GBrowse Details

Vigan.04G408800.01

Basic Information:
Name: Vigan.04G408800.01
Multiple alignment
Variant Information
Position: Chr04:51941068..51945639 (+ strand)
Length: 4572
Functional Information:
Description: Similar to Phosphoinositide phospholipase C. [Q6TM10, Vigna radiata]
GO: Biological Process: lipid metabolic process (GO:0006629)
Biological Process: signal transduction (GO:0007165)
Biological Process: intracellular signal transduction (GO:0035556)
Molecular Function: phosphatidylinositol phospholipase C activity (GO:0004435)
Molecular Function: calcium ion binding (GO:0005509)
Molecular Function: protein binding (GO:0005515)
Molecular Function: phosphoric diester hydrolase activity (GO:0008081)
InterPro: C2 domain (IPR000008)
Phospholipase C, phosphatidylinositol-specific , X domain (IPR000909)
Phosphoinositide phospholipase C family (IPR001192)
Phospholipase C, phosphatidylinositol-specific, Y domain (IPR001711)
EF-hand domain pair (IPR011992)
Phospholipase C, phosphoinositol-specific, EF-hand-like (IPR015359)
PLC-like phosphodiesterase, TIM beta/alpha-barrel domain (IPR017946)
Phosphoinositide phospholipase C, plants (IPR028384)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:119.98,19.64,6.66,4.07,0.30,13.17,2.26,10.96
Arabidopsis thaliana homolog: AT2G40116.1, AT3G08510.1, AT3G55940.1, AT4G38530.1, AT5G58670.1, AT5G58690.1, AT5G58700.1
Automatic updates:
Name: NM_001248395 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max phosphoinositide-specific phospholipase C P25 (LOC547865), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317314 NCBI(nuccore)
Organism: Vigna radiata
Description: Vigna radiata phosphoinositide phospholipase C 2-like (LOC106757831), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:51941068..51941462 (+ strand)
Length: 395
Type: five_prime_UTR
Position: Chr04:51941463..51941777 (+ strand)
Length: 315
Type: CDS
Position: Chr04:51942345..51942541 (+ strand)
Length: 197
Type: CDS
Position: Chr04:51942892..51943027 (+ strand)
Length: 136
Type: CDS
Position: Chr04:51943108..51943353 (+ strand)
Length: 246
Type: CDS
Position: Chr04:51943455..51943684 (+ strand)
Length: 230
Type: CDS
Position: Chr04:51943867..51943984 (+ strand)
Length: 118
Type: CDS
Position: Chr04:51944676..51944828 (+ strand)
Length: 153
Type: CDS
Position: Chr04:51944932..51945018 (+ strand)
Length: 87
Type: CDS
Position: Chr04:51945130..51945423 (+ strand)
Length: 294
Type: CDS
Position: Chr04:51945424..51945639 (+ strand)
Length: 216
Type: three_prime_UTR


>Vigan.04G408800.01
TAACAATAAG ATTTCATTCC ATATTTGGTT TGATATGAAG AGTTGAACGA GTGAGCCAGA AGGAGACGGC AGATTTGAAG
AAAATGACGG AACTGCCAAG TGCCAAACAT CTAAAAGATT GGAGGTTGGA AGTGGGTCCC TCTCATGCAT GCTGACTCTG
GAAACGTATC CACGACAAGA CAACCTTTTC ATTGCCACCT AACACAAGAA ACGTATTCAT TCTCCGACCA AAGTGTTATC
TTCTAGACAC AGCTAACACG CACACGCACT CATATTCGTA TCTACAAACT ACACGCTCCG TTGGCGTTCA CCCCATTAGT
TATATCTTCT TCAAGGAGTT GGGTTGGGGG GAGACACACA CAGAGAGTGA AGAAAAACAA AACATTGATT AAGACATGAC
CAAACAGACT TACAGCTTTT GCTTCTGCTT CCGCCGCCGC TTCAGTCTCC CCGTGTCGGA GGCCCCTCCG GAGATAAGGA
CCCTTTTCGA CCGTTATTCC GATGAGAATG GAATCATGAC AGCCTCTCAC GTCCGCAGTT TCCTGGTTGA GGTGCAGAAG
GAGAAGATTG TCACTGAGGA GGAAGCACAG GCCATCGTCG ATGGCCACAA GCATCTCAGC ATCTTTCACA GGAGGGGTCT
CAATCTTGAG AGTTTCTTCA ACTATCTCTT CAGTAGCAAT AATAATCCAC CTCTCTCGCC TTCTCTTGGG GTGCACCAAG
ATATGTCTTC ACCGTTGTCT CATTACTTCA TTTATACTGG TCATAATTCC TATCTAACTG GGAACCAACT TAGCAGTGAC
TGCAGTGACC TCCCCATCAT CAATGCACTG CAGAAGGGTG TAAGGGTGAT TGAATTAGAT ATATGGCCTA ATGAATCAAA
GGATGATGTG GATGTTCTTC ATGGAAGGAC ATTGACATCT CCTGTGGCAC TCGTCAAATG TTTGAGGTCT ATTAAGCAGT
ATGCTTTTGT TGCCTCAGAA TATCCAGTTG TAATAACCTT AGAAGACCAC CTTACTCCCG ATCTTCAGGC CAAAGTGGCT
GAGATGGTTA CTCAAACATT TGGAGACATA CTATTTTCTC CTGGTTCTGA AAGCTTGAAG GAATTTCCTT CTCCTAAATC
GCTTAAAAGG AGGATTATCA TATCAACCAA ACCACCTAAG GAGTACATTG AGGCAAAAGA AGTTCAGGAA AAGGGGGAGG
GATCACAAAA GGAAAAGCCT GTAGATGATG AAGAAGCATG GGGGAAAGAA GTCCCTAGTT TGAGAGGTGG CACTATTTCT
GATCACAAGA ACATCGAGGA TGAGGATGAT CTTGACAATG AAGATGATAC TGATGAAGCA GAATATTCAC GTCAAAATGC
ATCAGACGAA TACAGACGTT TAATTGCCAT TCATGCTGGG AAGCCTAAAG GTGGATTAAC GGAATGCCTC AAAGTGGATC
CCGATACAGT GAAACGTCTA AGTTTAAGTG AGCTACAACT TGAAAAGGCC GCTGAAACTC ATGGCAAGGA AATCATAAGG
TTTACTCAGC GGAATATACT GAGAGTGTAT CCAAAAGGCA CTCGTATTGC CTCAACAAAT TATAACCCAT TGATCGGGTG
GATGCATGGA GCCCAGATGG TTGCATTCAA CATGCAGGGA TACGGTAGGT CTCTCTGGTT GATGCAGGGA ATGTTCAAAG
CGAATGGGGG ATGTGGTTAT GTTAAGAAAC CAGATTTTCT GTTAAAGACT GGTCTTAATA ATGAGGTCTT TGATCCTAAA
GCTCGTTTGC CAGTGAAGAA AACTTTGAAA GCGACCATAT ACATGGGGGA AGGATGGTAT CATGATTTCA AGCACACGCA
CTTTGATCAA TACTCACCCC CTGACTTCTA TGCAAGAGTG GGGATTGCTG GAGTCCCTCA TGATACTGTT ATGAAAAAAA
CAAAGAGCGT GGAGGATAAT TGGTCTCCAT CATGGAATGA GGTATTTGAG TTTCCACTTT CTGTTCCAGA ACTGGCTCTG
CTTCGTGTAG AAGTTCATGA GTATGACATG TCTGAGAAGG ATGACTTTGG TGGCCAAACG TGCTTACCTG TGTGGGAACT
GAGAAGTGGA ATTCGCGCAG TTCCATTATA TTCCCGTAAA GGAGAAAAGT ACCACAATGT GAAGCTTCTG ATGCGCTTTG
AATTCATTTG ATTTTTGCAT CCTTCTCCTC CGTTTTTGTA CAGTCTTTGA AATCTTATAG TAAGAGTCTT TACGTAGCTG
TGTGGTGTAA ATGGTGCTTA TGTTGAATGA TGATTTTTAT TTATTTTGTC CTTCACTGAA AATATAAGGG TGTGAGTCAG
AATGAGACTT GAATTGCTTG ATTTTGATTC CTCCAACTAG ATTATCTGTG CATCATATGT AAGGGAG

>Vigan.04G408800.01
ATGACCAAAC AGACTTACAG CTTTTGCTTC TGCTTCCGCC GCCGCTTCAG TCTCCCCGTG TCGGAGGCCC CTCCGGAGAT
AAGGACCCTT TTCGACCGTT ATTCCGATGA GAATGGAATC ATGACAGCCT CTCACGTCCG CAGTTTCCTG GTTGAGGTGC
AGAAGGAGAA GATTGTCACT GAGGAGGAAG CACAGGCCAT CGTCGATGGC CACAAGCATC TCAGCATCTT TCACAGGAGG
GGTCTCAATC TTGAGAGTTT CTTCAACTAT CTCTTCAGTA GCAATAATAA TCCACCTCTC TCGCCTTCTC TTGGGGTGCA
CCAAGATATG TCTTCACCGT TGTCTCATTA CTTCATTTAT ACTGGTCATA ATTCCTATCT AACTGGGAAC CAACTTAGCA
GTGACTGCAG TGACCTCCCC ATCATCAATG CACTGCAGAA GGGTGTAAGG GTGATTGAAT TAGATATATG GCCTAATGAA
TCAAAGGATG ATGTGGATGT TCTTCATGGA AGGACATTGA CATCTCCTGT GGCACTCGTC AAATGTTTGA GGTCTATTAA
GCAGTATGCT TTTGTTGCCT CAGAATATCC AGTTGTAATA ACCTTAGAAG ACCACCTTAC TCCCGATCTT CAGGCCAAAG
TGGCTGAGAT GGTTACTCAA ACATTTGGAG ACATACTATT TTCTCCTGGT TCTGAAAGCT TGAAGGAATT TCCTTCTCCT
AAATCGCTTA AAAGGAGGAT TATCATATCA ACCAAACCAC CTAAGGAGTA CATTGAGGCA AAAGAAGTTC AGGAAAAGGG
GGAGGGATCA CAAAAGGAAA AGCCTGTAGA TGATGAAGAA GCATGGGGGA AAGAAGTCCC TAGTTTGAGA GGTGGCACTA
TTTCTGATCA CAAGAACATC GAGGATGAGG ATGATCTTGA CAATGAAGAT GATACTGATG AAGCAGAATA TTCACGTCAA
AATGCATCAG ACGAATACAG ACGTTTAATT GCCATTCATG CTGGGAAGCC TAAAGGTGGA TTAACGGAAT GCCTCAAAGT
GGATCCCGAT ACAGTGAAAC GTCTAAGTTT AAGTGAGCTA CAACTTGAAA AGGCCGCTGA AACTCATGGC AAGGAAATCA
TAAGGTTTAC TCAGCGGAAT ATACTGAGAG TGTATCCAAA AGGCACTCGT ATTGCCTCAA CAAATTATAA CCCATTGATC
GGGTGGATGC ATGGAGCCCA GATGGTTGCA TTCAACATGC AGGGATACGG TAGGTCTCTC TGGTTGATGC AGGGAATGTT
CAAAGCGAAT GGGGGATGTG GTTATGTTAA GAAACCAGAT TTTCTGTTAA AGACTGGTCT TAATAATGAG GTCTTTGATC
CTAAAGCTCG TTTGCCAGTG AAGAAAACTT TGAAAGCGAC CATATACATG GGGGAAGGAT GGTATCATGA TTTCAAGCAC
ACGCACTTTG ATCAATACTC ACCCCCTGAC TTCTATGCAA GAGTGGGGAT TGCTGGAGTC CCTCATGATA CTGTTATGAA
AAAAACAAAG AGCGTGGAGG ATAATTGGTC TCCATCATGG AATGAGGTAT TTGAGTTTCC ACTTTCTGTT CCAGAACTGG
CTCTGCTTCG TGTAGAAGTT CATGAGTATG ACATGTCTGA GAAGGATGAC TTTGGTGGCC AAACGTGCTT ACCTGTGTGG
GAACTGAGAA GTGGAATTCG CGCAGTTCCA TTATATTCCC GTAAAGGAGA AAAGTACCAC AATGTGAAGC TTCTGATGCG
CTTTGAATTC ATTTGA

>Vigan.04G408800.01
MTKQTYSFCF CFRRRFSLPV SEAPPEIRTL FDRYSDENGI MTASHVRSFL VEVQKEKIVT EEEAQAIVDG HKHLSIFHRR
GLNLESFFNY LFSSNNNPPL SPSLGVHQDM SSPLSHYFIY TGHNSYLTGN QLSSDCSDLP IINALQKGVR VIELDIWPNE
SKDDVDVLHG RTLTSPVALV KCLRSIKQYA FVASEYPVVI TLEDHLTPDL QAKVAEMVTQ TFGDILFSPG SESLKEFPSP
KSLKRRIIIS TKPPKEYIEA KEVQEKGEGS QKEKPVDDEE AWGKEVPSLR GGTISDHKNI EDEDDLDNED DTDEAEYSRQ
NASDEYRRLI AIHAGKPKGG LTECLKVDPD TVKRLSLSEL QLEKAAETHG KEIIRFTQRN ILRVYPKGTR IASTNYNPLI
GWMHGAQMVA FNMQGYGRSL WLMQGMFKAN GGCGYVKKPD FLLKTGLNNE VFDPKARLPV KKTLKATIYM GEGWYHDFKH
THFDQYSPPD FYARVGIAGV PHDTVMKKTK SVEDNWSPSW NEVFEFPLSV PELALLRVEV HEYDMSEKDD FGGQTCLPVW
ELRSGIRAVP LYSRKGEKYH NVKLLMRFEF I*