GBrowse Details

Vigan.04G418900.01

Basic Information:
Name: Vigan.04G418900.01
Multiple alignment
Variant Information
Position: Chr04:52762418..52767207 (- strand)
Length: 4790
Functional Information:
Description: Similar to uncharacterized LOC101221126. [XP_004156542.1, Cucumis sativus]
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:0.19,0.24,8.03,5.61,34.89,5.81,36.02,8.37
Arabidopsis thaliana homolog: AT4G39900.1
Automatic updates:
Name: NM_001252999 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max uncharacterized LOC100788279 (LOC100788279), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:52762418..52762875 (- strand)
Length: 458
Type: three_prime_UTR
Position: Chr04:52762876..52762954 (- strand)
Length: 79
Type: CDS
Position: Chr04:52764051..52764159 (- strand)
Length: 109
Type: CDS
Position: Chr04:52764872..52764947 (- strand)
Length: 76
Type: CDS
Position: Chr04:52765088..52765372 (- strand)
Length: 285
Type: CDS
Position: Chr04:52766121..52766179 (- strand)
Length: 59
Type: CDS
Position: Chr04:52766278..52766386 (- strand)
Length: 109
Type: CDS
Position: Chr04:52766914..52766937 (- strand)
Length: 24
Type: CDS
Position: Chr04:52766938..52767207 (- strand)
Length: 270
Type: five_prime_UTR


>Vigan.04G418900.01
TGAAGGGTTC GTCGTTATGG TCGACGTCGT AGTCAGAAGT CTTTATGGCA AATCGCGCAC ACTGTAGAGT ACTATGATAT
GTATGTATGT ATGTGATGTG TAGTATAGTT CCTACAAATT CAGACCTTCG TCTTCAGTTC AGTTCCTCCT TAATAATATA
ACAATGTAAC GTTCAAATTC GACTCCAATC TCAATTGCAT TCTCTTTCCT CTCATTTTCC CCTTTTCCCT CTTCCTCGCA
ACAACCTAAC ACTCTCTTTT CACGCCATCA ATGGCTGTCG ATTCCTCCGC TCAGAGAGAA CATCAAATTC GGGAGTTTGT
GGACGGGAAT GGAAATGTCG CTGTCGGTTT GAAGTCACAT AATAAACCGA GTAGTGGCGA TCTTAACCAA CAGTTTCCTC
TAGAGATTCC GCCGATACTG TTTGAAGATT CTTCCCTTCC AGCTGGATTG CAGAGTTCAC ATACTCGAGA CCTTTATAGT
ATTTCTGTGT TGCCTGAGGA AGATGAAAGC GAAAAGTGTG CTTCACCACT AGCTTTCTTA AGCATCTTAG AGGTTCCTAA
TCAAGCTAAA AGTCCAATGT GCTTAGATTC TCCCATAAAT TGCCAAAACT GCATTGATTT TCAAATGAAG AATGAAGATG
TGTATTCCCA GTGCTCGATT GATATTCCTT GTGTGAATGG AAATTCAGTT TTTCCTGAAT CTTATGAAGA GACAGTCGAA
TGTTTTAAAA CTGGAAACTC ACCGACTAGT GTACTTTGGA GAGAATCAAG TTTCAAAGGA GGAAAACTTA TGCAGAGTCT
GGTCAATGTC AGCAATCCAA GAGATAAACC AATCTCTGAG AAGCTACATG ATTTACCTAG TAACAGATGG AGAAGATATA
AACGTGCTGC CTCATTTGAT TCCAGAAAAG TTGCTCTTCT GTTTTCAGTA TTGTCAAGTT TCGGAACATT GGTGTTGATA
TATCTGACGT TGAGACTTAG GCAGAGAGCT GATGGCTTTG CTCTTATTTG AAGTTCCAAT ATTTGACACC CACTGTTTTC
AGATTTCTAA GCTTCTATGG TTTTGTGTAG TTTAAACTTG CCCCTTGATT TGTAATAGAG CTGCTTGTGA TGTTGAAATT
TAGAATCTAG GAAATTTTAT TTGGCACAAA ATATAGTGGC GCTTGTCTTT AAAGTCTATT TTATTTAGTG ACGTGTCTTC
CAAATCATCA GTACAATCTA AAGATTAAGC CAGGAAAGCC AAACAAAGAC CATCAATTGG AAAGATGCCA AAAAAGTTCG
TGTAAATGGT GTGAAGATGC AGGGAATGAA CGTTGCGGAG TGTTGTGACT TGTGATCATA TTTTCTTCAT TCTTCAGGGT
CAACTATGGA AGCCGGAAAG ACAGAATAAC GGATCCCATT GTATTTATGT TTATAGTTCC AAAAGACTAC TGAACTTTGT
CTGGATTGAA CAGATTTACA TTAAATCAA

>Vigan.04G418900.01
ATGGCTGTCG ATTCCTCCGC TCAGAGAGAA CATCAAATTC GGGAGTTTGT GGACGGGAAT GGAAATGTCG CTGTCGGTTT
GAAGTCACAT AATAAACCGA GTAGTGGCGA TCTTAACCAA CAGTTTCCTC TAGAGATTCC GCCGATACTG TTTGAAGATT
CTTCCCTTCC AGCTGGATTG CAGAGTTCAC ATACTCGAGA CCTTTATAGT ATTTCTGTGT TGCCTGAGGA AGATGAAAGC
GAAAAGTGTG CTTCACCACT AGCTTTCTTA AGCATCTTAG AGGTTCCTAA TCAAGCTAAA AGTCCAATGT GCTTAGATTC
TCCCATAAAT TGCCAAAACT GCATTGATTT TCAAATGAAG AATGAAGATG TGTATTCCCA GTGCTCGATT GATATTCCTT
GTGTGAATGG AAATTCAGTT TTTCCTGAAT CTTATGAAGA GACAGTCGAA TGTTTTAAAA CTGGAAACTC ACCGACTAGT
GTACTTTGGA GAGAATCAAG TTTCAAAGGA GGAAAACTTA TGCAGAGTCT GGTCAATGTC AGCAATCCAA GAGATAAACC
AATCTCTGAG AAGCTACATG ATTTACCTAG TAACAGATGG AGAAGATATA AACGTGCTGC CTCATTTGAT TCCAGAAAAG
TTGCTCTTCT GTTTTCAGTA TTGTCAAGTT TCGGAACATT GGTGTTGATA TATCTGACGT TGAGACTTAG GCAGAGAGCT
GATGGCTTTG CTCTTATTTG A

>Vigan.04G418900.01
MAVDSSAQRE HQIREFVDGN GNVAVGLKSH NKPSSGDLNQ QFPLEIPPIL FEDSSLPAGL QSSHTRDLYS ISVLPEEDES
EKCASPLAFL SILEVPNQAK SPMCLDSPIN CQNCIDFQMK NEDVYSQCSI DIPCVNGNSV FPESYEETVE CFKTGNSPTS
VLWRESSFKG GKLMQSLVNV SNPRDKPISE KLHDLPSNRW RRYKRAASFD SRKVALLFSV LSSFGTLVLI YLTLRLRQRA
DGFALI*