GBrowse Details

Vigan.04G406800.01

Basic Information:
Name: Vigan.04G406800.01
Multiple alignment
Variant Information
Position: Chr04:51777901..51783754 (+ strand)
Length: 5854
Functional Information:
Description: Similar to Cytochrome P450. [Q9LKH7, Vigna radiata]
GO: Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: iron ion binding (GO:0005506)
Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen (GO:0016705)
Molecular Function: heme binding (GO:0020037)
InterPro: Cytochrome P450 (IPR001128)
Cytochrome P450, E-class, group I (IPR002401)
Cytochrome P450, conserved site (IPR017972)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:19.51,91.92,6.61,39.90,12.34,19.53,3.79,8.86
Arabidopsis thaliana homolog: AT5G05690.1
Automatic updates:
Name: NM_001317278 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata cytochrome P450 90A1-like (LOC106757945), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:51777901..51778143 (+ strand)
Length: 243
Type: five_prime_UTR
Position: Chr04:51778144..51778656 (+ strand)
Length: 513
Type: CDS
Position: Chr04:51779928..51780077 (+ strand)
Length: 150
Type: CDS
Position: Chr04:51780169..51780417 (+ strand)
Length: 249
Type: CDS
Position: Chr04:51782633..51782719 (+ strand)
Length: 87
Type: CDS
Position: Chr04:51782867..51782945 (+ strand)
Length: 79
Type: CDS
Position: Chr04:51783046..51783152 (+ strand)
Length: 107
Type: CDS
Position: Chr04:51783237..51783370 (+ strand)
Length: 134
Type: CDS
Position: Chr04:51783462..51783564 (+ strand)
Length: 103
Type: CDS
Position: Chr04:51783565..51783754 (+ strand)
Length: 190
Type: three_prime_UTR


>Vigan.04G406800.01
AGATAATTTG TTTGGCCAGA ACAGATCCTT TTCTTCTTCA TCTTCTAGAC TCTGAGCACT GGGCACTCAC ACACAGAGGT
ACCCCCACCC CCTCGTGGGC TCCTCCGCTC TTCTATTAAT ACCTCTCTCT CTCTTTCTCT CTCTCTCTCT CTCTCTCTCT
CTCTCTCTCC AACCATTCAA AACGCTTTGG TTGGGTTTAT ATCCACAACA CTTCTTCTTT TCTCTACTTC TTCTGTTGCA
GCAATGGTTT CTCTGCCAAC ACTCCTCCTA TTGTTCGCCG CCTCCGCCGC GATCTTCCTC CATCGCGCGT TGAGCCGGCG
GAAGCTTCGG CTGCCGCCTG GGAGCTATGG CCTGCCGTTC ATCGGCGAGA CGCTGCAGCT GATATCTGCG TACAAGAGTG
CCAATCCGGA GCCGTTCATG GACGAGCGCG TGAGGCGCTA CGGGTCGATC TTCATGACAC ACGTATTCGG CGAGGCGACG
GTGTTCTCGG CGGACCCGGA GCTGAACCGG TTCATTCTAC AGAACGAAGG GAAGCTGTTG GATTGCAGTT ACCCCGGTTC
CATATCGAAC CTGCTCGGAA AACACTCTCT TCTCTTGATG AAAGGCGCTC TGCACAAGAG AATGCACTCG CTCACCATGA
GCTTCGCCAA CTCCTCCATC CTCAAGGATC ACCTTCTCCA CGACATCGAC CGCCTCATCG GCCTCAACCT CGATACCTGG
TCCGATCGTG TTACTCTCAT GGACCAGGCA AAAAAGATAA CGTTTGAGCT AACAGTGAAG CAATTGATGA GCTTTGACCC
TGATCAATGG ACTGAAAGTT TAAGGAAAGA GTATGTTCTT GTCATTGAAG GCTTCTTCAC TCTCCCTTTA CCTCTCTTCT
CCACCACATA CCGGAGAGCC ATCAAGGCAA GAACAAAGGT GGCAGAGGCA CTGACGTTGG TAGTGAGGCA GAGGCGAGAA
GAGTATAACG AAGGGAAAGG GAAAAAGAGT GACATGCTAG GGGCACTGTT GGCCTCCGGT GACCACTTTT CTGACGAGCA
AATAGTGGAT TTCCTTTTGG CTTTGCTCGT CGCCGGTTAC GAGACCACCT CTACCATAAT GACTCTTGCA GTCAAGTTCC
TCACTGAGAC TCCTCTGGCT TTGGCACAGC TCAAGGAAGA GCATGACCAA ATCAGAGCAA GGAGTGACCC CGGGGCTCCA
CTGGAATGGA CAGATTACAA GTCAATGGTT TTTACCCAAC ATGTTGTGAA TGAGACCTTG AGGGTGGCAA ACATAATTGG
TGGGATATTT AGAAGAGCAA CTACAGACAT CAACATAAAA GGTTATACTA TTCCTAAGGG ATGGAAGGTC TTTGCATCAT
TTCGTGCTGT ACATCTGAAT CCTGAATATT ACAAAGATGC ACGAACCTTC AACCCCTGGA GATGGCAGAG TAACTCATCG
GAAGCAGCAA ACCCTGCAAA TGTTTATACA CCTTTTGGTG GAGGGCCACG GTTGTGCCCT GGTTATGAGC TAGCCAGAGT
TGTACTTTCT GTCTTCCTTC ACCGCTTTGT CACCCGCTTC AGTTGGGTTC CTGCCGAGGA AGATAAGTTG GTGTTTTTCC
CAACAACTAG GACGCAGAAG AGGTACCCTA TTATTGTCAA GCGTAGAAGT GCAAACCATG TATAGCAACA TGAGAAATTA
AGACAGTAAG AGGTAGAGAA GACACAGAGG AAGCTCAGCG TAGATCAATT TAATAAGTTC ATCTTCATCA TATATGAATA
AATAATTAAA TTATTTTTCA GTTTAGCAAT TCATATATGA TTTTAGTTAG TTCTTTTTCC AAAAAGTTTG CAATAAATTT
GGCACAGTTT CGACA

>Vigan.04G406800.01
ATGGTTTCTC TGCCAACACT CCTCCTATTG TTCGCCGCCT CCGCCGCGAT CTTCCTCCAT CGCGCGTTGA GCCGGCGGAA
GCTTCGGCTG CCGCCTGGGA GCTATGGCCT GCCGTTCATC GGCGAGACGC TGCAGCTGAT ATCTGCGTAC AAGAGTGCCA
ATCCGGAGCC GTTCATGGAC GAGCGCGTGA GGCGCTACGG GTCGATCTTC ATGACACACG TATTCGGCGA GGCGACGGTG
TTCTCGGCGG ACCCGGAGCT GAACCGGTTC ATTCTACAGA ACGAAGGGAA GCTGTTGGAT TGCAGTTACC CCGGTTCCAT
ATCGAACCTG CTCGGAAAAC ACTCTCTTCT CTTGATGAAA GGCGCTCTGC ACAAGAGAAT GCACTCGCTC ACCATGAGCT
TCGCCAACTC CTCCATCCTC AAGGATCACC TTCTCCACGA CATCGACCGC CTCATCGGCC TCAACCTCGA TACCTGGTCC
GATCGTGTTA CTCTCATGGA CCAGGCAAAA AAGATAACGT TTGAGCTAAC AGTGAAGCAA TTGATGAGCT TTGACCCTGA
TCAATGGACT GAAAGTTTAA GGAAAGAGTA TGTTCTTGTC ATTGAAGGCT TCTTCACTCT CCCTTTACCT CTCTTCTCCA
CCACATACCG GAGAGCCATC AAGGCAAGAA CAAAGGTGGC AGAGGCACTG ACGTTGGTAG TGAGGCAGAG GCGAGAAGAG
TATAACGAAG GGAAAGGGAA AAAGAGTGAC ATGCTAGGGG CACTGTTGGC CTCCGGTGAC CACTTTTCTG ACGAGCAAAT
AGTGGATTTC CTTTTGGCTT TGCTCGTCGC CGGTTACGAG ACCACCTCTA CCATAATGAC TCTTGCAGTC AAGTTCCTCA
CTGAGACTCC TCTGGCTTTG GCACAGCTCA AGGAAGAGCA TGACCAAATC AGAGCAAGGA GTGACCCCGG GGCTCCACTG
GAATGGACAG ATTACAAGTC AATGGTTTTT ACCCAACATG TTGTGAATGA GACCTTGAGG GTGGCAAACA TAATTGGTGG
GATATTTAGA AGAGCAACTA CAGACATCAA CATAAAAGGT TATACTATTC CTAAGGGATG GAAGGTCTTT GCATCATTTC
GTGCTGTACA TCTGAATCCT GAATATTACA AAGATGCACG AACCTTCAAC CCCTGGAGAT GGCAGAGTAA CTCATCGGAA
GCAGCAAACC CTGCAAATGT TTATACACCT TTTGGTGGAG GGCCACGGTT GTGCCCTGGT TATGAGCTAG CCAGAGTTGT
ACTTTCTGTC TTCCTTCACC GCTTTGTCAC CCGCTTCAGT TGGGTTCCTG CCGAGGAAGA TAAGTTGGTG TTTTTCCCAA
CAACTAGGAC GCAGAAGAGG TACCCTATTA TTGTCAAGCG TAGAAGTGCA AACCATGTAT AG

>Vigan.04G406800.01
MVSLPTLLLL FAASAAIFLH RALSRRKLRL PPGSYGLPFI GETLQLISAY KSANPEPFMD ERVRRYGSIF MTHVFGEATV
FSADPELNRF ILQNEGKLLD CSYPGSISNL LGKHSLLLMK GALHKRMHSL TMSFANSSIL KDHLLHDIDR LIGLNLDTWS
DRVTLMDQAK KITFELTVKQ LMSFDPDQWT ESLRKEYVLV IEGFFTLPLP LFSTTYRRAI KARTKVAEAL TLVVRQRREE
YNEGKGKKSD MLGALLASGD HFSDEQIVDF LLALLVAGYE TTSTIMTLAV KFLTETPLAL AQLKEEHDQI RARSDPGAPL
EWTDYKSMVF TQHVVNETLR VANIIGGIFR RATTDINIKG YTIPKGWKVF ASFRAVHLNP EYYKDARTFN PWRWQSNSSE
AANPANVYTP FGGGPRLCPG YELARVVLSV FLHRFVTRFS WVPAEEDKLV FFPTTRTQKR YPIIVKRRSA NHV*