VIGGS:GBrowse

Vigan.04G401000.01

Basic Information:

Name:	Vigan.04G401000.01 Multiple alignment Variant Information
Position:	Chr04:51296853..51298906 (+ strand)
Length:	2054

Functional Information:

Description:	Similar to Uncharacterized protein. [I3SWF1, Lotus japonicus]
GO:	Biological Process: translation (GO:0006412)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: ribosome (GO:0005840)
	Molecular Function: structural constituent of ribosome (GO:0003735)
InterPro:	Ribosomal protein L21e (IPR001147)
	Translation protein SH3-like domain (IPR008991)
	Ribosomal protein L21e, conserved site (IPR018259)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:133.52,182.20,56.85,40.40,122.91,263.20,109.25,56.66
Arabidopsis thaliana homolog:	AT1G57660.1, AT1G57860.1

Automatic updates:

Name:	NM_001249158 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max uncharacterized LOC100500046 (LOC100500046), mRNA.
PubMed ID:	-
Status:	Known Variant

Name:	NM_001251281 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max putative 60S ribosomal protein L21 (LOC100305629), mRNA.
PubMed ID:	18927222 NCBI(pubmed)
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:51296853..51296927 (+ strand)
Length:	75
Type:	five_prime_UTR

Position:	Chr04:51296928..51297164 (+ strand)
Length:	237
Type:	CDS

Position:	Chr04:51297507..51297764 (+ strand)
Length:	258
Type:	CDS

Position:	Chr04:51297765..51298906 (+ strand)
Length:	1142
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G401000.01
GTTTATTAAG ACTGATAGCT CCTTCTACCC CGAGCCGAGC GCAGAGAGTG AGAGAGAAAC CCTAGGTGAG GAACAATGCC
AGCTGGTCAC GGTTTGAGAT CTCGCACGAG AGATTCATTC TCTCGTCCCT TCAGGAAGAA GGGAACCATC GCCCTCACAA
CTTATCTCCG AACATACCAC ATCGGCGATT ACGTTGATGT CAAGGTTAAC GGCGCCGTCC ACAAGGGTAT GCCTCACAAG
TTTTACCATG GCCGCACCGG TCGTGTTTGG AATGTCACCA AACGCGCCAT TGGTGTCGAG GTTAACAAAC AGGTGGGGAA
CAGAATTATT AGAAAGAGGA TTCATGTCCG TGTTGAGCAT GTGATGCCTT CAAGGTGCAC TGAGGAGTTC CGTTTGAGGA
AGATCAAGAA TGATCAACTA AAGGCGGATG CTAAGGCAAA GGGGGAGAAA ATTAGCACCA AGAGACAACC TGAGGGCCCC
AAACCAGGTT TCATGGTGGA AGGAGCTACA TTAGAAACTG TCACTCCCAT TCCTTATGAC GTGGTTAATG ATCTTAAAGG
AGGATATTAG TAATTTTTAC TGTTTGTTGG TTTGCAAGTT GTTTTTTAGT TTTGGATTAC TCGTTCTAAG GCCACTTGTA
AACAATTTTG ATGGTTTGAT TCTCCAAATA CAATTATATG TTCTGTTTTA TTCGGTATTT AATGAGCTTT ACATCCTGTG
ATTTGCGTAT AATGTTCTTC ATGATTAGCA ATGGTTATAT TTGATTTGCT AGTATGGATT TATAAGCTGT TTGAGTTTTC
TTTTTTAAAA TGTCATTTCC ATTATATTAT TGTTCAGGAG CCCTGGATAA ATGGTCGAAA GTGATTGAAT ACTAGAAAGG
AATTTTTGGT AAATATCTGT GCTCTGAATT GTGTTTTTTA CCAAGCTTCT GGCACAGTGT TATTAAGAGA GTTTGAGGCC
AGCGAAATCA TTTAGACAGC TCTTGATTGA ATTGATTTGT TTTATAATAT TGTATATTTA GTTATCCCAA AAAGAATTGT
AATCTAAGAA ACCTTGAGAT TGGTTTTTCG AATGCCATTA TGGTAGTTTG ATGAATTAGA GGTATAGATT GGTTGACCCT
TAATCAAGTG GCTGTTCTCA TACTTCAAAT TCGTTTTGTA CATATGTTGT GGGCAGACAT TGTGTCAAAT ATTCTAGTTG
TGTTTGATCT CTACTAGGAT GGCATTATGT CACATGACTC GGTCTCTTTC AAACTCCTTC AAAGAATAAA CCCTATGGCC
CTTCTGATCA TTATGCATTA TTGTGCAGTT TGTGTCTTAA ATTCAGTTAT GTATTAGTTC TTATTGGTGT ACTTATTTTA
AGCACTGAAG TGTGAAATGG AACAGTCATC GGGATGAAAT TATTGTTTTC ACATTTTTAA GAAGTAACAT GAGGGAATAC
ATTTTATAGA GTTGATCTTG AAGAATATGT TTTCTGCATG CTTATTCAAA ATTATTTAAT ATGAGAAGGT TGAAGGTGAA
GGATGGAATT TAGAGAATGG AAATTTTCTC ATGGCTATAC TAGTCAGTCA TAGACTCATG TCTGTTGACT CATGTTTATG
TTTGTTACAT TATTGATTTC CAAACATGTT GAGTCATTCT TAAAATGTAA TTGCCAACGA TTAATTTGAT CAAAGAAAAT
TTAACTTTTA CTATTAAATG AACTAATATA AT

[show][hide][copy]CDS

>Vigan.04G401000.01
ATGCCAGCTG GTCACGGTTT GAGATCTCGC ACGAGAGATT CATTCTCTCG TCCCTTCAGG AAGAAGGGAA CCATCGCCCT
CACAACTTAT CTCCGAACAT ACCACATCGG CGATTACGTT GATGTCAAGG TTAACGGCGC CGTCCACAAG GGTATGCCTC
ACAAGTTTTA CCATGGCCGC ACCGGTCGTG TTTGGAATGT CACCAAACGC GCCATTGGTG TCGAGGTTAA CAAACAGGTG
GGGAACAGAA TTATTAGAAA GAGGATTCAT GTCCGTGTTG AGCATGTGAT GCCTTCAAGG TGCACTGAGG AGTTCCGTTT
GAGGAAGATC AAGAATGATC AACTAAAGGC GGATGCTAAG GCAAAGGGGG AGAAAATTAG CACCAAGAGA CAACCTGAGG
GCCCCAAACC AGGTTTCATG GTGGAAGGAG CTACATTAGA AACTGTCACT CCCATTCCTT ATGACGTGGT TAATGATCTT
AAAGGAGGAT ATTAG

[show][hide][copy]PROTEIN

>Vigan.04G401000.01
MPAGHGLRSR TRDSFSRPFR KKGTIALTTY LRTYHIGDYV DVKVNGAVHK GMPHKFYHGR TGRVWNVTKR AIGVEVNKQV
GNRIIRKRIH VRVEHVMPSR CTEEFRLRKI KNDQLKADAK AKGEKISTKR QPEGPKPGFM VEGATLETVT PIPYDVVNDL
KGGY*