VIGGS:GBrowse

Vigan.04G409800.01

Basic Information:

Name:	Vigan.04G409800.01 Multiple alignment Variant Information
Position:	Chr04:52013082..52016361 (- strand)
Length:	3280

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MZ17, Glycine max]
GO:	Biological Process: oxidation-reduction process (GO:0055114)
	Molecular Function: iron ion binding (GO:0005506)
	Molecular Function: oxidoreductase activity (GO:0016491)
	Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (GO:0016706)
InterPro:	Isopenicillin N synthase (IPR002283)
	Oxoglutarate/iron-dependent dioxygenase (IPR005123)
	Non-haem dioxygenase N-terminal domain (IPR026992)
	Isopenicillin N synthase-like (IPR027443)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:0.06,0.00,23.24,3.31,1.66,1.54,6.17,4.28
Arabidopsis thaliana homolog:	AT5G05600.1

Automatic updates:

Name:	NM_001289310 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max flavonol synthase/flavanone 3-hydroxylase-like (LOC100801693), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:52013082..52013386 (- strand)
Length:	305
Type:	three_prime_UTR

Position:	Chr04:52013387..52013635 (- strand)
Length:	249
Type:	CDS

Position:	Chr04:52014868..52015198 (- strand)
Length:	331
Type:	CDS

Position:	Chr04:52015527..52016029 (- strand)
Length:	503
Type:	CDS

Position:	Chr04:52016030..52016361 (- strand)
Length:	332
Type:	five_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G409800.01
ATTAACTTGC ACAGCATTTC ACACACAGAA ACACCCTTTA AAAACCCACA AACTTCACGT TTTATATTAC GTCCATTTCG
CTTTTCATGC CTCCACGGTC CCACTCTCTT CTCTTCCTTT AACTTCCACC ATATCTCATC CCGACACTCT TCTTCCTCTT
CTTTCTTTCT TTCTTTGCCT CAAATTCAAA TCCATTATCT TTCTCTTCCA AGTCTCTCAA CTTTCAAATT AAAAAAATAA
CCACTTCCTT TCATACTTCA CTGTATATTT CTTCTTATAA ACACCAACCG ACCAATTACC CTGTCTAGTA TTGTACTACT
ATCTAGCTAG CAATGTCAAA AGACCAACCA GATTGGCCAG AACCTATTGT TCGGGTTCAG TCTTTATCCG AAAGCTGCTT
CGATTCAATC CCCGAAAGGT ACATCAAGCC CTCTACCGAT AGACCATCAT CCGGAAGCTC TGATTTTGAT GATGCCAACA
ACATCCCCAT CATCGACCTC GGAGGTCTCG GTGGCGTCGA CCATCATGTC TCATCCTCAA TTCTTAAGCA AATCTCAGAC
GCTTGCAAGG AGTGGGGCTT CTTCCAAATC ACAAACCATG GCGTCGATCC CGATTTGATG GACAAGGTTA GGGAAACTTG
GCGTCAATTC TTTCACTTGC CCATGGAGGT CAAGCAACAA TACGCAAACT CACCCAAAAC TTACGAAGGC TATGGAAGCA
GACTTGGAAT CGAGAAAGGT GCTATTCTTG ATTGGAGTGA TTACTATTAT CTTCACTATC TTCCCTTGGC TCTCAAGGAC
TGTAACAAAT GGCCGAACTT GCCTCCCCAA TGCAGGGAAG TGTTTGATGA GTATGGGAGA GAGTTAGTGA AGCTGTGTGG
GAGGTTGATG AAGGTTTTGT CGATAAACCT TGGATTAGAC GAAAAGACTC TTCAAAATGC TTTTGGGGGG GAAGACATAG
GGGCATGTCT GAGAGTGAAT TTTTACCCTA AGTGTCCACG ACCAGAGTTA ACACTGGGTC TCTCATCACA CTCAGACCCT
GGAGGAATGA CCATGTTGCT TCCAGATGAT CAAGTTCCTG GTCTTCAAGT TCGAAAATTC AACAATTGGA TTACTGTGAA
GCCTGCACGC CATGCTTTCA TCGTTAATAT TGGCGATCAA ATTCAGGTAC TGAGCAATGC AATTTACAAG AGTGTGGAAC
ACAGAGTGAT AGTAAACTCA GATAAGGAGA GAGTTTCTCT GGCTTTTTTC TACAACCCGA AAAGTGATAT ACGCATAGAA
CCAATAAAGG AGCTGGTAAC AGTGAATACA CCTTCACTTT ATCCACCAAT GACCTTCGAT GAATATAGAC TCTTCATTAG
AATGAGAGGA CCTCGAGGAA AATCTCAAGT TGAATCTCTA AAGTCTCCAA AATGATTCAT TCTTCACATT CCAACTCTAT
ATTTCCAAAT TTCCAAATGT AATATACAAT AATAATAATA ATTAATAATA ATAATTAGTT TGGACCATGC TTGGTTATAA
CTATTTAAGA AATAATTTAT TACTTCTCAA CTACTCCCAA ACGTGCTACA AAATCTAGTA AAGAGATAGG TATTTGTTTG
CACATTGAGG CCTTGAGCAA AGATATGATG AAATGGAGAT TGGACATTTT GGTATGAAAT TATTTGGACA AGTTGTTTTC
TTCTTTGGTT TACGATGATG TCGAAAATTT GATTGTGTCT

[show][hide][copy]CDS

>Vigan.04G409800.01
ATGTCAAAAG ACCAACCAGA TTGGCCAGAA CCTATTGTTC GGGTTCAGTC TTTATCCGAA AGCTGCTTCG ATTCAATCCC
CGAAAGGTAC ATCAAGCCCT CTACCGATAG ACCATCATCC GGAAGCTCTG ATTTTGATGA TGCCAACAAC ATCCCCATCA
TCGACCTCGG AGGTCTCGGT GGCGTCGACC ATCATGTCTC ATCCTCAATT CTTAAGCAAA TCTCAGACGC TTGCAAGGAG
TGGGGCTTCT TCCAAATCAC AAACCATGGC GTCGATCCCG ATTTGATGGA CAAGGTTAGG GAAACTTGGC GTCAATTCTT
TCACTTGCCC ATGGAGGTCA AGCAACAATA CGCAAACTCA CCCAAAACTT ACGAAGGCTA TGGAAGCAGA CTTGGAATCG
AGAAAGGTGC TATTCTTGAT TGGAGTGATT ACTATTATCT TCACTATCTT CCCTTGGCTC TCAAGGACTG TAACAAATGG
CCGAACTTGC CTCCCCAATG CAGGGAAGTG TTTGATGAGT ATGGGAGAGA GTTAGTGAAG CTGTGTGGGA GGTTGATGAA
GGTTTTGTCG ATAAACCTTG GATTAGACGA AAAGACTCTT CAAAATGCTT TTGGGGGGGA AGACATAGGG GCATGTCTGA
GAGTGAATTT TTACCCTAAG TGTCCACGAC CAGAGTTAAC ACTGGGTCTC TCATCACACT CAGACCCTGG AGGAATGACC
ATGTTGCTTC CAGATGATCA AGTTCCTGGT CTTCAAGTTC GAAAATTCAA CAATTGGATT ACTGTGAAGC CTGCACGCCA
TGCTTTCATC GTTAATATTG GCGATCAAAT TCAGGTACTG AGCAATGCAA TTTACAAGAG TGTGGAACAC AGAGTGATAG
TAAACTCAGA TAAGGAGAGA GTTTCTCTGG CTTTTTTCTA CAACCCGAAA AGTGATATAC GCATAGAACC AATAAAGGAG
CTGGTAACAG TGAATACACC TTCACTTTAT CCACCAATGA CCTTCGATGA ATATAGACTC TTCATTAGAA TGAGAGGACC
TCGAGGAAAA TCTCAAGTTG AATCTCTAAA GTCTCCAAAA TGA

[show][hide][copy]PROTEIN

>Vigan.04G409800.01
MSKDQPDWPE PIVRVQSLSE SCFDSIPERY IKPSTDRPSS GSSDFDDANN IPIIDLGGLG GVDHHVSSSI LKQISDACKE
WGFFQITNHG VDPDLMDKVR ETWRQFFHLP MEVKQQYANS PKTYEGYGSR LGIEKGAILD WSDYYYLHYL PLALKDCNKW
PNLPPQCREV FDEYGRELVK LCGRLMKVLS INLGLDEKTL QNAFGGEDIG ACLRVNFYPK CPRPELTLGL SSHSDPGGMT
MLLPDDQVPG LQVRKFNNWI TVKPARHAFI VNIGDQIQVL SNAIYKSVEH RVIVNSDKER VSLAFFYNPK SDIRIEPIKE
LVTVNTPSLY PPMTFDEYRL FIRMRGPRGK SQVESLKSPK *