GBrowse Details

Vigan.04G412700.01

Basic Information:
Name: Vigan.04G412700.01
Multiple alignment
Variant Information
Position: Chr04:52246055..52249429 (- strand)
Length: 3375
Functional Information:
Description: Similar to Laccase. [I1MYY9, Glycine max]
GO: Biological Process: lignin catabolic process (GO:0046274)
Biological Process: oxidation-reduction process (GO:0055114)
Cellular Component: apoplast (GO:0048046)
Molecular Function: copper ion binding (GO:0005507)
Molecular Function: oxidoreductase activity (GO:0016491)
Molecular Function: hydroquinone:oxygen oxidoreductase activity (GO:0052716)
InterPro: Multicopper oxidase, type 1 (IPR001117)
Multicopper oxidase, copper-binding site (IPR002355)
Cupredoxin (IPR008972)
Multicopper oxidase, type 2 (IPR011706)
Multicopper oxidase, type 3 (IPR011707)
Laccase (IPR017761)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.02,0.00,5.48,7.05,0.98,15.07,0.50,12.06
Arabidopsis thaliana homolog: AT2G29130.1, AT2G30210.1, AT2G38080.1, AT2G40370.1, AT3G09220.1, AT5G01190.1, AT5G03260.1, AT5G05390.1, AT5G07130.1, AT5G09360.1, AT5G48100.1, AT5G60020.1
Automatic updates:
Name: NM_001249687 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max diphenol oxidase laccase (LOC547704), mRNA.
PubMed ID: 19193960 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:52246055..52246362 (- strand)
Length: 308
Type: three_prime_UTR
Position: Chr04:52246363..52246493 (- strand)
Length: 131
Type: CDS
Position: Chr04:52246626..52247067 (- strand)
Length: 442
Type: CDS
Position: Chr04:52247361..52247902 (- strand)
Length: 542
Type: CDS
Position: Chr04:52248310..52248438 (- strand)
Length: 129
Type: CDS
Position: Chr04:52248584..52248828 (- strand)
Length: 245
Type: CDS
Position: Chr04:52248971..52249122 (- strand)
Length: 152
Type: CDS
Position: Chr04:52249208..52249309 (- strand)
Length: 102
Type: CDS
Position: Chr04:52249310..52249429 (- strand)
Length: 120
Type: five_prime_UTR


>Vigan.04G412700.01
ATTCAACTTT ATCTCTTTCT CACCCCTCTA ATCCTCCCTA TAAAACCACC CTCTCCCACT CTTATACTTG CATTGCAACC
TTAACTTCCA CCATTCATAT TCACACCAAG CTGTTCAAAG ATGGAAGCTG CCAAGACCTC CATCTTCCTA GCCATCATTT
TCCTTCTCTT AACTTCAGCA TTGTCTTTAG CAAATGCAAA AGTTCACGCG CATGAGTTTG TTGTCGAAGC AACTCCAGTG
AAGAGGCTGT GCAAAACACA CAATGCCATC ACTGTGAACG GCCAATTCCC CGGCCCAACG TTGGAAATCA ACAATGGAGA
CACTTTAGTC GTCAAAGTCA CCAACAAAGC TCGTTACAAT GTCACCATTC ATTGGCACGG TGTTAGGCAA ATGAGAACAG
GATGGGCAGA TGGACCAGAA TTTGTGACTC AGTGCCCCAT TCGTCCTGGA GGAAGTTACA CCTACCGTTT TACCGTTCAA
GGACAAGAAG GCACACTTTG GTGGCATGCT CATAGCTCCT GGCTTAGAGC CACCGTTTAT GGTGCTTTAA TCATTCGTCC
CAGGGAAGGA GAACTCTACC CTTTCCCTAA GCCAAACCAC GACACACCCA TTCTTCTTGG GGAATGGTGG GACGCAAACC
CTATTGATGT AGTGAGGCAG GCCACACGAA CTGGAGGAGC TCCTAACGTG TCTGATGCAT ACACCATTAA TGGTCAACCT
GGTGATCTTT ACAAGTGCTC CTCCAAAGAT ACTACCATTG TTCCGATTCA TGCTGGAGAA ACAAACCTTC TACGTGTCAT
CAATGCTGCA CTCAATCAAC CTCTCTTTTT TACCGTCGCA AACCATAAAC TTACGGTGGT TGGCGCCGAC GCCTCCTACC
TCAAACCCTT CACCACCAAA GTCCTCATGT TGGGACCCGG CCAAACCACT GATGTCCTCC TTACCGCCGA CCAGCCACCA
TCTCGGTACT ACATGGCAGC GCGTGCATAC CAATCTGCTC AAAACGCTCC GTTTGACAAC ACCACCACCA CCGCAATATT
GGAATACAGA TCACCTCACC ATGGTAACCA TTCTCGGCAT CATCATTCTA AAGGTGTTAA GAACAAAAGG AGACCTATAA
TGCCTCCACT CCCTGCTTAC AACGACACAA ACACCGTCAC TGCTTTCAGC AGAAGCTTCA GAAGCCCCAG AAAAGTTGAG
GTCCCCACGG AAATCGATCA AAGCCTTTTC TTCGCTGTGG GGTTAGGACT CAACAAATGC CCCAAAAACT TCAAACCAAA
TAGGTGTCAG GGACCCAATG GTACGAGGTT CACTGCGAGC ATGAACAACG TGTCTTTCGT GCTCCCCAAC AACGTTTCCA
TCTTGCAGGC TCAATACCTC GGAATCCCGG GAGTGTTCAC GACCGATTTT CCGGGGAAGC CGCCGGTGAA GTTCGATTAC
ACCGGCAACG TGAGCCGTTC ATTGTGGCAA CCTATTCCCG GGACTAAGGC TCACAAGTTG AAGTTCGGAT CGAGGGTTGA
GATTGTTTTG CAGGATACTA GCATTGTTAC TCCTGAGAAC CACCCTATCC ATCTCCATGG CTATGATTTC TACATTGTTG
CAGAGGGGTT CGGGAACTTC GACCCGAAGA AAGACAGGGC GAAATTCAAC CTTGTCGATC CTCCTTTGAG GAACACAGTG
GCTGTCCCTG TAAATGGATG GGCAGTTATT CGATTTGTTG CTGATAATCC AGGTGCATGG CTTATGCATT GCCACTTGGA
CGTCCACATA GGGTGGGGTT TGGCGACGGT GTTGGTGGTG GAGAACGGCG TTGGGAAATT GCAATTCATA GAGCCTCCTC
CAGTGGATCT GCCTCTTTGT TAGGGCCATT TCACCATGAT CACTAAAGAA CCGAGTGATA CCAGTTTTTG TTAGTTTCAA
AGTTTGGTCA ATGTTTCCCT GCATTATGGG AGGTTTTTTT TGTTTTGATT CCATTGCTTT GCTTTGCTTT AATTTGTACC
TTCTTTTTAT ATAGAGATAA ATTGGGTTTG AAACTTAGGG AGAGATGGTG ATGCGTTTCA ACACAAATAT ACCATCTGAG
TAGTCATAAG CCCCACTGGT TAAAGTGATG TTCATTTTAC AAGCAGATTG CTAGTTTTGA AGATAATATA AGCCCTGAAT
TTTGTTTGTT A

>Vigan.04G412700.01
ATGGAAGCTG CCAAGACCTC CATCTTCCTA GCCATCATTT TCCTTCTCTT AACTTCAGCA TTGTCTTTAG CAAATGCAAA
AGTTCACGCG CATGAGTTTG TTGTCGAAGC AACTCCAGTG AAGAGGCTGT GCAAAACACA CAATGCCATC ACTGTGAACG
GCCAATTCCC CGGCCCAACG TTGGAAATCA ACAATGGAGA CACTTTAGTC GTCAAAGTCA CCAACAAAGC TCGTTACAAT
GTCACCATTC ATTGGCACGG TGTTAGGCAA ATGAGAACAG GATGGGCAGA TGGACCAGAA TTTGTGACTC AGTGCCCCAT
TCGTCCTGGA GGAAGTTACA CCTACCGTTT TACCGTTCAA GGACAAGAAG GCACACTTTG GTGGCATGCT CATAGCTCCT
GGCTTAGAGC CACCGTTTAT GGTGCTTTAA TCATTCGTCC CAGGGAAGGA GAACTCTACC CTTTCCCTAA GCCAAACCAC
GACACACCCA TTCTTCTTGG GGAATGGTGG GACGCAAACC CTATTGATGT AGTGAGGCAG GCCACACGAA CTGGAGGAGC
TCCTAACGTG TCTGATGCAT ACACCATTAA TGGTCAACCT GGTGATCTTT ACAAGTGCTC CTCCAAAGAT ACTACCATTG
TTCCGATTCA TGCTGGAGAA ACAAACCTTC TACGTGTCAT CAATGCTGCA CTCAATCAAC CTCTCTTTTT TACCGTCGCA
AACCATAAAC TTACGGTGGT TGGCGCCGAC GCCTCCTACC TCAAACCCTT CACCACCAAA GTCCTCATGT TGGGACCCGG
CCAAACCACT GATGTCCTCC TTACCGCCGA CCAGCCACCA TCTCGGTACT ACATGGCAGC GCGTGCATAC CAATCTGCTC
AAAACGCTCC GTTTGACAAC ACCACCACCA CCGCAATATT GGAATACAGA TCACCTCACC ATGGTAACCA TTCTCGGCAT
CATCATTCTA AAGGTGTTAA GAACAAAAGG AGACCTATAA TGCCTCCACT CCCTGCTTAC AACGACACAA ACACCGTCAC
TGCTTTCAGC AGAAGCTTCA GAAGCCCCAG AAAAGTTGAG GTCCCCACGG AAATCGATCA AAGCCTTTTC TTCGCTGTGG
GGTTAGGACT CAACAAATGC CCCAAAAACT TCAAACCAAA TAGGTGTCAG GGACCCAATG GTACGAGGTT CACTGCGAGC
ATGAACAACG TGTCTTTCGT GCTCCCCAAC AACGTTTCCA TCTTGCAGGC TCAATACCTC GGAATCCCGG GAGTGTTCAC
GACCGATTTT CCGGGGAAGC CGCCGGTGAA GTTCGATTAC ACCGGCAACG TGAGCCGTTC ATTGTGGCAA CCTATTCCCG
GGACTAAGGC TCACAAGTTG AAGTTCGGAT CGAGGGTTGA GATTGTTTTG CAGGATACTA GCATTGTTAC TCCTGAGAAC
CACCCTATCC ATCTCCATGG CTATGATTTC TACATTGTTG CAGAGGGGTT CGGGAACTTC GACCCGAAGA AAGACAGGGC
GAAATTCAAC CTTGTCGATC CTCCTTTGAG GAACACAGTG GCTGTCCCTG TAAATGGATG GGCAGTTATT CGATTTGTTG
CTGATAATCC AGGTGCATGG CTTATGCATT GCCACTTGGA CGTCCACATA GGGTGGGGTT TGGCGACGGT GTTGGTGGTG
GAGAACGGCG TTGGGAAATT GCAATTCATA GAGCCTCCTC CAGTGGATCT GCCTCTTTGT TAG

>Vigan.04G412700.01
MEAAKTSIFL AIIFLLLTSA LSLANAKVHA HEFVVEATPV KRLCKTHNAI TVNGQFPGPT LEINNGDTLV VKVTNKARYN
VTIHWHGVRQ MRTGWADGPE FVTQCPIRPG GSYTYRFTVQ GQEGTLWWHA HSSWLRATVY GALIIRPREG ELYPFPKPNH
DTPILLGEWW DANPIDVVRQ ATRTGGAPNV SDAYTINGQP GDLYKCSSKD TTIVPIHAGE TNLLRVINAA LNQPLFFTVA
NHKLTVVGAD ASYLKPFTTK VLMLGPGQTT DVLLTADQPP SRYYMAARAY QSAQNAPFDN TTTTAILEYR SPHHGNHSRH
HHSKGVKNKR RPIMPPLPAY NDTNTVTAFS RSFRSPRKVE VPTEIDQSLF FAVGLGLNKC PKNFKPNRCQ GPNGTRFTAS
MNNVSFVLPN NVSILQAQYL GIPGVFTTDF PGKPPVKFDY TGNVSRSLWQ PIPGTKAHKL KFGSRVEIVL QDTSIVTPEN
HPIHLHGYDF YIVAEGFGNF DPKKDRAKFN LVDPPLRNTV AVPVNGWAVI RFVADNPGAW LMHCHLDVHI GWGLATVLVV
ENGVGKLQFI EPPPVDLPLC *