VIGGS:GBrowse

Vigan.04G420200.01

Basic Information:

Name:	Vigan.04G420200.01 Multiple alignment Variant Information
Position:	Chr04:52890295..52894597 (+ strand)
Length:	4303

Functional Information:

Description:	Similar to Uncharacterized protein. [I1MYQ4, Glycine max]
GO:	Biological Process: GTP catabolic process (GO:0006184)
	Biological Process: intracellular protein transport (GO:0006886)
	Biological Process: nucleocytoplasmic transport (GO:0006913)
	Biological Process: signal transduction (GO:0007165)
	Biological Process: small GTPase mediated signal transduction (GO:0007264)
	Biological Process: protein transport (GO:0015031)
	Cellular Component: intracellular (GO:0005622)
	Cellular Component: membrane (GO:0016020)
	Molecular Function: GTPase activity (GO:0003924)
	Molecular Function: GTP binding (GO:0005525)
InterPro:	Small GTPase superfamily (IPR001806)
	Ran GTPase (IPR002041)
	Small GTPase superfamily, Rho type (IPR003578)
	Small GTPase superfamily, Rab type (IPR003579)
	Small GTP-binding protein domain (IPR005225)
	Small GTPase superfamily, Ras type (IPR020849)
	Small GTPase superfamily, ARF type (IPR024156)
	P-loop containing nucleoside triphosphate hydrolase (IPR027417)
Expression level (FPKM):	Co,Em,Fl,Le,No,Po,Ro,St:6.95,9.58,19.96,19.36,40.27,20.06,24.38,28.27
Arabidopsis thaliana homolog:	AT5G65270.1

Automatic updates:

Name:	NM_001250446 NCBI(nuccore)
Organism:	Glycine max
Description:	Glycine max RAB GTPase RABA4a-like (LOC100527786), mRNA.
PubMed ID:	-
Status:	Known Variant

Structure :

[show][hide]Parts:

Position:	Chr04:52890295..52890583 (+ strand)
Length:	289
Type:	five_prime_UTR

Position:	Chr04:52890584..52890816 (+ strand)
Length:	233
Type:	CDS

Position:	Chr04:52893753..52894191 (+ strand)
Length:	439
Type:	CDS

Position:	Chr04:52894192..52894597 (+ strand)
Length:	406
Type:	three_prime_UTR

[hide all][show all]SEQUENCES

[show][hide][copy]EXON + INTRON

[show][hide][copy]TRANSCRIPT

>Vigan.04G420200.01
CTGTAATAAA GCTGTTTTCA ACCATTCTTC CCTCCCTTTC ACTACACAAA TTTATTTTAT TTTATTCTCA ATAAAATCAA
TGAAGCTTAT AGGGACCAGC GCCCAATACC ATACCGCCAC GTGTCATATG AATCCCACTA CACTACTCTG TTCCACACTT
AATAATCCTC CAAATTAATC CAAGCATTAA ACAGTTGCTT AATCAATCGC CGACCAAGCT CAATTTGAAA TAGAAAGAGC
CACAAATTTG GGAGTGAGAA AGAAGGAGAA AGTGCATTTT ACCTGAATAA TGGCTAGTGC AGGAGGCTAC GGAGACGCGA
ACCAAAAGGT AGATTACGTG TTCAAGGTGG TGCTTATAGG CGATTCGGCG GTGGGGAAGT CGCAGATACT TGCGCGATTC
GCGAGAAATG AGTTCAGCTT GGATTCGAAG GCCACAATCG GTGTCGAGTT CCAAACCCGC ACTTTGGTGA TTCAGCACAA
GAGCGTCAAG GCTCAGATCT GGGACACTGC GGGACAAGAA CGATATAGAG CAGTCACAAG TGCATACTAC AGGGGTGCTG
TCGGGGCAAT GCTGGTTTAT GACATCACAA AACGTCAAAG CTTCGATCAC ATACCTCGCT GGTTAGAAGA ACTGCGTAAC
CATGCTGATA AGAATATAGT CATTATTCTT ATAGGAAACA AAAGTGATCT GGAGAACCAG CGTCAAGTAC CCACAGACGA
TGCAAAAGAA TTTGCCGAGA AAGAAGGCTT ATTTTTCTTG GAGACTTCAG CGCTGGAATC GACTAACGTT GAAACAGCCT
TCATGACGGT TTTGACAGAA ATATTCAACA TTGTTAACAA GAAGAACCTA GCGGCTGGTG ATAGTCAGGG AAATGGCAAC
TCAGCATCTC TGTCTGGTAA GAAGATTATT GTTCCTGGTC CTGCTCAAGA AATCCCCAAG GGGAACATGT GTTGTCAGTA
ATCCTGACTT TATTTATAAT TTGTTTAAAT TTTCTAGATT TTCATGGTTG TGTTCCTATC ACCAATTTTT ATTAGTCTGG
TGCATTTTAT TTTGTATATT ATTACATTAT TTAAAATTTA TTTTGCATGA GTTGCTCATT AAGATCAAGA AAGGGAAGTA
ATTAAATGTT TTTATCTGTT AGTAGGAATA GAATACATGT AGGGCGGACT GAAAATCATC ATCCTGACAG TGCTGGTCTT
CCTTGACTTT AAGCGTGCTG TTTTAGATAT GTTTATTGTT ATTTTTCAAT TAAATTAAAG TTTCATCTCA TTAATCAGTG
CTGACCTTTG TTGTGCTGGA TTTAAAAAAA ATATTTTATT CAGAAAATAA AACAAAATAG TGGTAATAAT TTAAGCTTAA
ATCTTTG

[show][hide][copy]CDS

>Vigan.04G420200.01
ATGGCTAGTG CAGGAGGCTA CGGAGACGCG AACCAAAAGG TAGATTACGT GTTCAAGGTG GTGCTTATAG GCGATTCGGC
GGTGGGGAAG TCGCAGATAC TTGCGCGATT CGCGAGAAAT GAGTTCAGCT TGGATTCGAA GGCCACAATC GGTGTCGAGT
TCCAAACCCG CACTTTGGTG ATTCAGCACA AGAGCGTCAA GGCTCAGATC TGGGACACTG CGGGACAAGA ACGATATAGA
GCAGTCACAA GTGCATACTA CAGGGGTGCT GTCGGGGCAA TGCTGGTTTA TGACATCACA AAACGTCAAA GCTTCGATCA
CATACCTCGC TGGTTAGAAG AACTGCGTAA CCATGCTGAT AAGAATATAG TCATTATTCT TATAGGAAAC AAAAGTGATC
TGGAGAACCA GCGTCAAGTA CCCACAGACG ATGCAAAAGA ATTTGCCGAG AAAGAAGGCT TATTTTTCTT GGAGACTTCA
GCGCTGGAAT CGACTAACGT TGAAACAGCC TTCATGACGG TTTTGACAGA AATATTCAAC ATTGTTAACA AGAAGAACCT
AGCGGCTGGT GATAGTCAGG GAAATGGCAA CTCAGCATCT CTGTCTGGTA AGAAGATTAT TGTTCCTGGT CCTGCTCAAG
AAATCCCCAA GGGGAACATG TGTTGTCAGT AA

[show][hide][copy]PROTEIN

>Vigan.04G420200.01
MASAGGYGDA NQKVDYVFKV VLIGDSAVGK SQILARFARN EFSLDSKATI GVEFQTRTLV IQHKSVKAQI WDTAGQERYR
AVTSAYYRGA VGAMLVYDIT KRQSFDHIPR WLEELRNHAD KNIVIILIGN KSDLENQRQV PTDDAKEFAE KEGLFFLETS
ALESTNVETA FMTVLTEIFN IVNKKNLAAG DSQGNGNSAS LSGKKIIVPG PAQEIPKGNM CCQ*