GBrowse Details

Vigan.04G405300.01

Basic Information:
Name: Vigan.04G405300.01
Multiple alignment
Variant Information
Position: Chr04:51664255..51668457 (- strand)
Length: 4203
Functional Information:
Description: Similar to Uncharacterized protein. [I1LMP2, Glycine max]
GO: Molecular Function: protein binding (GO:0005515)
InterPro: JAB/MPN domain (IPR000555)
Rpn11/EIF3F C-terminal domain (IPR024969)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:88.58,52.05,62.69,42.96,77.51,37.94,68.36,46.83
Arabidopsis thaliana homolog: AT3G11270.1, AT5G05780.1
Automatic updates:
Name: NM_001255942 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max probable 26S proteasome non-ATPase regulatory subunit 7-like (LOC100815353), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:51664255..51664609 (- strand)
Length: 355
Type: three_prime_UTR
Position: Chr04:51664610..51664678 (- strand)
Length: 69
Type: CDS
Position: Chr04:51665470..51665555 (- strand)
Length: 86
Type: CDS
Position: Chr04:51665634..51665691 (- strand)
Length: 58
Type: CDS
Position: Chr04:51665960..51666082 (- strand)
Length: 123
Type: CDS
Position: Chr04:51666236..51666294 (- strand)
Length: 59
Type: CDS
Position: Chr04:51666434..51666509 (- strand)
Length: 76
Type: CDS
Position: Chr04:51666664..51666760 (- strand)
Length: 97
Type: CDS
Position: Chr04:51666887..51666968 (- strand)
Length: 82
Type: CDS
Position: Chr04:51667051..51667143 (- strand)
Length: 93
Type: CDS
Position: Chr04:51668116..51668302 (- strand)
Length: 187
Type: CDS
Position: Chr04:51668303..51668457 (- strand)
Length: 155
Type: five_prime_UTR


>Vigan.04G405300.01
AACACAACAC GCAAAGAAAA GTAGAAGAAA AGGCAAAGGA GTTGAGTTAG GCGCAGAAGA GAAGAGACGA GAGGAGGGAG
AAAAGAATTG AAGTTGGAAG ACGAAGAAGA AGAAGAGGAG GAAGATAAAG GGAAATTTGA GTTTCTGGAA TTGCAATGGA
CGTGATAAAG ACGCAGCAAA TCTCATCTCG ACCAATCGAG AAGGTCGTGG TTCATCCGCT CGTGCTTCTT AGCATCGTCG
ACAACTACAA TAGAGTCGCC AAGGACACGC GCAAGCGCGT CGTCGGCGTT TTGCTTGGCT CATCTTTCAA AGGCACCGTC
GACGTTACCA ACAGCTACGC CGTGCCGTTT GAAGAAGATG ACAAGGATCC GAGCATCTGG TTTCTTGACC ACAATTACCA
TGAATCAATG TTTTCCATGT TTAAAAGAAT AAATGCAAAG GAGCATGTTG TGGGGTGGTA TAGCACAGGT CCAAAGCTGC
GTGAAAATGA CCTTGACATT CATGGCTTAT TTAATGATTA TGTTCCAAAT CCTGTCTTGG TTATCATTGA TGTTGAACCC
AAGGAATTGG GAATCCCAAC AAAAGCATAT TACGCTGTAG AAGAGGTTAA AGAGAATGCC ACCCAAAAAA GCCAAAAGGT
CTTTGTTCAT GTGCCATCCG AGATTGCAGC TCATGAAGTT GAAGAAATAG GAGTCGAACA TTTACTTAGA GATGTAAAGG
ATACAACCAT TAGCACCCTT GCGACCGAGG TAAGTGCAAA ACTTACAGCC TTGAAGGGTT TGGATGCTAG ACTTAAAGAG
ATAAGGAGTT ACCTTGACCT GGTTATTGAT GGAAAGCTTC CCTTAAACCA TGAGATCCTG TACCATCTGC AGGACGTGTT
TAACCTGCTA CCAAATCTTA ATGTGGCTGA TCTTATCAAG GCGTTTGCAG TGAAAACCAA TGATATGATG CTGGTAATAT
ACCTCTCGTC TCTCATTAGA AGTGTAATTG CACTCCACAA CTTGATTAAC AACAAGATGC TTAACAAAGA ACATGAACGG
GCAGAAGACT CAAAGTCAGT TACCGTGCCT AGTGCAGCTG CATAAGTTTT GATGGATTGT GATGTTCGGA ACTCTCAATG
TTATTGAATA CTTGGATTAA GATTGTAACA CTTTTTTTCT TTTTCTTTTT TTTACTTTTG TCGGGTTAGA AAACTTATAC
CTAACGTGGC ATAATGATCT TTTTATGCTT GTTCAGGTGC TCCATGCTGT TTACCCTTCA TTACTTTGCT CAATTTCTTT
GTTTGGTAGT TTTGGAAACG GCTGTTAAAG AATTCGTGAT TACAAACAAA TTTAGATTTC AAAAATATCT TTTGCCCTGC
TTAATTTTTT TCTGTTTTTT AATTGACCGG AATCCGCTGA ATCCCGTACA TTGTGTTTAG TTGAGACTAG GAAGAAATCA


>Vigan.04G405300.01
ATGGACGTGA TAAAGACGCA GCAAATCTCA TCTCGACCAA TCGAGAAGGT CGTGGTTCAT CCGCTCGTGC TTCTTAGCAT
CGTCGACAAC TACAATAGAG TCGCCAAGGA CACGCGCAAG CGCGTCGTCG GCGTTTTGCT TGGCTCATCT TTCAAAGGCA
CCGTCGACGT TACCAACAGC TACGCCGTGC CGTTTGAAGA AGATGACAAG GATCCGAGCA TCTGGTTTCT TGACCACAAT
TACCATGAAT CAATGTTTTC CATGTTTAAA AGAATAAATG CAAAGGAGCA TGTTGTGGGG TGGTATAGCA CAGGTCCAAA
GCTGCGTGAA AATGACCTTG ACATTCATGG CTTATTTAAT GATTATGTTC CAAATCCTGT CTTGGTTATC ATTGATGTTG
AACCCAAGGA ATTGGGAATC CCAACAAAAG CATATTACGC TGTAGAAGAG GTTAAAGAGA ATGCCACCCA AAAAAGCCAA
AAGGTCTTTG TTCATGTGCC ATCCGAGATT GCAGCTCATG AAGTTGAAGA AATAGGAGTC GAACATTTAC TTAGAGATGT
AAAGGATACA ACCATTAGCA CCCTTGCGAC CGAGGTAAGT GCAAAACTTA CAGCCTTGAA GGGTTTGGAT GCTAGACTTA
AAGAGATAAG GAGTTACCTT GACCTGGTTA TTGATGGAAA GCTTCCCTTA AACCATGAGA TCCTGTACCA TCTGCAGGAC
GTGTTTAACC TGCTACCAAA TCTTAATGTG GCTGATCTTA TCAAGGCGTT TGCAGTGAAA ACCAATGATA TGATGCTGGT
AATATACCTC TCGTCTCTCA TTAGAAGTGT AATTGCACTC CACAACTTGA TTAACAACAA GATGCTTAAC AAAGAACATG
AACGGGCAGA AGACTCAAAG TCAGTTACCG TGCCTAGTGC AGCTGCATAA 

>Vigan.04G405300.01
MDVIKTQQIS SRPIEKVVVH PLVLLSIVDN YNRVAKDTRK RVVGVLLGSS FKGTVDVTNS YAVPFEEDDK DPSIWFLDHN
YHESMFSMFK RINAKEHVVG WYSTGPKLRE NDLDIHGLFN DYVPNPVLVI IDVEPKELGI PTKAYYAVEE VKENATQKSQ
KVFVHVPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVS AKLTALKGLD ARLKEIRSYL DLVIDGKLPL NHEILYHLQD
VFNLLPNLNV ADLIKAFAVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHERAEDSK SVTVPSAAA*