GBrowse Details

Vigan.04G414800.01

Basic Information:
Name: Vigan.04G414800.01
Multiple alignment
Variant Information
Position: Chr04:52410523..52414106 (- strand)
Length: 3584
Functional Information:
Description: Similar to Uroporphyrinogen decarboxylase. [V7D1P6, Phaseolus vulgaris]
GO: Biological Process: porphyrin-containing compound biosynthetic process (GO:0006779)
Molecular Function: uroporphyrinogen decarboxylase activity (GO:0004853)
InterPro: Uroporphyrinogen decarboxylase (URO-D) (IPR000257)
Uroporphyrinogen decarboxylase HemE (IPR006361)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:4.12,3.04,16.26,40.92,7.34,12.35,5.33,7.84
Arabidopsis thaliana homolog: AT2G40490.1
Automatic updates:
Name: NM_001254630 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uroporphyrinogen decarboxylase, chloroplastic-like (LOC100800753), mRNA.
PubMed ID: 28294342 NCBI(pubmed)
Status: Known Variant
Structure :
Position: Chr04:52410523..52410833 (- strand)
Length: 311
Type: three_prime_UTR
Position: Chr04:52410834..52411349 (- strand)
Length: 516
Type: CDS
Position: Chr04:52411739..52411864 (- strand)
Length: 126
Type: CDS
Position: Chr04:52412348..52412536 (- strand)
Length: 189
Type: CDS
Position: Chr04:52412644..52412754 (- strand)
Length: 111
Type: CDS
Position: Chr04:52413321..52413442 (- strand)
Length: 122
Type: CDS
Position: Chr04:52413782..52413881 (- strand)
Length: 100
Type: CDS
Position: Chr04:52413882..52414106 (- strand)
Length: 225
Type: five_prime_UTR


>Vigan.04G414800.01
AGGTGGAAGC AGAGGGTGTG TACTGTCAGA AAATTCCATG GTGAATTTGG TGACATGGCA AAAGCGCAAC AAATTGGGGA
TTGCAATTGG TGAATCAACT CTCCATTGCT CATCTCATTC ATTTTCTTAT CTTACCATTC TTCCCAAACC ATATCACATC
CTTCAAACTT CAATTTCTCT GACACAACTT TTCAGCTCCA CTTCGCTCTG CAATTCAATT CAAAAATGTT GTGTGTCAAC
ACCGCCTTCA CTTCTTTCAT ACCCAGAAAA CCAACTTGTG TTTTTCCCTC CAAATCAACC ACCCCAATTT CCTGCACCCT
CCAAGGAACC GTTGCTGAAC CAAAATCTAC AGCTGCTGCT GAACCGCTTT TGCTTAATGC AGTTCGTGGG GTAGAGGTTG
AAAGACCACC GGTTTGGCTC ATGAGGCAAG CAGGGAGGTA CATGAAGAGT TACCAAACCA TCTGTGAGAA ATATCCTTCA
TTCCGTGAAA GATCTGAAAA TGTCGATCTT GTGGTGGAAA TTTCCCTGCA ACCATGGCAT GTTTTCAAGC CTGATGGAGT
GATTTTATTC TCAGACATTC TTACCCCACT TTCTGGAATG AATATACCCT TTGATATTGT GAAGGGTAAG GGTCCTGTTA
TATTTGATCC TATTCACACA GATGCCCAGG TCAATCAAGT GAGAGAGTTT GTTCCTGAAG AATCAGTTCC ATACGTTGGT
GAAGCACTGA CAATATTGAG GAAAGAGGTG AATGATACAG CTGCAGTTCT TGGTTTTGTT GGGGCACCGT TCACTCTGGC
ATCATATGTG GTTGAAGGTG GTTCATCTAA AAACTTCTCA AAAATAAAAA GATTGGCTTT CTCTGAGTCC AAGATCCTGC
ACTCTTTACT GCAAAAGTTT ACAACATCAA TGGCAAGATA CATTCAATAC CAAGCTGATA ATGGAGCTCA AGCTGTTCAG
ATCTTTGATT CATGGGCAAC AGAACTTAGT CCAGTGGATT TTGAAGAATT CAGTTTGCCT TACTTGAAGC AGATTATCGA
TGCTGTGAAG AAAAGCCATC CAAATCTCCC TTTGATCCTG TATGCTAGTG GATCTGGGGG CTTGCTTGAA AGACTAGCCT
TGACAGGAGT GGATGTAATT AGCTTGGATT GGACAGTTGA TATGGCTGAT GGTAGGAGGC GACTGGGACC AAATATAGCT
GTCCAAGGAA ATGTGGACCC TGGTGTTCTT TTTGGTTCCA AAGAGTTCAT CACTGATAGG ATAAATGATA CTGTGAAAAA
AGCAGGTAGA GGGAAACATA TCTTGAATCT TGGTCATGGA ATTAAAGTAG GTACGCCTGA GGAGAATGTT GCACATTTTT
TTGAGGTTGC TAAATCACTC CGATACTAAC CAGCCAACTA TGATTAATTA TTATTTTTTT GTTTCTCTTC AGCATGTCTG
TTTGATTTTG ATTCTCTAGT GAACCTTTTC AGAATAATTA CATATCCCGT ATTTTCTAAT TGAAAGAAAG TCCCTTGGTT
AATCTGTCAT CTAATTATGA GTAGAAGCCA GGGACATGAA CAATAATGTA TGTACATTGC ATAATACTTT ACAGAGTTAG
ATCAACACGA ACTGTTGGAA GTTTCAAATC GACTAGAGAT AAGGTTAAAA TATAATATAT AAGTGAGATG CAAACTCATC
TCCACAAAAC CGGCTTGTAA 

>Vigan.04G414800.01
ATGTTGTGTG TCAACACCGC CTTCACTTCT TTCATACCCA GAAAACCAAC TTGTGTTTTT CCCTCCAAAT CAACCACCCC
AATTTCCTGC ACCCTCCAAG GAACCGTTGC TGAACCAAAA TCTACAGCTG CTGCTGAACC GCTTTTGCTT AATGCAGTTC
GTGGGGTAGA GGTTGAAAGA CCACCGGTTT GGCTCATGAG GCAAGCAGGG AGGTACATGA AGAGTTACCA AACCATCTGT
GAGAAATATC CTTCATTCCG TGAAAGATCT GAAAATGTCG ATCTTGTGGT GGAAATTTCC CTGCAACCAT GGCATGTTTT
CAAGCCTGAT GGAGTGATTT TATTCTCAGA CATTCTTACC CCACTTTCTG GAATGAATAT ACCCTTTGAT ATTGTGAAGG
GTAAGGGTCC TGTTATATTT GATCCTATTC ACACAGATGC CCAGGTCAAT CAAGTGAGAG AGTTTGTTCC TGAAGAATCA
GTTCCATACG TTGGTGAAGC ACTGACAATA TTGAGGAAAG AGGTGAATGA TACAGCTGCA GTTCTTGGTT TTGTTGGGGC
ACCGTTCACT CTGGCATCAT ATGTGGTTGA AGGTGGTTCA TCTAAAAACT TCTCAAAAAT AAAAAGATTG GCTTTCTCTG
AGTCCAAGAT CCTGCACTCT TTACTGCAAA AGTTTACAAC ATCAATGGCA AGATACATTC AATACCAAGC TGATAATGGA
GCTCAAGCTG TTCAGATCTT TGATTCATGG GCAACAGAAC TTAGTCCAGT GGATTTTGAA GAATTCAGTT TGCCTTACTT
GAAGCAGATT ATCGATGCTG TGAAGAAAAG CCATCCAAAT CTCCCTTTGA TCCTGTATGC TAGTGGATCT GGGGGCTTGC
TTGAAAGACT AGCCTTGACA GGAGTGGATG TAATTAGCTT GGATTGGACA GTTGATATGG CTGATGGTAG GAGGCGACTG
GGACCAAATA TAGCTGTCCA AGGAAATGTG GACCCTGGTG TTCTTTTTGG TTCCAAAGAG TTCATCACTG ATAGGATAAA
TGATACTGTG AAAAAAGCAG GTAGAGGGAA ACATATCTTG AATCTTGGTC ATGGAATTAA AGTAGGTACG CCTGAGGAGA
ATGTTGCACA TTTTTTTGAG GTTGCTAAAT CACTCCGATA CTAA

>Vigan.04G414800.01
MLCVNTAFTS FIPRKPTCVF PSKSTTPISC TLQGTVAEPK STAAAEPLLL NAVRGVEVER PPVWLMRQAG RYMKSYQTIC
EKYPSFRERS ENVDLVVEIS LQPWHVFKPD GVILFSDILT PLSGMNIPFD IVKGKGPVIF DPIHTDAQVN QVREFVPEES
VPYVGEALTI LRKEVNDTAA VLGFVGAPFT LASYVVEGGS SKNFSKIKRL AFSESKILHS LLQKFTTSMA RYIQYQADNG
AQAVQIFDSW ATELSPVDFE EFSLPYLKQI IDAVKKSHPN LPLILYASGS GGLLERLALT GVDVISLDWT VDMADGRRRL
GPNIAVQGNV DPGVLFGSKE FITDRINDTV KKAGRGKHIL NLGHGIKVGT PEENVAHFFE VAKSLRY*