GBrowse Details

Vigan.04G413300.01

Basic Information:
Name: Vigan.04G413300.01
Multiple alignment
Variant Information
Position: Chr04:52291798..52295017 (- strand)
Length: 3220
Functional Information:
Description: Similar to Uncharacterized protein. [I1MYY4, Glycine max]
GO: Biological Process: tyrosine biosynthetic process (GO:0006571)
Biological Process: oxidation-reduction process (GO:0055114)
Molecular Function: prephenate dehydrogenase (NADP+) activity (GO:0004665)
Molecular Function: prephenate dehydrogenase activity (GO:0008977)
InterPro: Prephenate dehydrogenase (IPR003099)
NAD(P)-binding domain (IPR016040)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.67,1.41,19.99,10.64,9.72,16.09,5.27,15.28
Automatic updates:
Name: KM507071 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max cultivar Williams 82 prephenate dehydrogenase 1 (PDH1) mRNA, complete cds.
PubMed ID: -
Status: Known Variant
Name: NM_001317596 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max arogenate dehydrogenase 1, chloroplastic-like (LOC100787362), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:52291798..52293002 (- strand)
Length: 1205
Type: three_prime_UTR
Position: Chr04:52293003..52293089 (- strand)
Length: 87
Type: CDS
Position: Chr04:52293203..52293277 (- strand)
Length: 75
Type: CDS
Position: Chr04:52293392..52293461 (- strand)
Length: 70
Type: CDS
Position: Chr04:52293551..52293633 (- strand)
Length: 83
Type: CDS
Position: Chr04:52294062..52294386 (- strand)
Length: 325
Type: CDS
Position: Chr04:52294690..52294853 (- strand)
Length: 164
Type: CDS
Position: Chr04:52294854..52295017 (- strand)
Length: 164
Type: five_prime_UTR


>Vigan.04G413300.01
AGCGTTACGC TTGAAATTGG CGTAAACGTG TATGACAAGT GACAGAGGAG CATTAAATAC GCTGTTACCC TTGCCCTAAT
TGAGCAGAGG AAATCCTGTG ATAGTGTTGT TTTCCTAAAG TTATCTCATT CACCTTTGTT TCTCATCTAA TTCTCAACTC
AACCATGTCA TCATCGTCTT CCCAAAGCCT CAGAATTGGC ATAGTTGGAT TCGGCACCTT TGGCCAATTT CTGGCCAAGA
CAATGATAAA ACAAGGCCAC TCTCTCTCTG CAACTTCTCG ATCCGATTAC TCCGACCTCT GTCTCCAAAT GGGCATTCAC
TTTTACAGGG ATGTCAGCGC GTTCCTTGCT GCTGACATAG ATGTCATAGT GCTGTGCACA TCGATATTAT CGCTATCCGA
GGTTGTGGGG TCAATGCCAC TCGCTTCCCT GAAGCGCCCA TCACTCTTTG TTGATGTTCT TTCAGTCAAA GAGCACCCAA
GAGAACTTCT GCTACGAGAG TTGCCAGTGC ACTCCGACAT TCTCTGCACT CACCCTATGT TTGGACCTGT CACTGGCAAG
AATGGATGGA AAGGTCTCAC TTTCATGTAT GACAAAGTTC GGATAAGAAA TGAAGCTATC TGCTCTGGTT TCATCCAAAT
TTTTGCCGGT GAGGGTTGCA AGATGGTAGA AATGACTTGT GAGGAACATG ACAAAGCAGC TGCGAAGAGC CAATTTATCA
CCCACACAAT TGGCAGAACA TTGGCAGAAA TGGATATTAA ATCAACACCT ATCGACACCA AGGGCTTTCA GGAACTTGTT
AAATTGAAGG AGACCATGAT AGGAAATAGT TTTGATTTGT TCAGTGGATT ATTCGTGTAT AACAGATTCG CCAGCCAGGA
GCTGGAAAAC CTTGAACATG CCTTGCAAAA AGTCAAAGAA ACGCTGGTTG AAAGGATGAA CGAGGAGAAG GGTCAAGAAA
AGAACTGATG TTATGCATAA TTTTATATGA GATATATTCT CGAACAATCA AATTTCCTCT TGTTCCAGTC ATAAATTATT
CCCATTTCAG TTTTACAGTT ACCAAAATGA AGTCAACTAA TAAACCAAAT ACACTTGCAT ATGTTCAATC TTGCTATAAA
AATATGGGAC GATCTTGTTC CCAGTATACA CTGTGATTTC ATGAAGCTAA AACACAGATA TTTAGTCCTC AATGTCACCA
TTTAACTCAA GTGTGTTTCA TTTAATCAAC TTCAACTCCC TTAATTTTAA GCCAGATCTT CACTACCACT TCCTTTCCCA
ATAAACAAAT TAGAACATTC TCTGGGGTCT TGACATGAGC TTTTTGGCTT TCTAATCAAC CTATCCGCAG AGTATGTATT
CCTTGACGTA CAGAAATAAT CTAAGCCAAA GGTTACTGCA AAGATATCGA AAGTTCACTG ACCCTTGATA AATTGATAGT
CTAAAGGTGT ACAAACGTCA AACTCCATGA GAGTTCAAAA CAAGTGCTCC TGAATTTTTA TCCCATATCA ACAAGACTTA
ACAAGACATA TAAATACCTT TAGCAAAGAG TAGGTAACAA CTTGTGTTGG TTTCGATTTG AGTCCCTTCT ATCTATTCCA
CTTGTTACAT TTATGAAGAA AAATTTTATA TTCACCAAAC TGTGAAATGG GAAACATCAA AACGTATACA AGTGAGCTGT
CGAAGGAATT GTAAGAAGCT AATCAGCAAG AGACAGAAAG AGATTATGAT GAAAACAATA ACCTATTCCT CTGTGCCTGT
ATTACCAGCT TTTCAAGAAT AATACAAATT ACCACGAAAA AAATGTCGCA ACGTATCGTC ACCACTTTTA TTTTTCTATC
TCATCAATGG TGGCTTCTTC TGCTTCGTTG CATAAAATTG CAGCACTATT CGGAGAATCT GATGTTGGCG ACTCTGTCTT
TCTAACTTGC AGGCCAGTAA AGCGCGCTAG GTCAATCCAT TGCTGCAGCA ATTCATGAAA ACATCAAATT TGAAAACTCC
AGTACAAATT TAGAAATTGA TGTACAGATG AATATATCAC ATAAAAATGA ATTATAATGA ATTATACTCC ATTAATTTAA
AACTACTAGA TATATTAGAT TATTAAATAT TTTAGATAAA TATCTTATTT TTAATTTTTA TCTTTAATAT TATTTCTTAT
TTATATTTTG AAC

>Vigan.04G413300.01
ATGTCATCAT CGTCTTCCCA AAGCCTCAGA ATTGGCATAG TTGGATTCGG CACCTTTGGC CAATTTCTGG CCAAGACAAT
GATAAAACAA GGCCACTCTC TCTCTGCAAC TTCTCGATCC GATTACTCCG ACCTCTGTCT CCAAATGGGC ATTCACTTTT
ACAGGGATGT CAGCGCGTTC CTTGCTGCTG ACATAGATGT CATAGTGCTG TGCACATCGA TATTATCGCT ATCCGAGGTT
GTGGGGTCAA TGCCACTCGC TTCCCTGAAG CGCCCATCAC TCTTTGTTGA TGTTCTTTCA GTCAAAGAGC ACCCAAGAGA
ACTTCTGCTA CGAGAGTTGC CAGTGCACTC CGACATTCTC TGCACTCACC CTATGTTTGG ACCTGTCACT GGCAAGAATG
GATGGAAAGG TCTCACTTTC ATGTATGACA AAGTTCGGAT AAGAAATGAA GCTATCTGCT CTGGTTTCAT CCAAATTTTT
GCCGGTGAGG GTTGCAAGAT GGTAGAAATG ACTTGTGAGG AACATGACAA AGCAGCTGCG AAGAGCCAAT TTATCACCCA
CACAATTGGC AGAACATTGG CAGAAATGGA TATTAAATCA ACACCTATCG ACACCAAGGG CTTTCAGGAA CTTGTTAAAT
TGAAGGAGAC CATGATAGGA AATAGTTTTG ATTTGTTCAG TGGATTATTC GTGTATAACA GATTCGCCAG CCAGGAGCTG
GAAAACCTTG AACATGCCTT GCAAAAAGTC AAAGAAACGC TGGTTGAAAG GATGAACGAG GAGAAGGGTC AAGAAAAGAA
CTGA

>Vigan.04G413300.01
MSSSSSQSLR IGIVGFGTFG QFLAKTMIKQ GHSLSATSRS DYSDLCLQMG IHFYRDVSAF LAADIDVIVL CTSILSLSEV
VGSMPLASLK RPSLFVDVLS VKEHPRELLL RELPVHSDIL CTHPMFGPVT GKNGWKGLTF MYDKVRIRNE AICSGFIQIF
AGEGCKMVEM TCEEHDKAAA KSQFITHTIG RTLAEMDIKS TPIDTKGFQE LVKLKETMIG NSFDLFSGLF VYNRFASQEL
ENLEHALQKV KETLVERMNE EKGQEKN*