VIGGS:GBrowse

Vigan.04G397800.01

Basic Information:

Name:	Vigan.04G397800.01 Multiple alignment Variant Information
Position:	Chr04:51055508..51057586 (+ strand)
Length:	2079

Functional Information:

Description:	Similar to Ribosomal protein L19. [E9NZT0, Phaseolus vulgaris]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L19/L19e domain (IPR000196)
	Ribosomal protein L19/L19e, domain 1 (IPR015972)
	Ribosomal protein L19/L19e, domain 3 (IPR015974)
	Ribosomal protein L19/L19e conserved site (IPR023638)
	Ribosomal protein L19/L19e (IPR027547)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:203.34,269.37,108.78,75.69,167.93,228.34,108.59,78.06
Arabidopsis thaliana homolog:	AT3G16780.1

Automatic updates:

Name:	NM_001250460 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100527275 (LOC100527275), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:51055508..51055690 (+ strand)
Length:	183
Type:	five_prime_UTR

Position:	Chr04:51055691..51055802 (+ strand)
Length:	112
Type:	CDS

Position:	Chr04:51056170..51056292 (+ strand)
Length:	123
Type:	CDS

Position:	Chr04:51056763..51057076 (+ strand)
Length:	314
Type:	CDS

Position:	Chr04:51057208..51057263 (+ strand)
Length:	56
Type:	CDS

Position:	Chr04:51057352..51057376 (+ strand)
Length:	25
Type:	CDS

Position:	Chr04:51057377..51057586 (+ strand)
Length:	210
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G397800.01
GGTTAGGTTA ACAAGCTAAA GTGCTGGGCC CATATGACAG TCCACAAACA ACAAATGGTC TGGGTCTGAT TAGGCTCAGC
CCAATCTTGA TATTTGGGCT TTAGACATTG TATTTATACA CTGACAACAA AAAATGAAAT TAGGGTTTTG TTCTCCCCGT
TGCAGCATCA GAGAAGGGGA AACATGGTTT CGCTGAAACT GCAGAAGCGG CTTGCAGCCA GCGTGCTCAA GTGCGGAAGA
GGAAAGGTGT GGCTTGACCC CAATGAAGTC AACGACATCT CCATGGCCAA TTCTCGGCAA AACATCAGGA AGTTGGTTAA
GGATGGGTTT ATCATTAGGA AGCCAACCAA GATTCACTCC CGATCACGTG CTCGTAGGAT GAAGGAGGCA AAGAGGAAGG
GCCGTCATTC TGGATATGGT AAGCGTAAGG GTACAAGGGA GGCAAGGCTT CCCACAAAGA TACTCTGGAT GAGAAGGATG
CGTGTGCTCA GACGGTTGCT TCGCAAGTAC AGGGAGTCAA AGAAAATTGA CAAACACATG TACCATGATA TGTACATGAA
GGTCAAAGGT AATGTTTTCA AAAACAAGAG GGTTTTGATG GAGAGCATTC ACAAGTCTAA GGCTGAGAAG GCCAGAGAGA
AGACCTTGTC TGATCAGTTT GAGGCTAAGC GTGCAAAGAA CAAGGCTAGC AGGGAACGGA AAATTGCACG GAGGGAGGAG
CGCTTAGCCC AAGGTCCCGT TGATAAGGCA TCTACAGCAC CCAGTGCCCC AGCACCCCAA CCTGCCCAAG CGCCAAAGAA
ATCCAAGAAG TGAGTATTTT TGATGAATCT TTGACTGTAC CCGAAATTTT CTCTGCAAAA ATAGTTACGA GGAGTATGTT
TCTAAACTTT TTTTTGTAAG TTTTGTTTGT ACGAGAACAT TTTATCTTGT ATACTTTAAA CTATATGTTT TGTCAGTTTT
TACTGTTTTA CGTATTAAGA TTCACTAGTT TTTTGAAGTA CTTGTGTTAT TCTTCTACTC GCG

[show][hide][copy]CDS

>Vigan.04G397800.01
ATGGTTTCGC TGAAACTGCA GAAGCGGCTT GCAGCCAGCG TGCTCAAGTG CGGAAGAGGA AAGGTGTGGC TTGACCCCAA
TGAAGTCAAC GACATCTCCA TGGCCAATTC TCGGCAAAAC ATCAGGAAGT TGGTTAAGGA TGGGTTTATC ATTAGGAAGC
CAACCAAGAT TCACTCCCGA TCACGTGCTC GTAGGATGAA GGAGGCAAAG AGGAAGGGCC GTCATTCTGG ATATGGTAAG
CGTAAGGGTA CAAGGGAGGC AAGGCTTCCC ACAAAGATAC TCTGGATGAG AAGGATGCGT GTGCTCAGAC GGTTGCTTCG
CAAGTACAGG GAGTCAAAGA AAATTGACAA ACACATGTAC CATGATATGT ACATGAAGGT CAAAGGTAAT GTTTTCAAAA
ACAAGAGGGT TTTGATGGAG AGCATTCACA AGTCTAAGGC TGAGAAGGCC AGAGAGAAGA CCTTGTCTGA TCAGTTTGAG
GCTAAGCGTG CAAAGAACAA GGCTAGCAGG GAACGGAAAA TTGCACGGAG GGAGGAGCGC TTAGCCCAAG GTCCCGTTGA
TAAGGCATCT ACAGCACCCA GTGCCCCAGC ACCCCAACCT GCCCAAGCGC CAAAGAAATC CAAGAAGTGA

[show][hide][copy]PROTEIN

>Vigan.04G397800.01
MVSLKLQKRL AASVLKCGRG KVWLDPNEVN DISMANSRQN IRKLVKDGFI IRKPTKIHSR SRARRMKEAK RKGRHSGYGK
RKGTREARLP TKILWMRRMR VLRRLLRKYR ESKKIDKHMY HDMYMKVKGN VFKNKRVLME SIHKSKAEKA REKTLSDQFE
AKRAKNKASR ERKIARREER LAQGPVDKAS TAPSAPAPQP AQAPKKSKK*