GBrowse Details

Vigan.04G418600.01

Basic Information:
Name: Vigan.04G418600.01
Multiple alignment
Variant Information
Position: Chr04:52751685..52756881 (- strand)
Length: 5197
Functional Information:
Description: Similar to Asparagine synthetase. [B3KYI2, Phaseolus vulgaris]
GO: Biological Process: asparagine biosynthetic process (GO:0006529)
Biological Process: metabolic process (GO:0008152)
Molecular Function: asparagine synthase (glutamine-hydrolyzing) activity (GO:0004066)
InterPro: Class II glutamine amidotransferase domain (IPR000583)
Asparagine synthase (IPR001962)
Asparagine synthase, glutamine-hydrolyzing (IPR006426)
Rossmann-like alpha/beta/alpha sandwich fold (IPR014729)
Glutamine amidotransferase type 2 domain (IPR017932)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:13.01,22.44,32.33,25.17,36.03,32.07,16.64,22.91
Arabidopsis thaliana homolog: AT3G47340.1, AT5G10240.1, AT5G65010.2
Structure :
Position: Chr04:52751685..52751931 (- strand)
Length: 247
Type: three_prime_UTR
Position: Chr04:52751932..52752117 (- strand)
Length: 186
Type: CDS
Position: Chr04:52752433..52752540 (- strand)
Length: 108
Type: CDS
Position: Chr04:52752622..52752708 (- strand)
Length: 87
Type: CDS
Position: Chr04:52752796..52752876 (- strand)
Length: 81
Type: CDS
Position: Chr04:52753537..52753671 (- strand)
Length: 135
Type: CDS
Position: Chr04:52753822..52754043 (- strand)
Length: 222
Type: CDS
Position: Chr04:52754134..52754214 (- strand)
Length: 81
Type: CDS
Position: Chr04:52754306..52754467 (- strand)
Length: 162
Type: CDS
Position: Chr04:52754689..52754783 (- strand)
Length: 95
Type: CDS
Position: Chr04:52754897..52754992 (- strand)
Length: 96
Type: CDS
Position: Chr04:52755674..52755815 (- strand)
Length: 142
Type: CDS
Position: Chr04:52755908..52756003 (- strand)
Length: 96
Type: CDS
Position: Chr04:52756175..52756313 (- strand)
Length: 139
Type: CDS
Position: Chr04:52756608..52756687 (- strand)
Length: 80
Type: CDS
Position: Chr04:52756688..52756881 (- strand)
Length: 194
Type: five_prime_UTR


>Vigan.04G418600.01
CTTAAATAAA ATGAGAAAAA AAAGTAGAAA ATCCGAGAGA ATCTTCGGAG TTCTGACAAC CTGGGAGAAA TAACCATATT
AAAAAAACGA AAATAATTAC CATTAACTGA AAGACGTGAT AAAATAAATA CTGAAACCTA TCACTTTACC CTGAGTTGTG
TCTTCCCCTG TGTTTCAGAT TTTACTCAGC CGCCATGTGC GGAATCCTTG CAGTGTTGGG TTGCGTCGAC AACTCTCAGG
CCAAGCGCGC TCGCATCATC GAATTGTCTC GCAGGTTGCG GCATAGAGGT CCTGATTGGA GTGGCATACA TTGCCATGAT
GATTGTTACC TTGCTCATCA AAGGCTTGCT ATTGTTGACC CTACTTCAGG GGATCAACCT TTGTACAACG AAGACAAGAC
TGTTATTGTC ACCGTAAATG GGGAGATATA CAACCACAAA CAATTGAGAC AGAAACTGAG TTCTCATAAA TTTCGAACTG
GTAGTGATTG TGAAGTGATT GCCCATCTTT ATGAAGAGTA TGGGGAGGAA TTTGTTAACA TGCTGGATGG GATGTTCGCC
TTTATTCTTC TTGATACTCG AGATAAAAGT TTTATTGCTG CTCGTGATGC TATTGGCATT ACCCCTCTTT ATTTGGGCTG
GGGTCTTGAT GGATCAACAT GGTTTGCATC TGAAATGAAA GCTCTGAGTG ATGATTGTGA GAGATTCATG TCATTTCCTC
CAGGGCATAT ATATTCCAGC AAACAAGGAG GATTAAGAAG GTGGTACAAT CCACCATGGT TTTCGGAGAT TGTTCCATCA
ACTCCCTATG ATCCAATACT TTTGCGTGAG ACCTTCGAGA GGGCTGTGGT TAAGAGAATG ATGACTGATG TACCCTTTGG
AGTTCTTTTG TCCGGAGGAT TGGATTCATC ACTTGTTGCC TCTGTGGTCA ATCGATATTT AGCGGAATCT GAGGCGGCTC
GTCAATGGGG ATCACAGTTG CATACTTTCT GCATTGGTTT AAAGGGCTCT CCGGACTTGA AAGCTGCAAA AGAGGTAGCA
GATTATCTTG GTACTCGTCA CCACGAACTT TATTTCACGG TTCAGGAAGG TATAGATGCA CTTGAAGAAG TCATTTACCA
TATTGAAACA TATGACGTAA CGACTATCAG AGCAAGTACT CCAATGTTTC TTATGTCCAG GAAAATTAAA GCCTTGGGAG
TGAAAATGGT TCTTTCTGGA GAAGGTTCAG ATGAAATATT TGGAGGTTAC CTGTATTTTC ATAAGGCACC TAACAAGAAA
GAGCTTCACG AAGAAACTTG TCGAAAAATT AAAGCTCTTC ATCTTTATGA CTGCCTGAGA GCCAATAAGT CAACTGCAGC
ATGGGGAGTA GAGGCCCGTG TACCATTCTT GGATAAAGAA TTTATCGAAG TAGCAATGAG TATGGATCCG GAGTGGAAAA
TGATAAGGCG TGATCTTGGA AGGATAGAGA AGTGGGTATT ACGCAATGCA TTTGATGATG AAGAGAATCC ATATTTACCA
AAGCACATAT TGTACAGGCA GAAGGAACAG TTCAGTGACG GGGTTGGTTA CAGTTGGATT GATGCCTTGA AGGATCACGC
TGATAAACAA GTCCCAGATG CAACAATGCT TGCTGCCAGT TTTATTTACC CAGAAAACAC TCCTACCACC AAAGAAGGAT
ACCTCTACAG GACAATTTTT GAGAAGTTCT TTCCGAAGAA TGCAGCAAGG GCAACAGTTC CAGGGGGTCC TAGTGTGGCA
TGCAGTACTG CAAAAGCTGT GGAATGGGAT GCGGCATGGT CTAAAAATCT TGACCCTTCT GGTCGTGCCG CGCTTGGTGT
TCATGAAGCT TCATATGATG CAGTGGATAC CAAAGTTCAC AAACCCAAAA ATGGACCACT TTAGAAGATC CATAGTTGAT
TGTCAACAAA AAAAGTGTAC GCAATAACTG TCAAGTCAAG TGGGAATTTA AATTCAAGTA GATGAAACTA ATGAATGGCG
GGGTTGTTTT TATTTGTAGG TTAAATTAAT ATGTAGGTCT TAAACTATTT GTTGTTTTTT TCTTAAATAA TTATCTATGT
TTAAAAGTTT TTAATCTGTA ATTGGACCTT TTCATTACAT TTCGATTAAA ATTTTGTTGT ATAAAAGGAC G

>Vigan.04G418600.01
ATGTGCGGAA TCCTTGCAGT GTTGGGTTGC GTCGACAACT CTCAGGCCAA GCGCGCTCGC ATCATCGAAT TGTCTCGCAG
GTTGCGGCAT AGAGGTCCTG ATTGGAGTGG CATACATTGC CATGATGATT GTTACCTTGC TCATCAAAGG CTTGCTATTG
TTGACCCTAC TTCAGGGGAT CAACCTTTGT ACAACGAAGA CAAGACTGTT ATTGTCACCG TAAATGGGGA GATATACAAC
CACAAACAAT TGAGACAGAA ACTGAGTTCT CATAAATTTC GAACTGGTAG TGATTGTGAA GTGATTGCCC ATCTTTATGA
AGAGTATGGG GAGGAATTTG TTAACATGCT GGATGGGATG TTCGCCTTTA TTCTTCTTGA TACTCGAGAT AAAAGTTTTA
TTGCTGCTCG TGATGCTATT GGCATTACCC CTCTTTATTT GGGCTGGGGT CTTGATGGAT CAACATGGTT TGCATCTGAA
ATGAAAGCTC TGAGTGATGA TTGTGAGAGA TTCATGTCAT TTCCTCCAGG GCATATATAT TCCAGCAAAC AAGGAGGATT
AAGAAGGTGG TACAATCCAC CATGGTTTTC GGAGATTGTT CCATCAACTC CCTATGATCC AATACTTTTG CGTGAGACCT
TCGAGAGGGC TGTGGTTAAG AGAATGATGA CTGATGTACC CTTTGGAGTT CTTTTGTCCG GAGGATTGGA TTCATCACTT
GTTGCCTCTG TGGTCAATCG ATATTTAGCG GAATCTGAGG CGGCTCGTCA ATGGGGATCA CAGTTGCATA CTTTCTGCAT
TGGTTTAAAG GGCTCTCCGG ACTTGAAAGC TGCAAAAGAG GTAGCAGATT ATCTTGGTAC TCGTCACCAC GAACTTTATT
TCACGGTTCA GGAAGGTATA GATGCACTTG AAGAAGTCAT TTACCATATT GAAACATATG ACGTAACGAC TATCAGAGCA
AGTACTCCAA TGTTTCTTAT GTCCAGGAAA ATTAAAGCCT TGGGAGTGAA AATGGTTCTT TCTGGAGAAG GTTCAGATGA
AATATTTGGA GGTTACCTGT ATTTTCATAA GGCACCTAAC AAGAAAGAGC TTCACGAAGA AACTTGTCGA AAAATTAAAG
CTCTTCATCT TTATGACTGC CTGAGAGCCA ATAAGTCAAC TGCAGCATGG GGAGTAGAGG CCCGTGTACC ATTCTTGGAT
AAAGAATTTA TCGAAGTAGC AATGAGTATG GATCCGGAGT GGAAAATGAT AAGGCGTGAT CTTGGAAGGA TAGAGAAGTG
GGTATTACGC AATGCATTTG ATGATGAAGA GAATCCATAT TTACCAAAGC ACATATTGTA CAGGCAGAAG GAACAGTTCA
GTGACGGGGT TGGTTACAGT TGGATTGATG CCTTGAAGGA TCACGCTGAT AAACAAGTCC CAGATGCAAC AATGCTTGCT
GCCAGTTTTA TTTACCCAGA AAACACTCCT ACCACCAAAG AAGGATACCT CTACAGGACA ATTTTTGAGA AGTTCTTTCC
GAAGAATGCA GCAAGGGCAA CAGTTCCAGG GGGTCCTAGT GTGGCATGCA GTACTGCAAA AGCTGTGGAA TGGGATGCGG
CATGGTCTAA AAATCTTGAC CCTTCTGGTC GTGCCGCGCT TGGTGTTCAT GAAGCTTCAT ATGATGCAGT GGATACCAAA
GTTCACAAAC CCAAAAATGG ACCACTTTAG 

>Vigan.04G418600.01
MCGILAVLGC VDNSQAKRAR IIELSRRLRH RGPDWSGIHC HDDCYLAHQR LAIVDPTSGD QPLYNEDKTV IVTVNGEIYN
HKQLRQKLSS HKFRTGSDCE VIAHLYEEYG EEFVNMLDGM FAFILLDTRD KSFIAARDAI GITPLYLGWG LDGSTWFASE
MKALSDDCER FMSFPPGHIY SSKQGGLRRW YNPPWFSEIV PSTPYDPILL RETFERAVVK RMMTDVPFGV LLSGGLDSSL
VASVVNRYLA ESEAARQWGS QLHTFCIGLK GSPDLKAAKE VADYLGTRHH ELYFTVQEGI DALEEVIYHI ETYDVTTIRA
STPMFLMSRK IKALGVKMVL SGEGSDEIFG GYLYFHKAPN KKELHEETCR KIKALHLYDC LRANKSTAAW GVEARVPFLD
KEFIEVAMSM DPEWKMIRRD LGRIEKWVLR NAFDDEENPY LPKHILYRQK EQFSDGVGYS WIDALKDHAD KQVPDATMLA
ASFIYPENTP TTKEGYLYRT IFEKFFPKNA ARATVPGGPS VACSTAKAVE WDAAWSKNLD PSGRAALGVH EASYDAVDTK
VHKPKNGPL*