GBrowse Details

Vigan.04G420800.01

Basic Information:
Name: Vigan.04G420800.01
Multiple alignment
Variant Information
Position: Chr04:52929477..52932150 (+ strand)
Length: 2674
Functional Information:
Description: Similar to Adenosylhomocysteinase. [I1KS65, Glycine max]
GO: Biological Process: one-carbon metabolic process (GO:0006730)
Molecular Function: adenosylhomocysteinase activity (GO:0004013)
InterPro: Adenosylhomocysteinase (IPR000043)
S-adenosyl-L-homocysteine hydrolase, NAD binding domain (IPR015878)
NAD(P)-binding domain (IPR016040)
S-adenosyl-L-homocysteine hydrolase, conserved site (IPR020082)
Expression level (FPKM): Co,Em,Fl,Le,No,Po,Ro,St:17.94,79.42,266.49,118.24,227.28,522.16,235.72,416.77
Arabidopsis thaliana homolog: AT3G23810.1, AT4G13940.1
Automatic updates:
Name: NM_001279025 NCBI(nuccore)
Organism: Cicer arietinum
Description: Cicer arietinum adenosylhomocysteinase-like (LOC101494081), mRNA.
PubMed ID: -
Status: Known Variant
Name: NM_001317513 NCBI(nuccore)
Organism: Glycine max
Description: Glycine max adenosylhomocysteinase-like (LOC100815953), mRNA.
PubMed ID: -
Status: Known Variant
Structure :
Position: Chr04:52929477..52929693 (+ strand)
Length: 217
Type: five_prime_UTR
Position: Chr04:52929694..52930404 (+ strand)
Length: 711
Type: CDS
Position: Chr04:52930894..52931640 (+ strand)
Length: 747
Type: CDS
Position: Chr04:52931641..52932150 (+ strand)
Length: 510
Type: three_prime_UTR


>Vigan.04G420800.01
GAAAAGGAAA GGTAGAAGGT AAGGTTGAAA AATTAACCTA AAATTAGGAT AGGAGGAAGT AAGAAGGAAG AAAAAAAAAG
CAGATCTGGT AGTCCACTCA CCAACTCCCT CTCTCGGCCC TTATTTATAC CCACACTCCT GCGTCTCCCA TTCGTCACTC
ACTGCCTCGT TCTCTCTAAA CCCCACTCAC TCTTCTTTCT CTTGCTGCTG CGCAACCATG TCTCTGTTGG TCGAGAAAAC
CACAAGCGGC CGCGAGTACA AGGTCAAGGA CCTTTCCCAG GCGGACTTCG GCCGCCTGGA GATCGAGCTC GCGGAGGTGG
AGATGCCGGG CCTCATATCC TGCCGGACTG AGTTCGGCCC ATCACAGCCC TTCAAAGGGG CCCGCATCAC CGGCTCCCTC
CACATGACCA TCCAGACCGC CGTGCTGATT GAGACCCTCA CCGCCCTTGG CGCCGAGGTT CGCTGGTGCT CCTGCAACAT
CTTCTCCACG CAGGACCACG CCGCTGCTGC TATCGCTCGC GACAGCGCTG CTGTGTTCGC CTGGAAGGGA GAGACCCTCC
AGGAGTACTG GTGGTGCACC GAGCGCGCCC TTGACTGGGG CCCCGGCGGC GGTCCTGACC TCATCATCGA CGACGGTGGT
GACGCCACCC TCCTCATCCA CGAGGGTGTC AAGGCCGAGG AGCTCTATGA GAAAACCGGC GCGCTCCCCG ACCCCGCTTC
CACTGACAAC GCTGAGTTCC AGATCGTGCT TACCATCATT AGAGATGGGT TGAAGACCGA CCCCACCAGG TACCGCAAGA
TGAAGGAGCG TATTGTTGGT GTTTCTGAGG AGACTACCAC TGGTGTGAAG AGGCTGTATC AGATGCAGGC CAGTGGGACT
CTTCTGTTCC CTGCTATTAA TGTCAATGAC TCTGTCACCA AGAGCAAGTT TGACAACTTG TATGGGTGCC GTCATTCTCT
GCCCGACGGT CTGATGAGGG CTACTGATGT TATGATTGCG GGGAAGGTGG CTGTCGTGGC TGGATATGGT GATGTTGGCA
AGGGTTGTGC TGCTGCGTTG AAGCAGGCTG GTGCTCGTGT CATCGTGACT GAGATTGATC CCATCTGTGC CCTCCAGGCT
CTCATGGAAG GCCTTCAGGT TTTGACCTTG GAGGATGTTG TATCCGAGGC TGATATCTTT GTTACCACAA CAGGTAACAA
GGACATCATT ATGGTTGACC ACATGAGGAA AATGAAGAAC AATGCCATTG TTTGCAACAT TGGTCACTTT GACAATGAGA
TCGACATGCT GGGGCTGGAG ACCTACCCAG GTGTGAAGCG CATCACAATC AAGCCCCAGA CTGACAGGTG GGTCTTCCCT
GAGACCAACA TCGGCATCAT TGTCTTGGCC GAGGGACGTT TGATGAACTT AGGATGTGCT ACAGGACACC CCAGTTTTGT
GATGTCTTGC TCCTTCACCA ACCAGGTCAT TGCCCAGCTT GAGTTGTGGA AGGAGAAGAG CACTGGGAAG TATAAGAAGG
AGGTTTATGT TTTGCCCAAG CACCTTGATG AGAAGGTGGC TGCACTTCAC CTTGGCAAAC TTGGAGCTAA GCTCACCAAG
CTCACGAAGT CTCAGGCTGA TTACATCAGT GTGCCTGTTG AGGGTCCATA CAAGCCTGCT CTCTACAGGT ACTAAGTTTG
TTGTTGTGAT GATCCAAGGA GAACGTGGGA AAGGTGAAAC TGTTTTATGA AGCGGCTTGT TTTTTTTTTT TTTTGGATTT
TTTGTGCTAG GTTTACATCT ATATGTAGAA GAAGAGTTGT TTTCTTCATT TTGTAGAACT TCTTCTGTTT GGTTGGGTGG
GACGTGTAGG AGCGCTATAC GGCCTCTTGG ATTCTGTGAT ATGAATCCAA TTTGGTTTGA AATAAGGCTT GTTTTGATTG
GGGGCGGTGG CGTTCTGGTT TAACTAAAGT TTGTGTTTTT TTTCCACCTT TTTAATATAT CAAAGAAAAT AAGAAACATG
AAAAAAAAAC CCTACTTGCA TTGCACCCAT GATTTCTACA GTTCGCAGAC TTATAGCTCT ATTTAAGTGA TAAGGCAAAC
CAATTTCTGT GATAATAATT GATTTACAGT TTATCGCTTA AAGTGAAGGG TGTTAAACTT GAACATTTAA TGCAAAAGTG
CAACAAAATG ATATTTTTGT GTCGG

>Vigan.04G420800.01
ATGTCTCTGT TGGTCGAGAA AACCACAAGC GGCCGCGAGT ACAAGGTCAA GGACCTTTCC CAGGCGGACT TCGGCCGCCT
GGAGATCGAG CTCGCGGAGG TGGAGATGCC GGGCCTCATA TCCTGCCGGA CTGAGTTCGG CCCATCACAG CCCTTCAAAG
GGGCCCGCAT CACCGGCTCC CTCCACATGA CCATCCAGAC CGCCGTGCTG ATTGAGACCC TCACCGCCCT TGGCGCCGAG
GTTCGCTGGT GCTCCTGCAA CATCTTCTCC ACGCAGGACC ACGCCGCTGC TGCTATCGCT CGCGACAGCG CTGCTGTGTT
CGCCTGGAAG GGAGAGACCC TCCAGGAGTA CTGGTGGTGC ACCGAGCGCG CCCTTGACTG GGGCCCCGGC GGCGGTCCTG
ACCTCATCAT CGACGACGGT GGTGACGCCA CCCTCCTCAT CCACGAGGGT GTCAAGGCCG AGGAGCTCTA TGAGAAAACC
GGCGCGCTCC CCGACCCCGC TTCCACTGAC AACGCTGAGT TCCAGATCGT GCTTACCATC ATTAGAGATG GGTTGAAGAC
CGACCCCACC AGGTACCGCA AGATGAAGGA GCGTATTGTT GGTGTTTCTG AGGAGACTAC CACTGGTGTG AAGAGGCTGT
ATCAGATGCA GGCCAGTGGG ACTCTTCTGT TCCCTGCTAT TAATGTCAAT GACTCTGTCA CCAAGAGCAA GTTTGACAAC
TTGTATGGGT GCCGTCATTC TCTGCCCGAC GGTCTGATGA GGGCTACTGA TGTTATGATT GCGGGGAAGG TGGCTGTCGT
GGCTGGATAT GGTGATGTTG GCAAGGGTTG TGCTGCTGCG TTGAAGCAGG CTGGTGCTCG TGTCATCGTG ACTGAGATTG
ATCCCATCTG TGCCCTCCAG GCTCTCATGG AAGGCCTTCA GGTTTTGACC TTGGAGGATG TTGTATCCGA GGCTGATATC
TTTGTTACCA CAACAGGTAA CAAGGACATC ATTATGGTTG ACCACATGAG GAAAATGAAG AACAATGCCA TTGTTTGCAA
CATTGGTCAC TTTGACAATG AGATCGACAT GCTGGGGCTG GAGACCTACC CAGGTGTGAA GCGCATCACA ATCAAGCCCC
AGACTGACAG GTGGGTCTTC CCTGAGACCA ACATCGGCAT CATTGTCTTG GCCGAGGGAC GTTTGATGAA CTTAGGATGT
GCTACAGGAC ACCCCAGTTT TGTGATGTCT TGCTCCTTCA CCAACCAGGT CATTGCCCAG CTTGAGTTGT GGAAGGAGAA
GAGCACTGGG AAGTATAAGA AGGAGGTTTA TGTTTTGCCC AAGCACCTTG ATGAGAAGGT GGCTGCACTT CACCTTGGCA
AACTTGGAGC TAAGCTCACC AAGCTCACGA AGTCTCAGGC TGATTACATC AGTGTGCCTG TTGAGGGTCC ATACAAGCCT
GCTCTCTACA GGTACTAA

>Vigan.04G420800.01
MSLLVEKTTS GREYKVKDLS QADFGRLEIE LAEVEMPGLI SCRTEFGPSQ PFKGARITGS LHMTIQTAVL IETLTALGAE
VRWCSCNIFS TQDHAAAAIA RDSAAVFAWK GETLQEYWWC TERALDWGPG GGPDLIIDDG GDATLLIHEG VKAEELYEKT
GALPDPASTD NAEFQIVLTI IRDGLKTDPT RYRKMKERIV GVSEETTTGV KRLYQMQASG TLLFPAINVN DSVTKSKFDN
LYGCRHSLPD GLMRATDVMI AGKVAVVAGY GDVGKGCAAA LKQAGARVIV TEIDPICALQ ALMEGLQVLT LEDVVSEADI
FVTTTGNKDI IMVDHMRKMK NNAIVCNIGH FDNEIDMLGL ETYPGVKRIT IKPQTDRWVF PETNIGIIVL AEGRLMNLGC
ATGHPSFVMS CSFTNQVIAQ LELWKEKSTG KYKKEVYVLP KHLDEKVAAL HLGKLGAKLT KLTKSQADYI SVPVEGPYKP
ALYRY*