGATCTGA AATCGCCGAC GAGGTGCGCC TCCTCGCTCA
AAAATACGGC AAGGTTCCAG GATTAGCAGT GGTGATAGTA GGGAGCAGGA AGGATTCACA AAGCTATGTG GGAATGAAGA
GAAAGGCGTG CGCTGAATTG GGAATCAAAT CCTTCGATGT GGACCTTCCA GAGCAAATAT CTCAAGCTGA GCTAATAAAG
CAAGTTCATG AGTTGAATGA TAACACTGAT GTTCATGGAA TTTTGGTTCA GCTTCCGTTG CCTAAGCACA TAAATGAAGA
GAAAGTTCTG TCTGAAATTA GCCTTGAGAA GGATGTGGAT GGCTTTCATC CGTTGAACAT TGGCAAGCTT GCAATGAAAG
GCAGAGACCC CCTGTTCCTT CCATGCACTC CCAAGGCATG CCTTGAACTA TTACAACGAA GTGGTGTAAC AATAAAGGGA
AAAAAGGCAG TTGTGGTTGG CAGAAGCAAC ATAGTTGGAT TACCAGCTTC ATTGCTGCTT TTGAAAGCAG ATGCTACAGT
TACTATTGTA CATTCACACA CAAGTCAACC AGAAAATATC ATACGTGAAG CGGATATTGT TATTGCAGCA GCTGGACAGC
CAAAGATGAT CAAAGGAAGT TGGATCAAAC CTGGAGCGGC AGTCATAGAT GTTGGAACAA ATGCTGTTGA TGACCCAACG
AGGAAGTCTG GTTACAGGCT TGTTGGAGAT GTAGATTTTG AGGAAGCTTC TAAAACTGCA GGTTGGATTA CTCCTGTTCC
TGGTGGTGTA GGTCCAATGA CGGTCACAAT GTTGTTGAAG AATACTTTGG AGGGAGCTAA GCGTTATATT GAGCAAAGTA
ATTGA

>Vigan.04G396000.01
MATVIDGKVV AQTIRSEIAD EVRLLAQKYG KVPGLAVVIV GSRKDSQSYV GMKRKACAEL GIKSFDVDLP EQISQAELIK
QVHELNDNTD VHGILVQLPL PKHINEEKVL SEISLEKDVD GFHPLNIGKL AMKGRDPLFL PCTPKACLEL LQRSGVTIKG
KKAVVVGRSN IVGLPASLLL LKADATVTIV HSHTSQPENI IREADIVIAA AGQPKMIKGS WIKPGAAVID VGTNAVDDPT
RKSGYRLVGD VDFEEASKTA GWITPVPGGV GPMTVTMLLK NTLEGAKRYI EQSN*