GBrowse Details

Vigan.04G412300.01

Basic Information:
Name: Vigan.04G412300.01
Multiple alignment
Variant Information
Position: Chr04:52206460..52213929 (+ strand)
Length: 7470
Functional Information:
Description: Similar to Leucine-rich repeat and IQ domain-containing protein 3, putative isoform 1. [XP_007008865.1, Theobroma cacao]
InterPro: Autophagy-related protein 27 (IPR018939)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:22.50,13.70,7.25,8.08,6.84,3.71,5.75,5.74
Arabidopsis thaliana homolog: AT2G40316.1
Structure :
Position: Chr04:52206460..52206618 (+ strand)
Length: 159
Type: five_prime_UTR
Position: Chr04:52206619..52206821 (+ strand)
Length: 203
Type: CDS
Position: Chr04:52207292..52207334 (+ strand)
Length: 43
Type: CDS
Position: Chr04:52207949..52208002 (+ strand)
Length: 54
Type: CDS
Position: Chr04:52208489..52208552 (+ strand)
Length: 64
Type: CDS
Position: Chr04:52210177..52210233 (+ strand)
Length: 57
Type: CDS
Position: Chr04:52210426..52210532 (+ strand)
Length: 107
Type: CDS
Position: Chr04:52210650..52210688 (+ strand)
Length: 39
Type: CDS
Position: Chr04:52211733..52211821 (+ strand)
Length: 89
Type: CDS
Position: Chr04:52211919..52211997 (+ strand)
Length: 79
Type: CDS
Position: Chr04:52212994..52213041 (+ strand)
Length: 48
Type: CDS
Position: Chr04:52213193..52213273 (+ strand)
Length: 81
Type: CDS
Position: Chr04:52213274..52213929 (+ strand)
Length: 656
Type: three_prime_UTR


>Vigan.04G412300.01
TGTAAAATTG GGGAGAAGGG TGGGGTGGGT TAAAGATGGT CCCAATAGCC AATAGTTCTT TCTTTCGCCC CCACATTCCA
CGCTTCTCCA AACCAATCTT CACTCTCTTC TGCTCAACCA ACTCAATACG ATGCAGCGAG CAGCATGAAA TGAAATAAAA
TGTCTCTTCA ACCTTCAACC TTCGCAATGT CAATGCTGCA TCAACGCGTC ATCATCATCA TCTTCATGCT TCTTCTACCC
CTCACCTCCG CCACCGCCTC CGTACCTTGC CGATTCTCTT TTCCCGACGG AGACCATCTC TACAATTACA CCCTCTCTTC
TCCCATCCGC AACTTCCCTC ACGGCATCCT CAGCGAAAAC GGATTTTACA AAGTGGCAGT AAACGAGACC ACACTTTGGT
TTCAGCTTTG CGATGGAATG ATTTTCAATC ACGATCCTCC AGTATGTGCT GATTGCTGGG ATTGTGGAGG CCCAAATCAT
TGTGGGACTC AGTGCAATGC ACTGGTGGCA AACAAAGTTG GAGGTTATCA TGTATGCACA GCCATAGGAC GTGGCCCAAA
AATAGATTTT GATATAATTG ATAAGAAAAA TCCCCATACT GGTGTCATTG TTAAAATGTC AAACAGTGGC CCCAAGTTCA
ACTGTTCGCT AGCTGTATCT GTTATTTGCA ATTCAAATGG AGTGCAGGGA CCACAGGCTC TGGAGAGATT AGGTGCCTGT
GATTATGTTA CAGAGCTGAA GCACCCATCT GGTTGTGCCG TCATTATAAA TGTTCATGGA GGAGGGTTGG GGTGGTTTGG
CACCTTAATG ATCATTGTTT TGTGCCTTTT TGCTGCATAT CTCCTGGCTG GTATAGTTTA CCGAATTTTC TTCCTCGGGA
TCCGTGGTGT AGATATTATC CCTAACTTGG ACTTCTGGGT CAGCTTGCCT AGGAAAATAC AGAGTCTGTG TTCTTCTTTG
GTGAGGAGGT TTAAGGGACC GTCTGAAAGT TACCGGAGCT CCTATTCACC TGTGAACTTC TGAGATTATA TTTTTGATTC
TGGATATATT TGGTGAATTT CTTACGGAAA ATCTTACAAA CACGAGGCAA ACATTCTGCA GACAAATGCA GAAAATTCCA
TTTTCAGATA CCCTATTGGT CAGTTCTGAG CTTCCTTGAT ATGGAACATT CCTCAGAAAT CTGTAATTAT TTTTCTGATT
GTCCCTCCAT GAATTTATCA TTATCGTCTT TGAAAGACAA GGAGAAAGAG CAGGAGGAAG AAGAAGAAAA CAAAGATAAC
ACGAAAAAGA AAGTCGGGAT AATTCTTTAA GAAAGGAGGT ATTGATTATA ATGGAGCTAA TCTAATAATT TTGGTAGACA
TTCTTTGGCT GATAATCAGA TAATTGAATG AAATTGTAAC TTTTATTTTG TTAGTTTGAC CATTAATTAT TTTTTGTTTC
TCATATTGTA ACCATTCTTG CATTTCTACT TGATTTAATA TGGATTGGGC GTGCCATAAT GCTGTTAGCT TTCTGCCTAA
GATGGCCTAA TATATCCAAA GTAAATGTAA GTTCAATGGT CAGCATTAAT CTCTTGTCTT CAGTCATCCC ATGTTATTTA
TCCGCTGCTG GCTTTTGTAA TACTCGAGTT TTTGTACATA CCACCACGTT ATGTTTACCT ATTGACAAGA ACTAATAAC

>Vigan.04G412300.01
ATGTCTCTTC AACCTTCAAC CTTCGCAATG TCAATGCTGC ATCAACGCGT CATCATCATC ATCTTCATGC TTCTTCTACC
CCTCACCTCC GCCACCGCCT CCGTACCTTG CCGATTCTCT TTTCCCGACG GAGACCATCT CTACAATTAC ACCCTCTCTT
CTCCCATCCG CAACTTCCCT CACGGCATCC TCAGCGAAAA CGGATTTTAC AAAGTGGCAG TAAACGAGAC CACACTTTGG
TTTCAGCTTT GCGATGGAAT GATTTTCAAT CACGATCCTC CAGTATGTGC TGATTGCTGG GATTGTGGAG GCCCAAATCA
TTGTGGGACT CAGTGCAATG CACTGGTGGC AAACAAAGTT GGAGGTTATC ATGTATGCAC AGCCATAGGA CGTGGCCCAA
AAATAGATTT TGATATAATT GATAAGAAAA ATCCCCATAC TGGTGTCATT GTTAAAATGT CAAACAGTGG CCCCAAGTTC
AACTGTTCGC TAGCTGTATC TGTTATTTGC AATTCAAATG GAGTGCAGGG ACCACAGGCT CTGGAGAGAT TAGGTGCCTG
TGATTATGTT ACAGAGCTGA AGCACCCATC TGGTTGTGCC GTCATTATAA ATGTTCATGG AGGAGGGTTG GGGTGGTTTG
GCACCTTAAT GATCATTGTT TTGTGCCTTT TTGCTGCATA TCTCCTGGCT GGTATAGTTT ACCGAATTTT CTTCCTCGGG
ATCCGTGGTG TAGATATTAT CCCTAACTTG GACTTCTGGG TCAGCTTGCC TAGGAAAATA CAGAGTCTGT GTTCTTCTTT
GGTGAGGAGG TTTAAGGGAC CGTCTGAAAG TTACCGGAGC TCCTATTCAC CTGTGAACTT CTGA

>Vigan.04G412300.01
MSLQPSTFAM SMLHQRVIII IFMLLLPLTS ATASVPCRFS FPDGDHLYNY TLSSPIRNFP HGILSENGFY KVAVNETTLW
FQLCDGMIFN HDPPVCADCW DCGGPNHCGT QCNALVANKV GGYHVCTAIG RGPKIDFDII DKKNPHTGVI VKMSNSGPKF
NCSLAVSVIC NSNGVQGPQA LERLGACDYV TELKHPSGCA VIINVHGGGL GWFGTLMIIV LCLFAAYLLA GIVYRIFFLG
IRGVDIIPNL DFWVSLPRKI QSLCSSLVRR FKGPSESYRS SYSPVNF*